Wall clock time and date at job start Sun Mar 7 2021 11:50:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 C 1.36771 * 125.80100 * 2 1 4 4 C 1.47259 * 126.94500 * 359.94619 * 3 2 1 5 5 O 1.21634 * 119.99541 * 359.97438 * 4 3 2 6 6 N 1.34773 * 119.99997 * 179.97438 * 4 3 2 7 7 C 1.47067 * 136.05694 * 359.63226 * 6 4 3 8 8 C 1.53760 * 87.88724 * 152.96130 * 7 6 4 9 9 O 1.42904 * 114.08772 * 139.77696 * 8 7 6 10 10 Si 1.63099 * 113.99861 * 116.56245 * 9 8 7 11 11 C 1.86299 * 109.46986 * 299.99995 * 10 9 8 12 12 C 1.86294 * 109.47206 * 59.99972 * 10 9 8 13 13 C 1.86296 * 109.46959 * 180.02562 * 10 9 8 14 14 C 1.52996 * 109.47511 * 59.99653 * 13 10 9 15 15 C 1.53006 * 109.46960 * 180.02562 * 13 10 9 16 16 C 1.53004 * 109.47084 * 299.99313 * 13 10 9 17 17 C 1.47067 * 136.05666 * 179.97438 * 6 4 3 18 18 C 1.46694 * 106.11110 * 179.97438 * 3 2 1 19 19 C 1.34488 * 106.33416 * 359.77406 * 18 3 2 20 20 C 1.50701 * 125.57072 * 180.21159 * 19 18 3 21 21 O 1.42901 * 109.47050 * 300.20357 * 20 19 18 22 22 Si 1.86294 * 109.46856 * 180.20584 * 20 19 18 23 23 H 1.48506 * 109.47246 * 59.99958 * 22 20 19 24 24 H 1.48506 * 109.47009 * 179.97438 * 22 20 19 25 25 H 1.48497 * 109.47361 * 299.99504 * 22 20 19 26 26 N 1.34663 * 125.79947 * 179.97438 * 2 1 3 27 27 H 1.08996 * 109.47155 * 269.99929 * 1 2 3 28 28 H 1.08999 * 109.46974 * 29.99990 * 1 2 3 29 29 H 1.09003 * 109.46760 * 149.99765 * 1 2 3 30 30 H 1.09004 * 113.46184 * 267.68861 * 7 6 4 31 31 H 1.08996 * 113.46702 * 38.13323 * 7 6 4 32 32 H 1.08993 * 114.39545 * 272.67539 * 8 7 6 33 33 H 1.09006 * 109.47379 * 60.00109 * 11 10 9 34 34 H 1.08996 * 109.47133 * 180.02562 * 11 10 9 35 35 H 1.08998 * 109.47303 * 300.00153 * 11 10 9 36 36 H 1.08999 * 109.47436 * 60.00239 * 12 10 9 37 37 H 1.09003 * 109.47369 * 180.02562 * 12 10 9 38 38 H 1.08998 * 109.47337 * 299.99850 * 12 10 9 39 39 H 1.09003 * 109.46757 * 59.99944 * 14 13 10 40 40 H 1.08994 * 109.47089 * 179.97438 * 14 13 10 41 41 H 1.08996 * 109.47159 * 300.00046 * 14 13 10 42 42 H 1.08998 * 109.47324 * 59.99863 * 15 13 10 43 43 H 1.08998 * 109.46851 * 179.97438 * 15 13 10 44 44 H 1.08999 * 109.46627 * 299.99446 * 15 13 10 45 45 H 1.09007 * 109.46453 * 60.00609 * 16 13 10 46 46 H 1.08998 * 109.47261 * 179.97438 * 16 13 10 47 47 H 1.08996 * 109.47316 * 300.00835 * 16 13 10 48 48 H 1.09003 * 113.46627 * 321.86788 * 17 6 4 49 49 H 1.09000 * 113.46667 * 92.30594 * 17 6 4 50 50 H 1.07998 * 126.82941 * 180.02562 * 18 3 2 51 51 H 1.08996 * 109.47089 * 60.20211 * 20 19 18 52 52 H 0.96703 * 114.00040 * 300.00311 * 21 20 19 53 53 H 0.97001 * 124.84905 * 359.97438 * 26 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3071 1.1093 0.0000 4 6 1.8703 2.5156 -0.0011 5 8 0.6839 2.7839 -0.0026 6 7 2.7851 3.5053 -0.0004 7 6 4.2533 3.5903 0.0078 8 6 4.1218 4.9500 -0.6980 9 8 5.0374 5.9417 -0.2285 10 14 6.0982 6.4525 -1.3572 11 6 7.1114 5.0082 -1.9557 12 6 5.1696 7.1961 -2.7908 13 6 7.2257 7.7358 -0.6140 14 6 7.9883 7.1245 0.5631 15 6 8.2205 