Wall clock time and date at job start Sun Mar 7 2021 11:33:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52998 * 109.46977 * 2 1 4 4 C 1.53002 * 109.46657 * 240.00274 * 2 1 3 5 5 Si 1.86300 * 109.47225 * 120.00262 * 2 1 3 6 6 C 1.86291 * 109.47214 * 299.99892 * 5 2 1 7 7 C 1.86304 * 109.46803 * 179.97438 * 5 2 1 8 8 O 1.63100 * 109.46990 * 59.99867 * 5 2 1 9 9 C 1.42904 * 113.99704 * 179.97438 * 8 5 2 10 10 C 1.53502 * 114.20409 * 150.00241 * 9 8 5 11 11 N 1.47062 * 87.98245 * 139.85259 * 10 9 8 12 12 C 1.34783 * 136.05239 * 152.84899 * 11 10 9 13 13 O 1.21272 * 120.00101 * 359.97438 * 12 11 10 14 14 C 1.50705 * 119.99502 * 179.97438 * 12 11 10 15 15 O 1.42901 * 109.46766 * 179.97438 * 14 12 11 16 16 C 1.35896 * 117.00049 * 180.02562 * 15 14 12 17 17 C 1.38717 * 120.05449 * 0.25021 * 16 15 14 18 18 C 1.38163 * 119.94349 * 180.21612 * 17 16 15 19 19 C 1.38251 * 120.05527 * 359.50941 * 18 17 16 20 20 C 1.38291 * 120.11088 * 0.28334 * 19 18 17 21 21 C 1.50690 * 119.96943 * 179.97438 * 20 19 18 22 22 O 1.42901 * 109.47333 * 119.99883 * 21 20 19 23 23 Si 1.86302 * 109.47418 * 359.97438 * 21 20 19 24 24 H 1.48501 * 109.46940 * 60.00192 * 23 21 20 25 25 H 1.48498 * 109.47142 * 180.02562 * 23 21 20 26 26 H 1.48500 * 109.46897 * 300.00124 * 23 21 20 27 27 C 1.38121 * 120.05358 * 359.95164 * 20 19 18 28 28 C 1.47066 * 87.88909 * 333.10014 * 11 10 9 29 29 H 1.09006 * 109.47118 * 299.99412 * 1 2 3 30 30 H 1.09006 * 109.47465 * 59.99763 * 1 2 3 31 31 H 1.08997 * 109.47360 * 179.97438 * 1 2 3 32 32 H 1.09000 * 109.47067 * 180.02562 * 3 2 1 33 33 H 1.08997 * 109.47086 * 300.00131 * 3 2 1 34 34 H 1.09000 * 109.47109 * 60.00489 * 3 2 1 35 35 H 1.08998 * 109.47505 * 299.99339 * 4 2 1 36 36 H 1.08993 * 109.47137 * 60.00166 * 4 2 1 37 37 H 1.09000 * 109.46923 * 179.97438 * 4 2 1 38 38 H 1.08997 * 109.47391 * 180.02562 * 6 5 2 39 39 H 1.09010 * 109.47190 * 300.00135 * 6 5 2 40 40 H 1.09006 * 109.47219 * 59.99737 * 6 5 2 41 41 H 1.09000 * 109.47141 * 299.99988 * 7 5 2 42 42 H 1.08992 * 109.47106 * 60.00317 * 7 5 2 43 43 H 1.09005 * 109.46441 * 180.02562 * 7 5 2 44 44 H 1.08993 * 113.27949 * 16.93348 * 9 8 5 45 45 H 1.08995 * 113.46812 * 25.06734 * 10 9 8 46 46 H 1.08996 * 113.51535 * 254.64165 * 10 9 8 47 47 H 1.09000 * 109.47027 * 59.99867 * 14 12 11 48 48 H 1.08994 * 109.46698 * 299.99380 * 14 12 11 49 49 H 1.07998 * 120.02558 * 359.97438 * 17 16 15 50 50 H 1.08002 * 119.97507 * 179.79516 * 18 17 16 51 51 H 1.07998 * 119.94295 * 180.25934 * 19 18 17 52 52 H 1.09009 * 109.47243 * 239.99897 * 21 20 19 53 53 H 0.96699 * 113.99948 * 299.99667 * 22 21 20 54 54 H 1.07998 * 120.02562 * 180.02562 * 27 20 19 55 55 H 1.08997 * 113.46673 * 141.68101 * 28 11 10 56 56 H 1.09007 * 113.46376 * 272.11983 * 28 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0399 -0.7212 -1.2493 5 14 2.1510 -0.8783 1.5211 6 6 1.5301 -0.0002 3.0422 7 6 4.0140 -0.8789 1.5206 8 8 1.6073 -2.4160 1.5210 9 6 2.0295 -3.1818 2.6513 10 6 1.0421 -4.2791 3.0723 11 7 2.1988 -5.1539 3.3163 12 6 2.4685 -6.2062 4.1142 13 8 1.6177 -6.6298 4.8674 14 6 3.8274 -6.8563 4.0702 15 8 3.8670 -7.9404 5.0003 16 6 5.0305 -8.6374 5.0862 17 6 6.1133 -8.2820 4.2954 18 6 7.2936 -8.9950 4.3813 19 6 7.3993 -10.0556 5.2619 20 6 6.3226 -10.4093 6.0544 21 6 6.4411 -11.5662 7.0126 22 8 6.2162 -11.1051 8.3464 23 14 8.1479 -12.3026 6.8891 24 1 9.1585 -11.2701 7.2324 25 1 8.2645 -13.4431 7.8330 26 1 8.3810 -12.7820 5.5031 27 6 5.1389 -9.7026 5.9687 28 6 2.9338 -4.3712 2.3113 29 1 -0.3634 0.5138 0.8901 30 1 -0.3634 0.5139 -0.8900 31 1 -0.3634 -1.0276 -0.0005 32 1 3.1299 1.4425 -0.0005 33 1 1.6766 1.9563 -0.8900 34 1 1.6767 1.9563 0.8900 35 1 1.6766 -1.7489 -1.2494 36 1 1.6765 -0.2073 -2.1392 37 1 3.1299 -0.7208 -1.2496 38 1 1.8938 -0.5137 3.9322 39 1 1.8934 1.0276 3.0423 40 1 0.4400 -0.0001 3.0422 41 1 4.3770 -1.3929 0.6305 42 1 4.3777 0.1486 1.5204 43 1 4.3773 -1.3932 2.4104 44 1 2.3942 -2.5685 3.4752 45 1 0.4021 -4.6222 2.2596 46 1 0.4826 -4.0372 3.9759 47 1 4.5896 -6.1232 4.3344 48 1 4.0178 -7.2323 3.0650 49 1 6.0325 -7.4510 3.6103 50 1 8.1359 -8.7207 3.7635 51 1 8.3241 -10.6091 5.3306 52 1 5.6996 -12.3244 6.7604 53 1 6.8409 -10.4273 8.6388 54 1 4.2985 -9.9789 6.5881 55 1 3.9800 -4.2069 2.5692 56 1 2.8027 -4.7393 1.2936 RHF calculation, no. of doubly occupied orbitals= 70 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_18362370_4860298.mol2 56 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 11:33:38 Heat of formation + Delta-G solvation = -123.117591 kcal Electronic energy + Delta-G solvation = -32676.466900 eV Core-core repulsion = 28290.289346 eV Total energy + Delta-G solvation = -4386.177554 eV No. of doubly occupied orbitals = 70 Molecular weight (most abundant/longest-lived isotopes) = 381.198 amu Computer time = 1.43 seconds Orbital eigenvalues (eV) -41.81342 -41.17947 -39.66846 -38.75245 -37.23164 -36.79381 -36.52142 -32.48763 -32.02252 -30.82566 -29.33722 -29.01907 -28.38745 -27.80521 -27.35573 -26.99844 -26.67057 -23.70572 -23.26867 -22.16094 -20.38947 -20.20147 -19.36540 -18.60642 -18.34644 -17.75856 -17.54527 -17.45550 -17.10810 -16.43642 -16.24012 -16.01962 -15.93130 -15.56130 -15.16686 -15.09121 -14.94560 -14.78980 -14.74424 -14.45477 -14.38135 -14.21062 -13.92939 -13.77800 -13.52979 -13.49022 -13.33219 -13.14003 -13.08924 -12.97230 -12.91117 -12.88259 -12.78578 -12.60572 -12.34432 -12.19179 -12.09787 -11.95759 -11.74161 -11.66011 -11.55951 -11.48847 -11.28504 -11.10077 -10.48673 -10.28641 -10.03280 -9.93531 -9.91230 -9.31102 0.19358 0.36513 1.03463 1.18161 1.28849 1.49046 1.54348 1.63006 1.80360 1.92678 2.14360 2.36111 2.50328 2.65679 3.14677 3.29554 3.52791 3.68249 3.76757 3.82006 3.95071 3.97831 4.06126 4.07717 4.16274 4.16810 4.20673 4.29918 4.38847 4.44926 4.50902 4.56234 4.62667 4.62950 4.65380 4.69539 4.77586 4.81703 4.85263 4.87019 4.88620 4.90843 4.97895 5.04973 5.13711 5.14691 5.22388 5.25687 5.34045 5.39346 5.42483 5.46147 5.48313 5.54077 5.64203 5.67037 5.72751 6.28371 6.45895 6.68804 6.86731 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.386 4.386 3 C -0.142 4.142 4 C -0.137 4.137 5 Si 1.325 2.675 6 C -0.526 4.526 7 C -0.513 4.513 8 O -0.612 6.612 9 C 0.081 3.919 10 C 0.090 3.910 11 N -0.646 5.646 12 C 0.543 3.457 13 O -0.574 6.574 14 C 0.048 3.952 15 O -0.322 6.322 16 C 0.114 3.886 17 C -0.202 4.202 18 C -0.071 4.071 19 C -0.170 4.170 20 C -0.083 4.083 21 C -0.091 4.091 22 O -0.555 6.555 23 Si 0.997 3.003 24 H -0.246 1.246 25 H -0.278 1.278 26 H -0.252 1.252 27 C -0.144 4.144 28 C 0.079 3.921 29 H 0.057 0.943 30 H 0.044 0.956 31 H 0.058 0.942 32 H 0.066 0.934 33 H 0.046 0.954 34 H 0.060 0.940 35 H 0.060 0.940 36 H 0.042 0.958 37 H 0.065 0.935 38 H 0.070 0.930 39 H 0.076 0.924 40 H 0.066 0.934 41 H 0.078 0.922 42 H 0.075 0.925 43 H 0.077 0.923 44 H 0.121 0.879 45 H 0.102 0.898 46 H 0.077 0.923 47 H 0.127 0.873 48 H 0.124 0.876 49 H 0.161 0.839 50 H 0.160 0.840 51 H 0.137 0.863 52 H 0.119 0.881 53 H 0.389 0.611 54 H 0.118 0.882 55 H 0.119 0.881 56 H 0.116 0.884 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.245 5.049 -5.469 10.387 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.428 4.428 3 C -0.199 4.199 4 C -0.194 4.194 5 Si 1.455 2.545 6 C -0.627 4.627 7 C -0.616 4.616 8 O -0.569 6.569 9 C 0.023 3.977 10 C -0.032 4.032 11 N -0.384 5.384 12 C 0.333 3.667 13 O -0.453 6.453 14 C -0.030 4.030 15 O -0.236 6.236 16 C 0.069 3.931 17 C -0.220 4.220 18 C -0.088 4.088 19 C -0.188 4.188 20 C -0.084 4.084 21 C -0.200 4.200 22 O -0.362 6.362 23 Si 0.820 3.180 24 H -0.169 1.169 25 H -0.204 1.204 26 H -0.176 1.176 27 C -0.162 4.162 28 C -0.042 4.042 