Wall clock time and date at job start Sun Mar 7 2021 11:24:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.52995 * 109.47160 * 2 1 4 4 C 1.52998 * 109.46954 * 240.00329 * 2 1 3 5 5 Si 1.86297 * 109.47068 * 120.00146 * 2 1 3 6 6 C 1.86297 * 109.47343 * 300.00159 * 5 2 1 7 7 C 1.86296 * 109.47116 * 179.97438 * 5 2 1 8 8 O 1.63104 * 109.47014 * 60.00156 * 5 2 1 9 9 C 1.42900 * 113.99822 * 180.02562 * 8 5 2 10 10 C 1.53495 * 114.20583 * 150.00057 * 9 8 5 11 11 N 1.47068 * 87.98595 * 139.65180 * 10 9 8 12 12 C 1.34781 * 136.05396 * 152.84326 * 11 10 9 13 13 O 1.21278 * 120.00505 * 359.97438 * 12 11 10 14 14 C 1.50701 * 119.99419 * 179.72668 * 12 11 10 15 15 C 1.53038 * 109.32960 * 141.45683 * 14 12 11 16 16 C 1.53543 * 108.56152 * 169.82626 * 15 14 12 17 17 N 1.47028 * 107.65875 * 299.05362 * 16 15 14 18 18 C 1.38922 * 118.88675 * 43.66023 * 17 16 15 19 19 C 1.31114 * 121.84699 * 346.69261 * 18 17 16 20 20 C 1.50703 * 118.54527 * 180.42502 * 19 18 17 21 21 O 1.42901 * 109.46767 * 256.11516 * 20 19 18 22 22 Si 1.86293 * 109.47175 * 16.11751 * 20 19 18 23 23 H 1.48507 * 109.47319 * 299.99971 * 22 20 19 24 24 H 1.48500 * 109.47250 * 59.99865 * 22 20 19 25 25 H 1.48504 * 109.47316 * 180.02562 * 22 20 19 26 26 C 1.47064 * 87.88446 * 333.10214 * 11 10 9 27 27 H 1.09001 * 109.46917 * 300.00086 * 1 2 3 28 28 H 1.09002 * 109.46968 * 59.99715 * 1 2 3 29 29 H 1.08994 * 109.47201 * 179.97438 * 1 2 3 30 30 H 1.08995 * 109.47463 * 179.97438 * 3 2 1 31 31 H 1.08997 * 109.47218 * 300.00467 * 3 2 1 32 32 H 1.09008 * 109.46880 * 60.00049 * 3 2 1 33 33 H 1.09002 * 109.47180 * 300.00101 * 4 2 1 34 34 H 1.08997 * 109.47045 * 59.99764 * 4 2 1 35 35 H 1.08998 * 109.47143 * 179.97438 * 4 2 1 36 36 H 1.08997 * 109.47006 * 180.02562 * 6 5 2 37 37 H 1.09006 * 109.47056 * 300.00275 * 6 5 2 38 38 H 1.09005 * 109.47372 * 59.99707 * 6 5 2 39 39 H 1.09001 * 109.47598 * 300.00309 * 7 5 2 40 40 H 1.09002 * 109.47131 * 60.00285 * 7 5 2 41 41 H 1.08997 * 109.47485 * 180.02562 * 7 5 2 42 42 H 1.09003 * 113.28516 * 16.92826 * 9 8 5 43 43 H 1.08992 * 113.47337 * 24.86993 * 10 9 8 44 44 H 1.09005 * 113.52248 * 254.43777 * 10 9 8 45 45 H 1.08996 * 109.33202 * 21.80095 * 14 12 11 46 46 H 1.09000 * 109.62605 * 289.55032 * 15 14 12 47 47 H 1.09003 * 109.61911 * 49.92087 * 15 14 12 48 48 H 1.08996 * 109.82039 * 58.59568 * 16 15 14 49 49 H 1.09000 * 109.82343 * 179.51123 * 16 15 14 50 50 H 0.97004 * 120.55211 * 223.68532 * 17 16 15 51 51 H 