Wall clock time and date at job start Sun Mar 7 2021 11:24:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.53001 * 109.47194 * 2 1 4 4 C 1.52997 * 109.47420 * 239.99457 * 2 1 3 5 5 Si 1.86309 * 109.46860 * 119.99536 * 2 1 3 6 6 C 1.86299 * 109.47133 * 299.99827 * 5 2 1 7 7 C 1.86301 * 109.46907 * 180.02562 * 5 2 1 8 8 O 1.63098 * 109.46982 * 59.99961 * 5 2 1 9 9 C 1.42902 * 113.99860 * 179.97438 * 8 5 2 10 10 C 1.53502 * 114.20502 * 210.00337 * 9 8 5 11 11 N 1.47070 * 87.97873 * 220.34352 * 10 9 8 12 12 C 1.34777 * 136.05212 * 207.07785 * 11 10 9 13 13 O 1.21283 * 120.00463 * 0.02562 * 12 11 10 14 14 C 1.50700 * 119.99675 * 179.73146 * 12 11 10 15 15 C 1.53538 * 109.82523 * 80.27801 * 14 12 11 16 16 C 1.53035 * 108.56665 * 180.48963 * 15 14 12 17 17 C 1.50212 * 110.31443 * 310.42959 * 16 15 14 18 18 C 1.50696 * 118.54358 * 200.07602 * 17 16 15 19 19 O 1.42900 * 109.47558 * 69.99696 * 18 17 16 20 20 Si 1.86308 * 109.46941 * 189.99951 * 18 17 16 21 21 H 1.48508 * 109.46750 * 299.99587 * 20 18 17 22 22 H 1.48496 * 109.47226 * 59.99720 * 20 18 17 23 23 H 1.48498 * 109.47217 * 180.02562 * 20 18 17 24 24 C 1.31115 * 122.90527 * 20.04894 * 17 16 15 25 25 N 1.38926 * 121.85005 * 359.59476 * 24 17 16 26 26 C 1.47062 * 87.88674 * 27.34302 * 11 10 9 27 27 H 1.09005 * 109.47635 * 300.00258 * 1 2 3 28 28 H 1.09001 * 109.47239 * 60.00403 * 1 2 3 29 29 H 1.08997 * 109.47496 * 180.02562 * 1 2 3 30 30 H 1.09003 * 109.46953 * 179.97438 * 3 2 1 31 31 H 1.09001 * 109.46699 * 299.99928 * 3 2 1 32 32 H 1.08995 * 109.47556 * 59.99938 * 3 2 1 33 33 H 1.08997 * 109.46952 * 300.00537 * 4 2 1 34 34 H 1.09001 * 109.46800 * 59.99872 * 4 2 1 35 35 H 1.08997 * 109.47020 * 180.02562 * 4 2 1 36 36 H 1.08997 * 109.46789 * 179.97438 * 6 5 2 37 37 H 1.09003 * 109.47464 * 300.00186 * 6 5 2 38 38 H 1.09003 * 109.46998 * 59.99962 * 6 5 2 39 39 H 1.09002 * 109.46979 * 299.99625 * 7 5 2 40 40 H 1.09003 * 109.47154 * 60.00143 * 7 5 2 41 41 H 1.09001 * 109.47286 * 180.02562 * 7 5 2 42 42 H 1.09003 * 113.28247 * 343.06676 * 9 8 5 43 43 H 1.08996 * 113.46716 * 105.56747 * 10 9 8 44 44 H 1.08990 * 113.52038 * 335.13229 * 10 9 8 45 45 H 1.09008 * 109.81377 * 319.41213 * 14 12 11 46 46 H 1.09006 * 109.62009 * 300.21197 * 15 14 12 47 47 H 1.09002 * 109.62134 * 60.57808 * 15 14 12 48 48 H 1.09001 * 109.33388 * 70.68442 * 16 15 14 49 49 H 1.09001 * 109.33328 * 190.34479 * 16 15 14 50 50 H 1.09001 * 109.47227 * 309.99527 * 18 17 16 51 51 H 0.96696 * 114.00067 * 179.97438 * 19 18 17 52 52 H 1.08004 * 119.07448 * 179.62076 * 24 17 16 53 53 H 0.97000 * 120.55779 * 193.33726 * 25 24 17 54 54 H 1.08998 * 113.46736 * 87.43474 * 26 11 10 55 55 H 1.08998 * 113.46422 * 217.87103 * 26 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7213 -1.2491 5 14 2.1509 -0.8782 1.5213 6 6 1.5299 0.0002 3.0423 7 6 4.0139 -0.8775 1.5217 8 8 1.6072 -2.4158 1.5214 9 6 2.0292 -3.1815 2.6517 10 6 2.1847 -4.6828 2.3724 11 7 1.5824 -4.9373 3.6897 12 6 1.6441 -5.9185 4.6117 13 8 2.3418 -6.8911 4.4165 14 6 0.8511 -5.8039 5.8881 15 6 -0.6089 -6.2039 5.6318 16 6 -1.3891 -6.0655 6.9410 17 6 -0.6599 -6.7561 8.0581 18 6 -1.4328 -7.1406 9.2933 19 8 -2.3300 -8.2080 8.9808 20 14 -0.2478 -7.6937 10.6203 21 1 0.5260 -8.8650 10.1359 22 1 0.6845 -6.5844 10.9450 23 1 -1.0094 -8.0732 11.8372 24 6 0.6192 -7.0396 8.0057 25 7 1.3952 -6.7244 6.8973 26 6 0.8782 -3.6533 3.5552 27 1 -0.3634 0.5139 0.8900 28 1 -0.3634 0.5138 -0.8900 29 1 -0.3634 -1.0276 0.0005 30 1 3.1300 1.4425 0.0005 31 1 1.6766 1.9563 -0.8900 32 1 1.6767 1.9564 0.8899 33 1 1.6766 -1.7489 -1.2491 34 1 1.6766 -0.2076 -2.1391 35 1 3.1300 -0.7217 -1.2488 36 1 1.8928 -0.5138 3.9323 37 1 1.8932 1.0279 3.0423 38 1 0.4399 0.0003 3.0423 39 1 4.3776 -1.3912 0.6318 40 1 4.3769 0.1503 1.5219 41 1 4.3773 -1.3916 2.4115 42 1 2.8700 -2.7365 3.1839 43 1 3.2233 -5.0056 2.3003 44 1 1.5751 -5.0360 1.5408 45 1 0.8941 -4.7798 6.2591 46 1 -1.0413 -5.5470 4.8769 47 1 -0.6501 -7.2366 5.2853 48 1 -1.5028 -5.0089 7.1834 49 1 -2.3743 -6.5168 6.8235 50 1 -2.0008 -6.2809 9.6488 51 1 -2.8611 -8.5078 9.7312 52 1 1.0825 -7.5323 8.8478 53 1 2.2808 -7.1054 6.7909 54 1 -0.0764 -3.7342 3.0353 55 1 0.8035 -3.0992 4.4908 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_18362370_15413834.mol2 55 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 11:24:00 Heat of formation + Delta-G solvation = -98.246672 kcal Electronic energy + Delta-G solvation = -30756.969906 eV Core-core repulsion = 26726.041779 eV Total energy + Delta-G solvation = -4030.928127 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 356.209 amu Computer time = 1.14 seconds Orbital eigenvalues (eV) -41.81356 -40.31532 -38.98366 -37.34418 -36.79021 -36.51604 -33.31701 -33.24762 -30.28203 -29.29354 -29.01332 -27.80135 -27.47924 -27.29117 -26.74930 -25.31549 -23.75946 -22.69159 -20.46907 -20.30872 -19.20107 -18.94261 -18.39045 -18.25900 -17.81378 -17.07195 -16.37402 -16.30884 -15.96124 -15.36883 -15.34319 -15.26614 -14.88608 -14.80793 -14.77811 -14.56601 -14.42635 -14.26372 -13.99064 -13.95676 -13.84615 -13.50569 -13.33244 -13.26810 -13.14478 -13.13228 -13.06489 -12.90731 -12.88000 -12.80249 -12.48995 -12.33909 -12.09432 -11.75065 -11.71040 -11.65348 -11.57888 -11.47194 -11.30514 -11.25742 -10.92996 -10.27815 -10.09462 -10.02745 -9.90072 -8.46769 1.20585 1.24945 1.27747 1.38977 1.46478 1.53175 1.77494 1.80672 1.93668 2.14266 2.48382 2.55184 3.14299 3.30436 3.67653 3.71514 3.80229 3.97297 4.01611 4.08138 4.16665 4.17226 4.20673 4.37088 4.40053 4.46678 4.51706 4.58701 4.63771 4.65739 4.66633 4.69652 4.77601 4.80746 4.81928 4.85799 4.87489 4.88520 4.90804 5.05301 5.06403 5.14124 5.15052 5.20998 5.26094 5.30790 5.39672 5.46611 5.48829 5.54875 5.58671 5.64098 5.72734 6.25717 6.49920 6.72194 6.89659 6.96348 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.385 4.385 3 C -0.142 4.142 4 C -0.139 4.139 5 Si 1.323 2.677 6 C -0.515 4.515 7 C -0.525 4.525 8 O -0.612 6.612 9 C 0.082 3.918 10 C 0.089 3.911 11 N -0.643 5.643 12 C 0.542 3.458 13 O -0.577 6.577 14 C 0.146 3.854 15 C -0.121 4.121 16 C -0.051 4.051 17 C -0.246 4.246 18 C -0.055 4.055 19 O -0.568 6.568 20 Si 0.964 3.036 21 H -0.279 1.279 22 H -0.258 1.258 23 H -0.261 1.261 24 C 0.120 3.880 25 N -0.742 5.742 26 C 0.079 3.921 27 H 0.064 0.936 28 H 0.043 0.957 29 H 0.060 0.940 30 H 0.060 0.940 31 H 0.047 0.953 32 H 0.066 0.934 33 H 0.058 0.942 34 H 0.045 0.955 35 H 0.057 0.943 36 H 0.076 0.924 37 H 0.075 0.925 38 H 0.078 0.922 39 H 0.067 0.933 40 H 0.076 0.924 41 H 0.070 0.930 42 H 0.120 0.880 43 H 0.078 0.922 44 H 0.101 0.899 45 H 0.116 0.884 46 H 0.100 0.900 47 H 0.049 0.951 48 H 0.088 0.912 49 H 0.074 0.926 50 H 0.086 0.914 51 H 0.391 0.609 52 H 0.128 0.872 53 H 0.406 0.594 54 H 0.115 0.885 55 H 0.114 0.886 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.272 7.053 1.725 7.607 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.427 4.427 3 C -0.199 4.199 4 C -0.196 4.196 5 Si 1.453 2.547 6 C -0.617 4.617 7 C -0.626 4.626 8 O -0.569 6.569 9 C 0.024 3.976 10 C -0.033 4.033 11 N -0.379 5.379 12 C 0.332 3.668 13 O -0.457 6.457 14 C 0.037 3.963 15 C -0.159 4.159 16 C -0.088 4.088 17 C -0.256 4.256 18 C -0.167 4.167 19 O -0.376 6.376 20 Si 0.791 3.209 21 H -0.205 1.205 22 H -0.182 1.182 23 H -0.186 1.186 24 C 0.000 4.000 25 N -0.375 5.375 26 C -0.043 4.043 27 H 0.083 0.917 28 H 0.062 0.938 29 H 0.079 0.921 30 H 0.079 0.921 31 