Wall clock time and date at job start Sun Mar 7 2021 08:55:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45196 * 1 3 3 C 1.34234 * 116.99938 * 2 1 4 4 O 1.20822 * 119.99973 * 0.02562 * 3 2 1 5 5 C 1.50700 * 120.00068 * 179.97438 * 3 2 1 6 6 N 1.46503 * 112.85041 * 23.80295 * 5 3 2 7 7 C 1.34779 * 119.99789 * 309.66797 * 6 5 3 8 8 O 1.21696 * 120.00583 * 0.02562 * 7 6 5 9 9 C 1.46428 * 119.99629 * 179.97438 * 7 6 5 10 10 C 1.34812 * 119.99799 * 179.97438 * 9 7 6 11 11 C 1.47212 * 120.00096 * 179.97438 * 10 9 7 12 12 C 1.39835 * 120.16739 * 359.72777 * 11 10 9 13 13 C 1.37884 * 119.82508 * 179.78802 * 12 11 10 14 14 C 1.38403 * 120.17199 * 0.46419 * 13 12 11 15 15 C 1.50701 * 119.83044 * 179.76248 * 14 13 12 16 16 O 1.42902 * 109.47291 * 120.02275 * 15 14 13 17 17 Si 1.86303 * 109.47034 * 0.02562 * 15 14 13 18 18 C 1.38402 * 120.34560 * 359.78956 * 14 13 12 19 19 C 1.37897 * 120.16764 * 359.97438 * 18 14 13 20 20 C 1.53784 * 113.61378 * 252.49997 * 5 3 2 21 21 C 1.53774 * 87.07946 * 220.01668 * 20 5 3 22 22 O 1.42900 * 113.69511 * 270.87191 * 21 20 5 23 23 C 1.53000 * 113.61399 * 139.97839 * 21 20 5 24 24 F 1.39898 * 109.47486 * 322.50528 * 23 21 20 25 25 F 1.39908 * 109.47107 * 82.50432 * 23 21 20 26 26 F 1.39908 * 109.47318 * 202.50144 * 23 21 20 27 27 C 1.53775 * 113.61501 * 155.00045 * 5 3 2 28 28 H 1.08996 * 109.47465 * 299.99911 * 1 2 3 29 29 H 1.08999 * 109.47008 * 59.99921 * 1 2 3 30 30 H 1.09006 * 109.46832 * 179.97438 * 1 2 3 31 31 H 0.96996 * 120.00095 * 129.66719 * 6 5 3 32 32 H 1.07995 * 120.00495 * 0.02562 * 9 7 6 33 33 H 1.07998 * 120.00150 * 0.02562 * 10 9 7 34 34 H 1.08007 * 120.08766 * 0.02562 * 12 11 10 35 35 H 1.08005 * 119.91555 * 180.22607 * 13 12 11 36 36 H 1.08996 * 109.47525 * 240.02324 * 15 14 13 37 37 H 0.96705 * 113.99349 * 300.00581 * 16 15 14 38 38 H 1.48501 * 109.99719 * 58.68073 * 17 15 14 39 39 H 1.48499 * 110.00018 * 179.97438 * 17 15 14 40 40 H 1.07999 * 119.91686 * 179.97438 * 18 14 13 41 41 H 1.07992 * 120.08468 * 180.02562 * 19 18 14 42 42 H 1.09001 * 113.61326 * 334.56841 * 20 5 3 43 43 H 1.09001 * 113.61595 * 105.46840 * 20 5 3 44 44 H 0.96703 * 113.99738 * 277.53766 * 22 21 20 45 45 H 1.08996 * 113.61430 * 254.52730 * 27 5 3 46 46 H 1.08999 * 113.61356 * 25.34717 * 27 5 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4033 2.2093 0.0005 5 6 3.5663 1.2749 0.0006 6 7 4.1993 0.0711 -0.5438 7 6 3.8374 -1.1449 -0.0890 8 8 2.9844 -1.2430 0.7735 9 6 4.4697 -2.3482 -0.6335 10 6 4.1080 -3.5645 -0.1783 11 6 4.7433 -4.7742 -0.7261 12 6 5.7182 -4.6661 -1.7228 13 6 6.3117 -5.8036 -2.2277 14 6 5.9381 -7.0505 -1.7575 15 6 6.5880 -8.2890 -2.3186 16 8 7.2435 -9.0010 -1.2673 17 14 7.8374 -7.8028 -3.6123 18 6 4.9702 -7.1661 -0.7749 19 6 4.3709 -6.0376 -0.2565 20 6 4.1587 1.7306 1.3446 