1.08000 * 119.07443 * 166.68146 * 18 17 16 52 52 H 1.08999 * 109.46948 * 136.11418 * 20 19 18 53 53 H 0.96702 * 113.99073 * 179.97438 * 21 20 19 54 54 H 1.08997 * 113.47080 * 141.67950 * 26 11 10 55 55 H 1.09008 * 113.46433 * 272.11855 * 26 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0400 -0.7212 -1.2493 5 14 2.1510 -0.8783 1.5211 6 6 1.5300 -0.0002 3.0423 7 6 4.0140 -0.8789 1.5207 8 8 1.6074 -2.4160 1.5210 9 6 2.0286 -3.1814 2.6518 10 6 1.0409 -4.2786 3.0724 11 7 2.1972 -5.1550 3.3128 12 6 2.4671 -6.2091 4.1082 13 8 1.6172 -6.6333 4.8621 14 6 3.8234 -6.8639 4.0566 15 6 4.2481 -7.2617 5.4721 16 6 5.4987 -8.1472 5.3765 17 7 5.1389 -9.3453 4.6040 18 6 4.3763 -9.1972 3.4523 19 6 3.7569 -8.0761 3.1721 20 6 2.9417 -8.0004 1.9068 21 8 3.6584 -7.2523 0.9225 22 14 2.6241 -9.7217 1.2689 23 1 3.9189 -10.3910 0.9843 24 1 1.8795 -10.4991 2.2918 25 1 1.8213 -9.6472 0.0218 26 6 2.9312 -4.3711 2.3081 27 1 -0.3633 0.5139 0.8900 28 1 -0.3633 0.5139 -0.8900 29 1 -0.3633 -1.0276 -0.0005 30 1 3.1300 1.4425 0.0005 31 1 1.6767 1.9563 -0.8899 32 1 1.6767 1.9563 0.8901 33 1 1.6767 -1.7488 -1.2493 34 1 1.6766 -0.2073 -2.1392 35 1 3.1300 -0.7208 -1.2495 36 1 1.8938 -0.5138 3.9322 37 1 1.8933 1.0276 3.0423 38 1 0.4400 -0.0001 3.0423 39 1 4.3771 -1.3930 0.6307 40 1 4.3777 0.1486 1.5206 41 1 4.3774 -1.3932 2.4104 42 1 2.3926 -2.5679 3.4760 43 1 0.3992 -4.6196 2.2601 44 1 0.4830 -4.0381 3.9774 45 1 4.5483 -6.1607 3.6467 46 1 4.4766 -6.3667 6.0509 47 1 3.4414 -7.8136 5.9547 48 1 6.2969 -7.6059 4.8688 49 1 5.8245 -8.4359 6.3759 50 1 5.4289 -10.2244 4.8938 51 1 4.2913 -10.0289 2.7685 52 1 1.9914 -7.5093 2.1157 53 1 3.1922 -7.1633 0.0800 54 1 3.9780 -4.2082 2.5645 55 1 2.7981 -4.7370 1.2899 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_18362370_15608500.mol2 55 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 11:24:16 Heat of formation + Delta-G solvation = -97.737116 kcal Electronic energy + Delta-G solvation = -31904.612807 eV Core-core repulsion = 27873.706776 eV Total energy + Delta-G solvation = -4030.906031 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 356.209 amu Computer time = 1.15 seconds Orbital eigenvalues (eV) -41.79082 -40.28114 -38.74394 -37.44737 -36.78164 -36.42465 -33.59994 -32.86265 -30.12667 -29.27720 -29.00914 -27.79289 -27.40773 -27.24639 -26.75735 -25.65112 -23.15651 -22.86679 -20.39933 -20.20933 -19.05617 -18.75955 -18.40103 -18.36088 -17.98726 -16.90267 -16.80803 -16.06042 -15.91458 -15.41217 -15.25233 -15.09696 -14.88715 -14.78745 -14.68105 -14.58272 -14.32821 -14.21309 -13.95035 -13.87687 -13.79506 -13.62875 -13.48243 -13.33016 -13.14255 -13.11434 -12.89612 -12.87926 -12.81436 -12.69480 -12.33128 -12.31908 -12.19579 -11.74166 -11.66668 -11.64928 -11.63278 -11.45937 -11.39525 -11.22755 -10.78617 -10.26165 -10.18352 -10.01496 -9.74128 -8.46649 1.14390 1.19634 1.35707 1.39740 1.45603 1.62356 1.82342 1.86479 2.01734 2.15170 2.51978 2.63201 3.28698 3.48577 3.58824 3.75698 3.85969 3.95910 4.12765 4.13669 4.17854 4.18162 4.27893 4.33314 4.43914 4.50426 4.52482 4.54486 4.63939 4.68205 4.75095 4.75333 4.77084 4.78483 4.83367 4.86901 4.87721 4.87817 4.89442 4.91618 5.06229 5.15006 5.15849 5.17460 5.26346 5.27106 5.40279 5.44423 5.47479 5.50329 5.57906 5.64440 5.72122 6.29782 6.66722 6.87997 6.93002 7.10775 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.383 4.383 3 C -0.142 4.142 4 C -0.137 4.137 5 Si 1.321 2.679 6 C -0.523 4.523 7 C -0.515 4.515 8 O -0.612 6.612 9 C 0.082 3.918 10 C 0.089 3.911 11 N -0.645 5.645 12 C 0.557 3.443 13 O -0.584 6.584 14 C -0.026 4.026 15 C -0.129 4.129 16 C 0.125 3.875 17 N -0.747 5.747 18 C 0.144 3.856 19 C -0.255 4.255 20 C -0.056 4.056 21 O -0.551 6.551 22 Si 0.967 3.033 23 H -0.249 1.249 24 H -0.274 1.274 25 H -0.259 1.259 26 C 0.091 3.909 27 H 0.058 0.942 28 H 0.046 0.954 29 H 0.058 0.942 30 H 0.065 0.935 31 H 0.048 0.952 32 H 0.061 0.939 33 H 0.060 0.940 34 H 0.045 0.955 35 H 0.063 0.937 36 H 0.069 0.931 37 H 0.077 0.923 38 H 0.068 0.932 39 H 0.075 0.925 40 H 0.076 0.924 41 H 0.073 0.927 42 H 0.116 0.884 43 H 0.099 0.901 44 H 0.076 0.924 45 H 0.099 0.901 46 H 0.088 0.912 47 H 0.060 0.940 48 H 0.071 0.929 49 H 0.104 0.896 50 H 0.413 0.587 51 H 0.137 0.863 52 H 0.050 0.950 53 H 0.388 0.612 54 H 0.097 0.903 55 H 0.109 0.891 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.529 1.776 -1.545 5.104 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.425 4.425 3 C -0.199 4.199 4 C -0.194 4.194 5 Si 1.451 2.549 6 C -0.624 4.624 7 C -0.618 4.618 8 O -0.569 6.569 9 C 0.024 3.976 10 C -0.034 4.034 11 N -0.380 5.380 12 C 0.349 3.651 13 O -0.464 6.464 14 C -0.047 4.047 15 C -0.167 4.167 16 C 0.000 4.000 17 N -0.378 5.378 18 C 0.021 3.979 19 C -0.266 4.266 20 C -0.168 4.168 21 O -0.358 6.358 22 Si 0.793 3.207 23 H -0.174 1.174 24 H -0.199 1.199 25 H -0.183 1.183 26 C -0.031 4.031 27 H 0.077 0.923 28 H 0.065 0.935 29 H 0.077 0.923 30 H 0.084 0.916 31 H 