H 0.066 0.934 32 H 0.085 0.915 33 H 0.077 0.923 34 H 0.064 0.936 35 H 0.076 0.924 36 H 0.095 0.905 37 H 0.094 0.906 38 H 0.097 0.903 39 H 0.086 0.914 40 H 0.095 0.905 41 H 0.089 0.911 42 H 0.138 0.862 43 H 0.096 0.904 44 H 0.119 0.881 45 H 0.134 0.866 46 H 0.119 0.881 47 H 0.068 0.932 48 H 0.106 0.894 49 H 0.093 0.907 50 H 0.104 0.896 51 H 0.240 0.760 52 H 0.145 0.855 53 H 0.242 0.758 54 H 0.133 0.867 55 H 0.132 0.868 Dipole moment (debyes) X Y Z Total from point charges -1.266 6.103 1.596 6.434 hybrid contribution 0.321 -0.084 -0.103 0.347 sum -0.945 6.019 1.493 6.273 Atomic orbital electron populations 1.21552 0.93971 1.02029 1.01894 1.25990 1.00645 1.02876 1.13236 1.21612 1.01148 0.94922 1.02238 1.21560 1.00893 1.00177 0.96972 0.76116 0.61869 0.52421 0.64266 1.27071 1.07429 1.09687 1.17528 1.27218 1.25924 1.04932 1.04489 1.85421 1.78617 1.46654 1.46258 1.23356 0.97281 0.90680 0.86295 1.23473 1.00300 0.94002 0.85558 1.49209 1.47940 1.21487 1.19226 1.20435 0.81328 0.80108 0.84896 1.90727 1.43457 1.31939 1.79533 1.21039 0.93520 0.96151 0.85549 1.21811 0.92460 1.02083 0.99578 1.19997 0.97989 1.00600 0.90254 1.20227 0.92642 1.12920 0.99827 1.24428 0.98297 0.92593 1.01365 1.86484 1.56817 1.53202 1.41136 0.85545 0.78787 0.79649 0.76879 1.20489 1.18226 1.18585 1.20467 0.91992 0.97478 0.90060 1.44329 1.19640 1.52313 1.21201 1.23975 0.98069 0.80646 1.01583 0.91679 0.93771 0.92095 0.92071 0.93407 0.91540 0.92255 0.93634 0.92358 0.90490 0.90587 0.90331 0.91384 0.90496 0.91071 0.86248 0.90381 0.88116 0.86621 0.88132 0.93194 0.89367 0.90729 0.89602 0.75975 0.85452 0.75839 0.86680 0.86763 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 0.44 7.85 71.98 0.56 1.00 16 2 C -0.39 1.43 0.53 -10.80 -0.01 1.42 16 3 C -0.14 0.52 7.85 71.98 0.56 1.09 16 4 C -0.14 0.25 7.85 71.98 0.56 0.82 16 5 Si 1.32 -9.26 8.24 68.60 0.57 -8.69 16 6 C -0.51 3.98 8.65 113.37 0.98 4.97 16 7 C -0.52 2.55 8.64 113.37 0.98 3.53 16 8 O -0.61 3.46 8.61 -148.98 -1.28 2.18 16 9 C 0.08 -0.55 3.93 31.02 0.12 -0.43 16 10 C 0.09 -0.18 8.45 83.18 0.70 0.52 16 11 N -0.64 0.58 3.69 -858.37 -3.16 -2.59 16 12 C 0.54 2.69 7.35 87.66 0.64 3.33 16 13 O -0.58 -8.20 16.84 -3.04 -0.05 -8.26 16 14 C 0.15 0.11 3.19 44.32 0.14 0.25 16 15 C -0.12 -0.02 5.47 30.79 0.17 0.15 16 16 C -0.05 0.01 5.85 29.71 0.17 0.19 16 17 C -0.25 -0.66 5.40 -16.76 -0.09 -0.75 16 18 C -0.06 0.01 2.80 71.23 0.20 0.21 16 19 O -0.57 -1.02 12.86 -148.98 -1.92 -2.93 16 20 Si 0.96 0.15 