29 H 0.076 0.924 30 H 0.063 0.937 31 H 0.077 0.923 32 H 0.085 0.915 33 H 0.065 0.935 34 H 0.079 0.921 35 H 0.079 0.921 36 H 0.062 0.938 37 H 0.084 0.916 38 H 0.089 0.911 39 H 0.095 0.905 40 H 0.085 0.915 41 H 0.097 0.903 42 H 0.094 0.906 43 H 0.096 0.904 44 H 0.138 0.862 45 H 0.120 0.880 46 H 0.095 0.905 47 H 0.145 0.855 48 H 0.142 0.858 49 H 0.178 0.822 50 H 0.178 0.822 51 H 0.154 0.846 52 H 0.137 0.863 53 H 0.238 0.762 54 H 0.136 0.864 55 H 0.137 0.863 56 H 0.134 0.866 Dipole moment (debyes) X Y Z Total from point charges 6.815 3.664 -5.081 9.257 hybrid contribution -0.566 1.123 0.084 1.260 sum 6.249 4.787 -4.997 9.324 Atomic orbital electron populations 1.21564 0.94611 1.01852 1.01600 1.26005 1.00140 1.03007 1.13650 1.21612 1.01466 0.94881 1.01969 1.21551 1.01280 1.00107 0.96487 0.76091 0.63126 0.52055 0.63238 1.27236 1.06856 1.10029 1.18542 1.27052 1.24015 1.05255 1.05299 1.85419 1.78489 1.46839 1.46181 1.23235 0.94995 0.91269 0.88165 1.23495 0.91197 0.86816 1.01709 1.49088 1.19173 1.30427 1.39684 1.20033 0.89471 0.78063 0.79124 1.90772 1.50359 1.62982 1.41163 1.22585 0.94975 0.89830 0.95575 1.86115 1.33604 1.44227 1.59656 1.19215 0.85225 0.92446 0.96235 1.21604 0.93218 1.04284 1.02920 1.21286 0.97680 0.93245 0.96613 1.21231 0.98553 1.00072 0.98924 1.20219 0.93081 0.97301 0.97793 1.25255 1.14944 0.97438 0.82385 1.86497 1.60269 1.61719 1.27729 0.85021 0.73687 0.79152 0.80177 1.16930 1.20389 1.17574 1.20295 0.99051 0.96406 1.00490 1.23906 0.99318 0.87267 0.93739 0.92386 0.93683 0.92257 0.91473 0.93465 0.92095 0.92092 0.93841 0.91606 0.91069 0.90519 0.91463 0.90258 0.90583 0.90369 0.86217 0.87978 0.90478 0.85521 0.85840 0.82196 0.82214 0.84580 0.86315 0.76175 0.86414 0.86256 0.86582 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 0.28 7.85 71.98 0.56 0.85 16 2 C -0.39 1.59 0.53 -10.79 -0.01 1.58 16 3 C -0.14 0.57 7.85 71.98 0.56 1.13 16 4 C -0.14 0.51 7.85 71.98 0.56 1.07 16 5 Si 1.33 -10.07 8.24 68.60 0.57 -9.50 16 6 C -0.53 2.70 8.64 113.37 0.98 3.67 16 7 C -0.51 4.50 8.65 113.37 0.98 5.48 16 8 O -0.61 3.82 8.62 -148.98 -1.28 2.54 16 9 C 0.08 -0.60 3.89 30.84 0.12 -0.48 16 10 C 0.09 -0.18 8.46 83.19 0.70 0.52 16 11 N -0.65 0.75 3.69 -859.37 -3.17 -2.42 16 12 C 0.54 3.09 8.15 87.66 0.71 3.81 16 13 O -0.57 -10.21 17.27 16.03 0.28 -9.93 16 14 C 0.05 -0.06 5.05 71.24 0.36 0.30 16 15 O -0.32 -2.52 9.67 -73.34 -0.71 -3.23 16 16 C 0.11 0.53 6.69 22.51 0.15 0.68 16 17 C -0.20 0.44 9.04 22.37 0.20 0.64 16 18 C -0.07 0.23 10.04 22.26 0.22 0.45 16 19 C -0.17 0.12 8.67 22.29 0.19 