0.067 0.933 32 H 0.080 0.920 33 H 0.079 0.921 34 H 0.064 0.936 35 H 0.081 0.919 36 H 0.088 0.912 37 H 0.096 0.904 38 H 0.087 0.913 39 H 0.094 0.906 40 H 0.095 0.905 41 H 0.092 0.908 42 H 0.134 0.866 43 H 0.117 0.883 44 H 0.095 0.905 45 H 0.117 0.883 46 H 0.107 0.893 47 H 0.079 0.921 48 H 0.089 0.911 49 H 0.122 0.878 50 H 0.249 0.751 51 H 0.154 0.846 52 H 0.068 0.932 53 H 0.237 0.763 54 H 0.116 0.884 55 H 0.127 0.873 Dipole moment (debyes) X Y Z Total from point charges 4.289 0.523 -0.935 4.420 hybrid contribution -0.552 0.587 -0.206 0.832 sum 3.737 1.110 -1.141 4.062 Atomic orbital electron populations 1.21559 0.94427 1.01891 1.01680 1.25942 1.00252 1.02941 1.13374 1.21612 1.01386 0.94853 1.02063 1.21549 1.01167 1.00153 0.96561 0.76157 0.62814 0.52265 0.63632 1.27192 1.06923 1.09959 1.18324 1.27095 1.24602 1.05073 1.04997 1.85409 1.78443 1.46817 1.46224 1.23260 0.95203 0.91185 0.87961 1.23406 0.91310 0.87169 1.01499 1.49335 1.18296 1.30776 1.39627 1.20439 0.90045 0.76811 0.77820 1.90680 1.50539 1.63356 1.41804 1.19592 0.92743 0.95786 0.96584 1.21851 0.99069 1.01330 0.94481 1.21679 0.95151 0.86019 0.97110 1.44616 1.57607 1.09826 1.25730 1.20596 0.90941 0.97234 0.89079 1.19562 1.11051 0.96829 0.99109 1.24432 0.95809 1.06679 0.89870 1.86490 1.47622 1.75974 1.25702 0.85496 0.79659 0.76025 0.79566 1.17361 1.19909 1.18311 1.23646 0.98313 0.87250 0.93908 0.92317 0.93529 0.92254 0.91645 0.93289 0.92020 0.92103 0.93636 0.91852 0.91167 0.90436 0.91255 0.90576 0.90521 0.90832 0.86646 0.88302 0.90504 0.88272 0.89345 0.92140 0.91070 0.87809 0.75098 0.84632 0.93244 0.76336 0.88446 0.87272 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 0.15 7.85 71.98 0.56 0.71 16 2 C -0.38 1.00 0.53 -10.79 -0.01 0.99 16 3 C -0.14 0.39 7.85 71.98 0.56 0.96 16 4 C -0.14 0.28 7.85 71.98 0.56 0.85 16 5 Si 1.32 -6.84 8.24 68.60 0.57 -6.27 16 6 C -0.52 1.82 8.64 113.37 0.98 2.80 16 7 C -0.52 2.72 8.65 113.37 0.98 3.70 16 8 O -0.61 2.04 8.61 -148.98 -1.28 0.75 16 9 C 0.08 -0.29 3.90 30.84 0.12 -0.17 16 10 C 0.09 0.07 8.46 83.18 0.70 0.78 16 11 N -0.64 -2.00 3.59 -859.41 -3.08 -5.09 16 12 C 0.56 4.76 5.44 87.66 0.48 5.24 16 13 O -0.58 -10.03 16.93 -3.02 -0.05 -10.09 16 14 C -0.03 -0.11 2.63 -12.43 -0.03 -0.14 16 15 C -0.13 -0.26 5.34 30.79 0.16 -0.10 16 16 C 0.12 -0.35 7.16 86.46 0.62 0.27 16 17 N -0.75 0.80 5.83 -345.90 -2.02 -1.22 16 18 C 0.14 0.36 9.60 83.42 0.80 1.16 16 19 C -0.25 -1.15 5.01 -16.76 -0.08 -1.23 16 20 C -0.06 -0.14 2.51 71.24 0.18 0.04 16 21 O -0.55 0.37 12.70 -148.98 -1.89 -1.53 16 22 Si 0.97 1.52 25.45 68.60 1.75 3.27 16 23 H -0.25 -0.32 6.67 99.48 0.66 0.35 16 24 H -0.27 -1.48 7.11 99.48 0.71 -0.77 16 25 H -0.26 -0.40 7.11 99.48 0.71 0.31 16 26 C 0.09 -0.28 8.00 83.09 0.66 0.39 16 27 H 0.06 -0.12 7.79 -2.39 -0.02 -0.14 16 28 H 0.05 0.01 8.14 -2.39 -0.02 -0.01 16 29 H 0.06 -0.05 7.97 -2.39 -0.02 -0.07 16 30 H 0.06 -0.29 7.79 -2.39 -0.02 -0.31 16 31 H 0.05 -0.06 8.14 -2.39 -0.02 -0.08 16 32 H 0.06 -0.24 7.79 -2.38 -0.02 -0.26 16 33 H 0.06 -0.13 7.97 -2.39 -0.02 -0.15 16 34 H 0.04 -0.02 8.14 -2.39 -0.02 -0.04 16 35 H 0.06 -0.24 7.79 -2.39 -0.02 -0.25 16 36 H 0.07 -0.29 7.31 -2.39 -0.02 -0.31 16 37 H 0.08 -0.30 7.79 -2.38 -0.02 -0.32 16 38 H 0.07 -0.16 7.79 -2.38 -0.02 -0.18 16 39 H 0.08 -0.39 7.79 -2.39 -0.02 -0.41 16 40 H 0.08 -0.40 7.79 -2.39 -0.02 -0.42 16 41 H 0.07 -0.46 7.96 -2.39 -0.02 -0.48 16 42 H 0.12 -0.78 6.49 -2.39 -0.02 -0.79 16 43 H 0.10 0.01 8.14 -2.39 -0.02 -0.01 16 44 H 0.08 0.14 8.14 -2.38 -0.02 0.13 16 45 H 0.10 0.13 7.49 -2.39 -0.02 0.11 16 46 H 0.09 -0.06 8.14 -2.39 -0.02 -0.08 16 47 H 0.06 0.46 7.52 -2.39 -0.02 0.44 16 48 H 0.07 -0.28 8.14 -2.39 -0.02 -0.30 16 49 H 0.10 -0.70 8.14 -2.39 -0.02 -0.72 16 50 H 0.41 -2.21 8.96 -92.71 -0.83 -3.04 16 51 H 0.14 0.05 4.40 -2.91 -0.01 0.04 16 52 H 0.05 0.23 6.58 -2.39 -0.02 0.22 16 53 H 0.39 -3.16 8.74 -74.06 -0.65 -3.81 16 54 H 0.10 -0.57 7.87 -2.39 -0.02 -0.59 16 55 H 0.11 -0.44 7.99 -2.38 -0.02 -0.46 16 Total: 0.00 -17.67 426.32 1.35 -16.32 By element: Atomic # 1 Polarization: -12.49 SS G_CDS: 0.10 Total: -12.39 kcal Atomic # 6 Polarization: 8.98 SS G_CDS: 7.26 Total: 16.24 kcal Atomic # 7 Polarization: -1.20 SS G_CDS: -5.10 Total: -6.30 kcal Atomic # 8 Polarization: -7.63 SS G_CDS: -3.23 Total: -10.86 kcal Atomic # 14 Polarization: -5.32 SS G_CDS: 2.31 Total: -3.01 kcal Total: -17.67 1.35 -16.32 kcal The number of atoms in the molecule is 55 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_18362370_15608500.mol2 55 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -81.418 kcal (2) G-P(sol) polarization free energy of solvation -17.666 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -99.084 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.347 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -16.319 kcal (6) G-S(sol) free energy of system = (1) + (5) -97.737 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.15 seconds