8.2154 -1.6730 16 6 6.3940 8.9221 -0.1221 17 6 2.7544 4.9757 -0.0015 18 6 3.6883 0.6150 0.0006 19 6 3.6096 -0.7275 0.0060 20 6 4.7819 -1.6744 0.0132 21 8 5.5815 -1.4513 -1.1500 22 14 4.1614 -3.4310 0.0126 23 1 3.3425 -3.6662 -1.2037 24 1 5.3167 -4.3641 0.0190 25 1 3.3305 -3.6629 1.2213 26 7 2.2948 -1.0922 0.0005 27 1 -0.3633 0.0000 1.0276 28 1 -0.3633 0.8900 -0.5138 29 1 -0.3633 -0.8900 -0.5139 30 1 4.6783 3.6604 1.0091 31 1 4.7357 2.8273 -0.6031 32 1 4.0684 4.8897 -1.7849 33 1 6.4520 4.2570 -2.3904 34 1 7.8207 5.3496 -2.7097 35 1 7.6547 4.5731 -1.1169 36 1 4.5768 8.0412 -2.4407 37 1 5.8786 7.5371 -3.5454 38 1 4.5102 6.4450 -3.2256 39 1 8.5808 6.2794 0.2126 40 1 8.6483 7.8753 0.9976 41 1 7.2793 6.7833 1.3174 42 1 7.6769 8.6510 -2.5113 43 1 8.8799 8.9665 -1.2383 44 1 8.8131 7.3705 -2.0238 45 1 5.6850 8.5807 0.6322 46 1 7.0536 9.6727 0.3131 47 1 5.8507 9.3575 -0.9607 48 1 1.9599 5.3928 -0.6204 49 1 2.7840 5.4112 0.9972 50 1 4.5891 1.2108 0.0012 51 1 5.3830 -1.5017 0.9059 52 1 5.1101 -1.5871 -1.9833 53 1 1.9733 -2.0074 0.0013 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_18362370_9865296.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 11:50:55 Heat of formation + Delta-G solvation = -76.577119 kcal Electronic energy + Delta-G solvation = -30453.123280 eV Core-core repulsion = 26450.446294 eV Total energy + Delta-G solvation = -4002.676986 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 354.193 amu Computer time = 1.17 seconds Orbital eigenvalues (eV) -42.56012 -41.22829 -39.05440 -37.70093 -36.77923 -36.44351 -32.83971 -32.52051 -30.00371 -29.27479 -29.00366 -28.77577 -27.78773 -27.35465 -27.01415 -25.50847 -23.65774 -21.95402 -21.60499 -20.33911 -19.60473 -18.69436 -18.38685 -17.94138 -17.01717 -16.77560 -16.65281 -16.12131 -15.96265 -15.62219 -15.37328 -15.10680 -14.95004 -14.77263 -14.67830 -14.59821 -14.33496 -14.10744 -13.94175 -13.80656 -13.71780 -13.48482 -13.40848 -13.31889 -13.13187 -13.00779 -12.89227 -12.86276 -12.75205 -12.69428 -12.57357 -12.32638 -12.25956 -12.05040 -11.70732 -11.63864 -11.45346 -11.21582 -11.02285 -10.46896 -10.25124 -10.04127 -10.00760 -9.71547 -9.16426 0.62175 1.03296 1.22883 1.32185 1.36445 1.41812 1.79272 1.82551 1.91329 2.15360 2.17733 2.43675 2.55611 3.28530 3.43903 3.59406 3.75912 3.82899 3.89446 4.12783 4.17969 4.18275 4.18482 4.37094 4.48673 4.53271 4.54811 4.61125 4.62105 4.67089 4.67700 4.69107 4.79090 4.83551 4.84441 4.87307 4.88545 4.88869 4.90904 5.06579 5.07560 5.15297 5.15971 5.21987 5.27107 5.40435 5.47711 5.50370 5.56939 5.65243 5.65806 5.72948 5.84125 6.35469 6.67171 6.68927 7.17756 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.097 4.097 2 C 0.118 3.882 3 C -0.260 4.260 4 C 0.617 3.383 5 O -0.587 6.587 6 N -0.645 5.645 7 C 0.081 3.919 8 C 0.084 3.916 9 O -0.613 6.613 10 Si 1.319 2.681 11 C -0.515 4.515 12 C -0.522 4.522 13 C -0.382 4.382 14 C -0.137 4.137 15 C -0.142 4.142 16 C -0.139 4.139 17 C 0.093 3.907 18 C -0.137 4.137 19 C -0.025 4.025 20 C -0.044 4.044 21 O -0.544 6.544 22 Si 0.962 3.038 23 H -0.247 1.247 24 H -0.259 1.259 25 H -0.252 1.252 26 N -0.542 5.542 27 H 0.084 0.916 28 H 0.082 0.918 29 H 0.091 0.909 30 H 0.107 0.893 31 H 0.103 0.897 32 H 0.118 0.882 33 H 0.073 0.927 34 H 0.076 0.924 35 H 0.075 0.925 36 H 0.069 0.931 37 H 0.077 0.923 38 H 0.069 0.931 39 H 0.063 0.937 40 H 0.045 0.955 41 H 0.059 0.941 42 H 0.061 0.939 43 H 0.048 0.952 44 H 0.065 0.935 45 H 0.058 0.942 46 H 0.046 0.954 47 H 0.059 0.941 48 H 0.080 0.920 49 H 0.099 0.901 50 H 0.163 0.837 51 H 0.138 0.862 52 H 0.390 0.610 53 H 0.423 0.577 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.323 -3.651 -1.528 5.168 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.002 4.002 3 C -0.270 4.270 4 C 0.411 3.589 5 O -0.469 6.469 6 N -0.380 5.380 7 C -0.041 4.041 8 C 0.026 3.974 9 O -0.570 6.570 10 Si 1.449 2.551 11 C -0.617 4.617 12 C -0.623 4.623 13 C -0.425 4.425 14 C -0.195 4.195 15 C -0.199 4.199 16 C -0.196 4.196 17 C -0.029 4.029 18 C -0.161 4.161 19 C -0.134 4.134 20 C -0.156 4.156 21 O -0.350 6.350 22 Si 0.784 3.216 23 H -0.171 1.171 24 H -0.183 1.183 25 H -0.176 1.176 26 N -0.142 5.142 27 H 0.102 0.898 28 H 0.100 0.900 29 H 0.110 0.890 30 H 0.125 0.875 31 H 0.121 0.879 32 H 0.135 0.865 33 H 0.092 0.908 34 H 0.095 0.905 35 H 0.095 0.905 36 H 0.088 0.912 37 H 0.096 0.904 38 H 0.088 0.912 39 H 0.082 0.918 40 H 0.064 0.936 41 H 0.078 0.922 42 H 0.080 0.920 43 H 0.067 0.933 44 H 0.084 0.916 45 H 0.077 0.923 46 H 0.065 0.935 47 H 0.078 0.922 48 H 0.098 0.902 49 H 0.117 0.883 50 H 0.180 0.820 51 H 0.156 0.844 52 H 0.239 0.761 53 H 0.263 0.737 Dipole moment (debyes) X Y Z Total from point charges 2.642 -4.498 -0.818 5.280 hybrid contribution -0.216 0.401 -0.578 0.736 sum 2.426 -4.097 -1.397 4.962 Atomic orbital electron populations 1.20622 0.86094 1.04648 1.04076 1.20523 0.94278 0.85519 0.99890 1.20052 0.94564 0.90941 1.21441 1.17071 0.83426 0.83817 0.74594 1.90736 1.17534 1.84576 1.54093 1.48947 1.08751 1.07050 1.73261 1.23916 0.79938 0.97105 1.03159 1.23340 0.88871 0.87219 0.97972 1.85413 1.53258 1.56666 1.61654 0.76196 0.59150 0.63589 0.56123 1.27088 1.11135 1.16353 1.07165 1.27180 1.09694 1.08117 1.17355 1.25937 1.06245 1.08673 1.01634 1.21550 0.99963 1.00548 0.97402 1.21611 0.98731 1.01485 0.98055 1.21561 0.99463 0.97363 1.01182 1.23390 0.97340 0.79714 1.02484 1.22181 0.95434 0.93064 1.05379 1.20902 0.84630 0.95910 1.11915 1.24473 0.91836 1.06312 0.92982 1.86532 1.39499 1.92973 1.16033 0.85503 0.80287 0.74523 0.81289 1.17078 1.18315 1.17615 1.41742 1.05596 1.08632 1.58200 0.89784 0.89965 0.89044 0.87544 0.87924 0.86479 0.90830 0.90462 0.90545 0.91206 0.90379 0.91178 0.91809 0.93592 0.92228 0.91976 0.93278 0.91624 0.92322 0.93503 0.92249 0.90196 0.88321 0.81993 0.84442 0.76098 0.73699 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -0.14 9.88 71.24 0.70 0.56 16 2 C 0.12 0.39 7.17 41.78 0.30 0.69 16 3 C -0.26 -1.66 6.29 -19.04 -0.12 -1.78 16 4 C 0.62 