0.32 16 20 C -0.08 -0.21 5.39 -19.88 -0.11 -0.32 16 21 C -0.09 -0.09 2.82 71.23 0.20 0.11 16 22 O -0.56 -1.71 12.77 -148.98 -1.90 -3.61 16 23 Si 1.00 -1.46 25.07 68.60 1.72 0.26 16 24 H -0.25 0.60 7.11 99.48 0.71 1.31 16 25 H -0.28 -0.68 7.11 99.48 0.71 0.03 16 26 H -0.25 0.33 7.11 99.48 0.71 1.04 16 27 C -0.14 -0.93 9.55 22.36 0.21 -0.72 16 28 C 0.08 -0.77 8.26 83.10 0.69 -0.08 16 29 H 0.06 -0.16 7.79 -2.38 -0.02 -0.18 16 30 H 0.04 -0.02 8.14 -2.38 -0.02 -0.04 16 31 H 0.06 -0.11 7.97 -2.39 -0.02 -0.13 16 32 H 0.07 -0.41 7.79 -2.39 -0.02 -0.43 16 33 H 0.05 -0.10 8.14 -2.39 -0.02 -0.11 16 34 H 0.06 -0.30 7.79 -2.39 -0.02 -0.32 16 35 H 0.06 -0.23 7.96 -2.39 -0.02 -0.25 16 36 H 0.04 -0.07 8.14 -2.39 -0.02 -0.09 16 37 H 0.06 -0.39 7.79 -2.39 -0.02 -0.41 16 38 H 0.07 -0.43 7.31 -2.39 -0.02 -0.44 16 39 H 0.08 -0.40 7.79 -2.38 -0.02 -0.41 16 40 H 0.07 -0.23 7.79 -2.38 -0.02 -0.25 16 41 H 0.08 -0.72 7.79 -2.39 -0.02 -0.74 16 42 H 0.08 -0.61 7.79 -2.39 -0.02 -0.63 16 43 H 0.08 -0.83 7.96 -2.38 -0.02 -0.85 16 44 H 0.12 -1.28 6.49 -2.39 -0.02 -1.30 16 45 H 0.10 -0.24 8.14 -2.39 -0.02 -0.26 16 46 H 0.08 -0.01 8.14 -2.39 -0.02 -0.03 16 47 H 0.13 -1.05 7.65 -2.39 -0.02 -1.07 16 48 H 0.12 -0.91 7.67 -2.39 -0.02 -0.93 16 49 H 0.16 -1.47 6.30 -2.91 -0.02 -1.49 16 50 H 0.16 -1.50 8.06 -2.91 -0.02 -1.52 16 51 H 0.14 -0.55 4.88 -2.91 -0.01 -0.56 16 52 H 0.12 0.05 7.96 -2.38 -0.02 0.03 16 53 H 0.39 -1.50 8.70 -74.06 -0.64 -2.15 16 54 H 0.12 1.10 8.06 -2.91 -0.02 1.08 16 55 H 0.12 -1.88 8.14 -2.39 -0.02 -1.90 16 56 H 0.12 -1.33 8.14 -2.38 -0.02 -1.35 16 Total: 0.00 -25.00 450.31 3.77 -21.23 By element: Atomic # 1 Polarization: -15.33 SS G_CDS: 0.97 Total: -14.36 kcal Atomic # 6 Polarization: 11.71 SS G_CDS: 7.31 Total: 19.02 kcal Atomic # 7 Polarization: 0.75 SS G_CDS: -3.17 Total: -2.42 kcal Atomic # 8 Polarization: -10.61 SS G_CDS: -3.62 Total: -14.23 kcal Atomic # 14 Polarization: -11.52 SS G_CDS: 2.29 Total: -9.24 kcal Total: -25.00 3.77 -21.23 kcal The number of atoms in the molecule is 56 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_18362370_4860298.mol2 56 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -101.892 kcal (2) G-P(sol) polarization free energy of solvation -24.996 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -126.888 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.770 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -21.225 kcal (6) G-S(sol) free energy of system = (1) + (5) -123.118 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.44 seconds