Wall clock time and date at job start Sun Mar 7 2021 08:58:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45203 * 1 3 3 C 1.34231 * 117.00061 * 2 1 4 4 O 1.20823 * 119.99923 * 359.97438 * 3 2 1 5 5 C 1.50697 * 119.99945 * 179.97438 * 3 2 1 6 6 N 1.46507 * 112.85185 * 324.46710 * 5 3 2 7 7 C 1.34775 * 119.99740 * 294.08425 * 6 5 3 8 8 O 1.21284 * 120.00205 * 355.00948 * 7 6 5 9 9 C 1.50700 * 119.99954 * 175.00319 * 7 6 5 10 10 O 1.42896 * 109.47060 * 179.97438 * 9 7 6 11 11 C 1.35987 * 116.99696 * 179.97438 * 10 9 7 12 12 C 1.38674 * 119.99938 * 180.02562 * 11 10 9 13 13 C 1.50706 * 119.99911 * 359.97438 * 12 11 10 14 14 O 1.42899 * 109.47158 * 284.72580 * 13 12 11 15 15 Si 1.86304 * 109.46867 * 164.72412 * 13 12 11 16 16 C 1.38154 * 120.00168 * 179.72668 * 12 11 10 17 17 C 1.38675 * 119.99778 * 0.25481 * 16 12 11 18 18 O 1.35980 * 120.00229 * 179.97438 * 17 16 12 19 19 C 1.42902 * 117.00521 * 179.97438 * 18 17 16 20 20 C 1.38725 * 120.00162 * 359.97438 * 17 16 12 21 21 C 1.38107 * 119.99610 * 359.95968 * 20 17 16 22 22 C 1.53782 * 113.61697 * 193.27009 * 5 3 2 23 23 C 1.53781 * 87.08324 * 219.93645 * 22 5 3 24 24 O 1.42895 * 113.61377 * 270.88257 * 23 22 5 25 25 C 1.52997 * 113.61490 * 140.06567 * 23 22 5 26 26 F 1.39898 * 109.47369 * 59.99423 * 25 23 22 27 27 F 1.39900 * 109.47269 * 179.97438 * 25 23 22 28 28 F 1.39903 * 109.46912 * 299.99822 * 25 23 22 29 29 C 1.53781 * 113.69158 * 95.73423 * 5 3 2 30 30 H 1.09001 * 109.47207 * 180.02562 * 1 2 3 31 31 H 1.09002 * 109.46941 * 300.00186 * 1 2 3 32 32 H 1.09001 * 109.46901 * 60.00103 * 1 2 3 33 33 H 0.96996 * 119.99674 * 114.08471 * 6 5 3 34 34 H 1.08997 * 109.46868 * 59.99828 * 9 7 6 35 35 H 1.09005 * 109.46772 * 300.00173 * 9 7 6 36 36 H 1.09002 * 109.46448 * 44.72897 * 13 12 11 37 37 H 0.96697 * 113.99948 * 60.00336 * 14 13 12 38 38 H 1.48492 * 110.00123 * 300.00151 * 15 13 12 39 39 H 1.48504 * 109.99760 * 61.32193 * 15 13 12 40 40 H 1.07997 * 120.00065 * 180.22375 * 16 12 11 41 41 H 1.09003 * 109.47117 * 300.00809 * 19 18 17 42 42 H 1.09002 * 109.46862 * 60.00230 * 19 18 17 43 43 H 1.08993 * 109.47563 * 179.97438 * 19 18 17 44 44 H 1.08000 * 119.99980 * 179.97438 * 20 17 16 45 45 H 1.08001 * 119.99829 * 180.02562 * 21 20 17 46 46 H 1.09004 * 113.61303 * 334.48412 * 22 5 3 47 47 H 1.09002 * 113.61493 * 105.30035 * 22 5 3 48 48 H 0.96694 * 114.00630 * 180.02562 * 24 23 22 49 49 H 1.08994 * 113.61938 * 254.54392 * 29 5 3 50 50 H 1.09002 * 113.61356 * 25.44590 * 29 5 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4034 2.2093 -0.0005 5 6 3.5663 1.2748 0.0006 6 7 4.1917 0.2076 0.7857 7 6 4.0161 0.1621 2.1212 8 8 3.4169 1.0534 2.6847 9 6 4.5641 -0.9963 2.9142 10 8 4.2522 -0.8167 4.2971 11 6 4.6779 -1.7811 5.1562 12 6 4.4088 -1.6698 6.5120 13 6 3.6451 -0.4798 7.0334 14 8 4.5001 0.6651 7.0494 15 14 3.0488 -0.8338 8.7626 16 6 4.8363 -2.6524 7.3840 17 6 5.5392 -3.7473 6.9042 18 8 5.9605 -4.7142 7.7625 19 6 6.6784 -5.8139 7.1993 20 6 5.8125 -3.8563 5.5485 21 6 5.3839 -2.8747 4.6767 22 6 4.1097 2.6767 0.3239 23 6 5.1722 2.4290 -0.7599 24 8 6.3576 1.8017 -0.2667 25 6 5.4654 3.6579 -1.6229 26 9 5.9316 4.6974 -0.8110 27 9 6.4392 3.3376 -2.5749 28 9 4.2937 4.0624 -2.2715 29 6 4.1766 1.4474 -1.4004 30 1 -0.3634 -1.0277 0.0005 31 1 -0.3633 0.5139 0.8900 32 1 -0.3633 0.5138 -0.8900 33 1 4.7321 -0.4662 0.3443 34 1 5.6459 -1.0427 2.7891 35 1 4.1169 -1.9243 2.5579 36 1 2.7895 -0.2855 6.3867 37 1 4.8484 0.9080 6.1806 38 1 2.1587 -2.0224 8.7595 39 1 4.2075 -1.0693 9.6611 40 1 4.6236 -2.5675 8.4394 41 1 6.0487 -6.3237 6.4701 42 1 7.5790 -5.4462 6.7075 43 1 6.9556 -6.5104 7.9905 44 1 6.3602 -4.7088 5.1749 45 1 5.5963 -2.9597 3.6212 46 1 3.4158 3.4810 0.0795 47 1 4.5217 2.7641 1.3293 48 1 7.0297 1.6436 -0.9436 49 1 4.6439 0.5421 -1.7877 50 1 3.5010 1.9157 -2.1163 There are 80 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 80 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_18364788_4974302.