6.52 8.06 86.62 0.70 7.22 16 5 O -0.59 -10.10 15.59 -4.14 -0.06 -10.16 16 6 N -0.64 -3.15 3.69 -862.44 -3.18 -6.33 16 7 C 0.08 -0.16 7.06 83.27 0.59 0.43 16 8 C 0.08 -0.21 3.92 31.01 0.12 -0.08 16 9 O -0.61 1.46 8.61 -148.98 -1.28 0.17 16 10 Si 1.32 -5.95 8.24 68.60 0.57 -5.38 16 11 C -0.52 2.42 8.65 113.37 0.98 3.40 16 12 C -0.52 1.55 8.64 113.37 0.98 2.52 16 13 C -0.38 0.78 0.53 -10.79 -0.01 0.78 16 14 C -0.14 0.19 7.85 71.98 0.56 0.76 16 15 C -0.14 0.34 7.85 71.98 0.56 0.90 16 16 C -0.14 0.07 7.85 71.98 0.56 0.64 16 17 C 0.09 0.18 8.45 83.17 0.70 0.89 16 18 C -0.14 -0.21 9.99 23.62 0.24 0.03 16 19 C -0.03 0.04 6.11 40.98 0.25 0.29 16 20 C -0.04 0.23 2.98 71.24 0.21 0.44 16 21 O -0.54 2.07 12.87 -148.98 -1.92 0.16 16 22 Si 0.96 -5.71 26.22 68.60 1.80 -3.91 16 23 H -0.25 1.52 7.11 99.48 0.71 2.23 16 24 H -0.26 0.55 7.11 99.48 0.71 1.26 16 25 H -0.25 1.27 7.11 99.48 0.71 1.98 16 26 N -0.54 0.86 5.41 -171.06 -0.93 -0.06 16 27 H 0.08 0.07 8.14 -2.39 -0.02 0.05 16 28 H 0.08 0.54 6.46 -2.39 -0.02 0.53 16 29 H 0.09 -0.38 8.14 -2.39 -0.02 -0.40 16 30 H 0.11 -0.36 8.14 -2.38 -0.02 -0.38 16 31 H 0.10 -0.51 6.12 -2.39 -0.01 -0.53 16 32 H 0.12 -0.65 6.50 -2.39 -0.02 -0.67 16 33 H 0.07 -0.40 7.96 -2.38 -0.02 -0.42 16 34 H 0.08 -0.37 7.79 -2.39 -0.02 -0.39 16 35 H 0.08 -0.35 7.79 -2.39 -0.02 -0.37 16 36 H 0.07 -0.13 7.79 -2.39 -0.02 -0.15 16 37 H 0.08 -0.27 7.79 -2.39 -0.02 -0.29 16 38 H 0.07 -0.24 7.31 -2.39 -0.02 -0.26 16 39 H 0.06 -0.20 7.79 -2.39 -0.02 -0.22 16 40 H 0.04 0.00 8.14 -2.39 -0.02 -0.02 16 41 H 0.06 -0.07 7.96 -2.39 -0.02 -0.09 16 42 H 0.06 -0.22 7.79 -2.39 -0.02 -0.24 16 43 H 0.05 -0.04 8.14 -2.39 -0.02 -0.06 16 44 H 0.06 -0.27 7.79 -2.39 -0.02 -0.29 16 45 H 0.06 -0.01 7.97 -2.38 -0.02 -0.03 16 46 H 0.05 0.03 8.14 -2.39 -0.02 0.01 16 47 H 0.06 -0.10 7.79 -2.39 -0.02 -0.12 16 48 H 0.08 0.20 8.14 -2.39 -0.02 0.18 16 49 H 0.10 0.14 8.14 -2.39 -0.02 0.12 16 50 H 0.16 -0.26 5.48 -2.91 -0.02 -0.28 16 51 H 0.14 -0.96 7.96 -2.39 -0.02 -0.98 16 52 H 0.39 -3.74 8.70 -74.06 -0.64 -4.39 16 53 H 0.42 -2.76 6.70 -92.71 -0.62 -3.38 16 Total: 0.00 -18.17 419.80 2.73 -15.44 By element: Atomic # 1 Polarization: -7.99 SS G_CDS: 0.40 Total: -7.59 kcal Atomic # 6 Polarization: 10.33 SS G_CDS: 7.34 Total: 17.67 kcal Atomic # 7 Polarization: -2.28 SS G_CDS: -4.11 Total: -6.39 kcal Atomic # 8 Polarization: -6.57 SS G_CDS: -3.26 Total: -9.83 kcal Atomic # 14 Polarization: -11.66 SS G_CDS: 2.36 Total: -9.30 kcal Total: -18.17 2.73 -15.44 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_18362370_9865296.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -61.138 kcal (2) G-P(sol) polarization free energy of solvation -18.173 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -79.311 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.734 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -15.439 kcal (6) G-S(sol) free energy of system = (1) + (5) -76.577 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.17 seconds