21 6 5.1632 2.5627 0.5301 22 8 6.3551 1.8518 0.1895 23 6 5.4448 3.9420 1.1294 24 9 4.2648 4.4665 1.6676 25 9 6.4059 3.8242 2.1393 26 9 5.9215 4.7965 0.1294 27 6 4.1148 2.5823 -0.5949 28 1 -0.3634 0.5138 0.8899 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3633 -1.0277 -0.0005 31 1 4.8789 0.1492 -1.2315 32 1 5.2263 -2.2613 -1.3992 33 1 3.3517 -3.6514 0.5877 34 1 6.0082 -3.6939 -2.0933 35 1 7.0675 -5.7216 -2.9949 36 1 5.8273 -8.9261 -2.7696 37 1 7.9347 -8.4936 -0.8200 38 1 8.8626 -6.9081 -3.0173 39 1 8.4860 -9.0153 -4.1731 40 1 4.6836 -8.1426 -0.4134 41 1 3.6161 -6.1293 0.5104 42 1 3.4745 2.3337 1.9413 43 1 4.6204 0.9240 1.9142 44 1 7.0182 1.8360 0.8931 45 1 4.5411 2.4633 -1.5910 46 1 3.4180 3.4179 -0.5297 There are 73 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 73 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_18364788_12360594.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 08:55:08 Heat of formation + Delta-G solvation = -253.723051 kcal Electronic energy + Delta-G solvation = -38654.347533 eV Core-core repulsion = 32870.292062 eV Total energy + Delta-G solvation = -5784.055472 eV No. of doubly occupied orbitals = 73 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 402.121 amu Computer time = 1.49 seconds Orbital eigenvalues (eV) -51.29582 -48.83982 -48.76270 -42.64563 -40.74291 -40.53705 -39.89254 -37.88983 -37.58215 -36.50149 -35.01069 -34.15280 -32.16473 -31.26182 -29.66404 -28.54516 -27.57782 -27.12617 -25.59803 -24.25945 -23.84214 -22.55524 -22.11031 -20.72492 -20.54388 -20.14014 -19.58898 -19.49641 -18.89486 -18.86977 -18.26445 -17.71722 -17.50010 -17.32267 -16.94581 -16.47457 -16.37411 -16.19173 -16.05513 -15.68306 -15.62088 -15.43849 -15.20870 -15.19102 -15.11440 -15.02313 -14.93631 -14.85018 -14.74611 -14.48458 -14.45275 -14.16489 -14.05398 -13.84226 -13.71910 -13.53984 -13.21519 -13.06959 -12.94551 -12.79376 -12.27323 -12.23857 -12.06735 -11.91246 -11.80112 -11.58926 -11.42074 -11.25181 -10.89826 -10.60021 -10.30195 -9.93725 -9.19470 -4.90539 -0.48470 0.43961 0.82972 0.97293 1.30910 1.32875 1.61580 1.72075 1.87335 1.98507 2.22824 2.30759 2.45758 2.49847 2.67794 2.85687 2.98257 3.25864 3.35590 3.41251 3.55810 3.68274 3.75856 3.85702 3.99599 4.08319 4.20802 4.21243 4.25620 4.27029 4.28577 4.37671 4.40524 4.49128 4.51107 4.55711 4.60209 4.65203 4.89697 5.02818 5.14412 5.19716 5.25023 5.29394 5.43810 5.52156 5.66167 5.94700 6.22088 6.48258 6.50865 6.56561 7.25198 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.023 3.977 2 O -0.321 6.321 3 C 0.465 3.535 4 O -0.529 6.529 5 C 0.169 3.831 6 N -0.685 5.685 7 C 0.542 3.458 8 O -0.537 6.537 9 C -0.200 4.200 10 C -0.020 4.020 11 C -0.078 4.078 12 C -0.095 4.095 13 C -0.122 4.122 14 C -0.111 4.111 15 C -0.088 4.088 16 O -0.550 