25.20 68.60 1.73 1.88 16 21 H -0.28 -1.25 6.88 99.48 0.68 -0.56 16 22 H -0.26 -0.25 7.11 99.48 0.71 0.45 16 23 H -0.26 -0.07 7.11 99.48 0.71 0.64 16 24 C 0.12 0.46 9.62 83.41 0.80 1.27 16 25 N -0.74 -3.09 5.47 -328.99 -1.80 -4.89 16 26 C 0.08 -0.65 8.27 83.27 0.69 0.04 16 27 H 0.06 -0.34 7.79 -2.38 -0.02 -0.36 16 28 H 0.04 -0.05 8.14 -2.39 -0.02 -0.07 16 29 H 0.06 -0.20 7.96 -2.39 -0.02 -0.22 16 30 H 0.06 -0.29 7.79 -2.39 -0.02 -0.30 16 31 H 0.05 -0.08 8.14 -2.39 -0.02 -0.10 16 32 H 0.07 -0.37 7.79 -2.39 -0.02 -0.39 16 33 H 0.06 -0.10 7.96 -2.39 -0.02 -0.12 16 34 H 0.04 -0.01 8.14 -2.39 -0.02 -0.03 16 35 H 0.06 -0.16 7.79 -2.39 -0.02 -0.18 16 36 H 0.08 -0.72 7.96 -2.39 -0.02 -0.74 16 37 H 0.08 -0.55 7.79 -2.39 -0.02 -0.57 16 38 H 0.08 -0.62 7.79 -2.39 -0.02 -0.64 16 39 H 0.07 -0.23 7.79 -2.39 -0.02 -0.25 16 40 H 0.08 -0.38 7.79 -2.39 -0.02 -0.40 16 41 H 0.07 -0.41 7.31 -2.39 -0.02 -0.43 16 42 H 0.12 -1.20 6.49 -2.39 -0.02 -1.21 16 43 H 0.08 -0.04 8.14 -2.39 -0.02 -0.06 16 44 H 0.10 -0.22 8.14 -2.39 -0.02 -0.24 16 45 H 0.12 -0.52 8.14 -2.38 -0.02 -0.54 16 46 H 0.10 -0.47 8.14 -2.38 -0.02 -0.49 16 47 H 0.05 0.30 8.14 -2.39 -0.02 0.28 16 48 H 0.09 -0.40 8.14 -2.39 -0.02 -0.42 16 49 H 0.07 0.11 8.14 -2.39 -0.02 0.09 16 50 H 0.09 -0.37 7.96 -2.39 -0.02 -0.39 16 51 H 0.39 -2.68 8.74 -74.06 -0.65 -3.33 16 52 H 0.13 0.33 4.33 -2.91 -0.01 0.32 16 53 H 0.41 2.12 8.08 -92.71 -0.75 1.37 16 54 H 0.12 -1.15 8.14 -2.39 -0.02 -1.17 16 55 H 0.11 -1.51 8.14 -2.39 -0.02 -1.53 16 Total: 0.00 -18.76 430.50 1.48 -17.28 By element: Atomic # 1 Polarization: -11.78 SS G_CDS: 0.20 Total: -11.58 kcal Atomic # 6 Polarization: 10.40 SS G_CDS: 7.20 Total: 17.60 kcal Atomic # 7 Polarization: -2.51 SS G_CDS: -4.96 Total: -7.48 kcal Atomic # 8 Polarization: -5.76 SS G_CDS: -3.25 Total: -9.01 kcal Atomic # 14 Polarization: -9.11 SS G_CDS: 2.29 Total: -6.81 kcal Total: -18.76 1.48 -17.28 kcal The number of atoms in the molecule is 55 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_18362370_15413834.mol2 55 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -80.963 kcal (2) G-P(sol) polarization free energy of solvation -18.764 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -99.728 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.481 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -17.283 kcal (6) G-S(sol) free energy of system = (1) + (5) -98.247 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.14 seconds