6.550 17 Si 0.770 3.230 18 C -0.108 4.108 19 C -0.103 4.103 20 C -0.148 4.148 21 C 0.086 3.914 22 O -0.501 6.501 23 C 0.435 3.565 24 F -0.179 7.179 25 F -0.181 7.181 26 F -0.177 7.177 27 C -0.099 4.099 28 H 0.057 0.943 29 H 0.063 0.937 30 H 0.117 0.883 31 H 0.428 0.572 32 H 0.162 0.838 33 H 0.125 0.875 34 H 0.159 0.841 35 H 0.149 0.851 36 H 0.123 0.877 37 H 0.386 0.614 38 H -0.278 1.278 39 H -0.309 1.309 40 H 0.127 0.873 41 H 0.136 0.864 42 H 0.112 0.888 43 H 0.112 0.888 44 H 0.409 0.591 45 H 0.137 0.863 46 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.080 -1.053 -4.391 5.466 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.234 6.234 3 C 0.307 3.693 4 O -0.418 6.418 5 C 0.078 3.922 6 N -0.341 5.341 7 C 0.333 3.667 8 O -0.415 6.415 9 C -0.220 4.220 10 C -0.040 4.040 11 C -0.078 4.078 12 C -0.112 4.112 13 C -0.140 4.140 14 C -0.111 4.111 15 C -0.196 4.196 16 O -0.358 6.358 17 Si 0.675 3.325 18 C -0.127 4.127 19 C -0.121 4.121 20 C -0.187 4.187 21 C 0.042 3.958 22 O -0.310 6.310 23 C 0.381 3.619 24 F -0.161 7.161 25 F -0.162 7.162 26 F -0.159 7.159 27 C -0.137 4.137 28 H 0.075 0.925 29 H 0.082 0.918 30 H 0.135 0.865 31 H 0.268 0.732 32 H 0.179 0.821 33 H 0.142 0.858 34 H 0.176 0.824 35 H 0.166 0.834 36 H 0.141 0.859 37 H 0.235 0.765 38 H -0.205 1.205 39 H -0.237 1.237 40 H 0.145 0.855 41 H 0.154 0.846 42 H 0.130 0.870 43 H 0.131 0.869 44 H 0.262 0.738 45 H 0.155 0.845 46 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges 2.367 -1.385 -4.738 5.475 hybrid contribution 0.597 0.244 1.863 1.972 sum 2.964 -1.140 -2.875 4.284 Atomic orbital electron populations 1.23468 0.76599 1.04889 1.02116 1.87000 1.23334 1.31143 1.81959 1.23871 0.91713 0.81961 0.71708 1.90693 1.66923 1.37264 1.46932 1.20629 0.84836 0.88497 0.98213 1.45321 1.42966 1.02591 1.43243 1.18696 0.81775 0.84112 0.82133 1.90878 1.31814 1.86847 1.32001 1.22885 1.04055 0.90734 1.04352 1.22317 0.95110 0.91066 0.95499 1.19123 0.97995 0.92684 0.98023 1.21666 0.94608 0.99959 0.95004 1.21177 1.00704 0.91670 1.00401 1.20522 0.97582 0.95249 0.97787 1.25311 1.03439 0.94423 0.96455 1.86580 1.54813 1.44149 1.50245 0.94086 0.78264 0.78526 0.81596 1.21063 0.95996 0.99048 0.96546 1.21603 0.99422 0.91653 0.99465 1.24129 0.97733 1.00902 0.95913 1.23008 0.88616 0.85817 0.98355 1.86556 1.26098 1.73143 1.45236 1.21241 0.74307 0.89729 0.76639 1.93213 1.47785 1.88365 1.86733 1.93202 1.64708 1.96150 1.62140 1.93231 1.88446 1.73463 1.60735 1.23502 0.94489 0.95330 1.00354 0.92455 0.91840 0.86464 0.73208 0.82075 0.85753 0.82397 0.83433 0.85905 0.76459 1.20453 1.23741 0.85532 0.84634 0.86962 0.86945 0.73773 0.84530 0.85188 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.07 10.56 113.37 1.20 1.27 16 2 O -0.32 -2.28 6.34 -43.49 -0.28 -2.55 16 3 C 0.46 2.86 7.04 71.24 0.50 3.36 16 4 O -0.53 -5.53 15.81 21.98 0.35 -5.18 16 5 C 0.17 -0.16 1.11 3.38 0.00 -0.16 16 6 N -0.69 3.13 4.76 -428.09 -2.04 1.09 16 7 C 0.54 -0.08 7.07 86.38 0.61 0.53 16 8 O -0.54 -4.02 12.81 19.74 0.25 -3.77 16 9 C -0.20 0.97 9.41 23.62 0.22 1.20 16 10 C -0.02 0.05 9.46 23.84 0.23 0.27 16 11 C -0.08 0.21 5.87 -20.15 -0.12 0.10 16 12 C -0.09 0.54 9.41 22.57 0.21 0.75 16 13 C -0.12 0.62 8.65 22.23 0.19 0.82 16 14 C -0.11 0.26 5.40 -19.79 -0.11 0.16 16 15 C -0.09 0.21 2.82 71.24 0.20 0.41 16 16 O -0.55 -0.70 12.76 -148.98 -1.90 -2.60 16 17 Si 0.77 -3.15 29.77 68.60 2.04 -1.11 16 18 C -0.11 0.09 9.59 22.23 0.21 0.30 16 19 C -0.10 0.15 9.80 22.57 0.22 0.37 16 20 C -0.15 0.30 6.69 31.12 0.21 0.51 16 21 C 0.09 -0.42 1.36 -10.27 -0.01 -0.43 16 22 O -0.50 4.36 12.80 -148.98 -1.91 2.45 16 23 C 0.44 -0.44 2.85 71.98 0.21 -0.24 16 24 F -0.18 -0.43 15.76 44.97 0.71 0.28 16 25 F -0.18 0.14 16.65 44.97 0.75 0.89 16 26 F -0.18 -0.19 17.18 44.97 0.77 0.59 16 27 C -0.10 0.43 6.41 31.12 0.20 0.63 16 28 H 0.06 0.22 8.13 -2.39 -0.02 0.21 16 29 H 0.06 0.14 8.13 -2.39 -0.02 0.12 16 30 H 0.12 -0.10 8.14 -2.38 -0.02 -0.12 16 31 H 0.43 -4.44 8.46 -92.71 -0.78 -5.23 16 32 H 0.16 -1.89 6.07 -2.91 -0.02 -1.91 16 33 H 0.12 0.01 7.52 -2.91 -0.02 -0.01 16 34 H 0.16 -1.83 6.17 -2.91 -0.02 -1.85 16 35 H 0.15 -1.36 4.86 -2.91 -0.01 -1.37 16 36 H 0.12 -0.42 7.96 -2.39 -0.02 -0.44 16 37 H 0.39 -1.68 8.70 -74.05 -0.64 -2.33 16 38 H -0.28 0.28 7.11 99.48 0.71 0.99 16 39 H -0.31 -1.43 7.11 99.48 0.71 -0.72 16 40 H 0.13 -0.12 8.06 -2.91 -0.02 -0.14 16 41 H 0.14 -0.47 8.06 -2.91 -0.02 -0.49 16 42 H 0.11 0.00 7.09 -2.39 -0.02 -0.01 16 43 H 0.11 -0.30 8.14 -2.39 -0.02 -0.32 16 44 H 0.41 -5.58 8.42 -74.06 -0.62 -6.21 16 45 H 0.14 -1.24 8.11 -2.39 -0.02 -1.26 16 46 H 0.13 -0.29 7.13 -2.39 -0.02 -0.30 16 Total: 0.00 -23.47 401.49 2.02 -21.45 By element: Atomic # 1 Polarization: -20.48 SS G_CDS: -0.91 Total: -21.39 kcal Atomic # 6 Polarization: 5.67 SS G_CDS: 4.17 Total: 9.84 kcal Atomic # 7 Polarization: 3.13 SS G_CDS: -2.04 Total: 1.09 kcal Atomic # 8 Polarization: -8.17 SS G_CDS: -3.48 Total: -11.65 kcal Atomic # 9 Polarization: -0.47 SS G_CDS: 2.23 Total: 1.76 kcal Atomic # 14 Polarization: -3.15 SS G_CDS: 2.04 Total: -1.11 kcal Total: -23.47 2.02 -21.45 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_18364788_12360594.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -232.269 kcal (2) G-P(sol) polarization free energy of solvation -23.472 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -255.740 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.017 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -21.454 kcal (6) G-S(sol) free energy of system = (1) + (5) -253.723 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.49 seconds