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 08:58:31 Heat of formation + Delta-G solvation = -344.614386 kcal Electronic energy + Delta-G solvation = -45388.487572 eV Core-core repulsion = 38935.814893 eV Total energy + Delta-G solvation = -6452.672678 eV No. of doubly occupied orbitals = 80 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 436.136 amu Computer time = 1.85 seconds Orbital eigenvalues (eV) -51.30912 -48.84200 -48.78821 -42.76851 -41.85881 -40.90177 -40.37484 -39.65219 -38.15535 -37.73741 -37.00820 -36.58238 -34.45853 -32.91418 -31.23782 -30.21966 -29.08056 -28.46744 -28.02055 -27.58763 -26.63834 -25.63248 -24.03205 -22.65361 -22.49098 -22.10458 -20.87872 -20.25787 -19.66023 -19.62242 -19.50886 -19.09526 -18.87341 -18.51443 -18.14135 -18.06448 -17.63660 -17.52322 -17.34248 -17.22119 -16.73667 -16.37582 -16.13676 -16.01819 -15.71447 -15.67076 -15.62944 -15.55549 -15.32726 -15.21665 -15.12710 -14.97929 -14.94522 -14.85803 -14.68827 -14.50292 -14.17349 -14.16276 -13.96987 -13.74849 -13.64606 -13.60093 -13.48723 -13.23138 -13.10989 -12.77120 -12.58021 -12.40638 -12.35742 -12.22443 -11.95139 -11.88655 -11.57901 -11.53374 -11.30692 -11.13576 -11.07047 -10.50219 -10.23352 -8.93112 -4.87657 -0.06238 0.22013 0.74757 1.16222 1.22224 1.31407 1.35446 1.57640 1.66097 1.88716 2.21541 2.22674 2.34711 2.43245 2.43761 2.49011 2.66236 2.90578 3.19907 3.32902 3.35065 3.45531 3.57671 3.68441 3.83176 3.91642 3.99300 4.03663 4.04723 4.09911 4.13099 4.18219 4.21775 4.22083 4.26847 4.32371 4.34324 4.34693 4.46659 4.57320 4.58058 4.61941 4.68554 4.87367 5.01182 5.02867 5.08535 5.15349 5.30033 6.03444 6.25922 6.30182 6.34343 6.44667 6.53612 6.97016 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.350 6.350 3 C 0.467 3.533 4 O -0.522 6.522 5 C 0.172 3.828 6 N -0.672 5.672 7 C 0.520 3.480 8 O -0.554 6.554 9 C 0.040 3.960 10 O -0.310 6.310 11 C 0.099 3.901 12 C -0.119 4.119 13 C -0.084 4.084 14 O -0.545 6.545 15 Si 0.808 3.192 16 C -0.143 4.143 17 C 0.088 3.912 18 O -0.342 6.342 19 C 0.017 3.983 20 C -0.158 4.158 21 C -0.152 4.152 22 C -0.114 4.114 23 C 0.084 3.916 24 O -0.503 6.503 25 C 0.435 3.565 26 F -0.185 7.185 27 F -0.175 7.175 28 F -0.178 7.178 29 C -0.126 4.126 30 H 0.133 0.867 31 H 0.051 0.949 32 H 0.069 0.931 33 H 0.434 0.566 34 H 0.132 0.868 35 H 0.129 0.871 36 H 0.077 0.923 37 H 0.372 0.628 38 H -0.266 1.266 39 H -0.286 1.286 40 H 0.122 0.878 41 H 0.071 0.929 42 H 0.070 0.930 43 H 0.113 0.887 44 H 0.167 0.833 45 H 0.178 0.822 46 H 0.117 0.883 47 H 0.096 0.904 48 H 0.411 0.589 49 H 0.157 0.843 50 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.516 -9.364 -8.231 12.954 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.265 6.265 3 C 0.308 3.692 4 O -0.410 6.410 5 C 0.082 3.918 6 N -0.330 5.330 7 C 0.307 3.693 8 O -0.430 6.430 9 C -0.038 4.038 10 O -0.224 6.224 11 C 0.054 3.946 12 C -0.120 4.120 13 C -0.192 4.192 14 O -0.351 6.351 15 Si 0.710 3.290 16 C -0.162 4.162 17 C 0.043 3.957 18 O -0.257 6.257 19 C -0.077 4.077 20 C -0.177 4.177 21 C -0.170 4.170 22 C -0.152 4.152 23 C 0.040 3.960 24 O -0.313 6.313 25 C 0.381 3.619 26 F -0.167 7.167 27 F -0.156 7.156 28 F -0.159 7.159 29 C -0.164 4.164 30 H 0.152 0.848 31 H 0.069 0.931 32 H 0.088 0.912 33 H 0.275 0.725 34 H 0.150 0.850 35 H 0.147 0.853 36 H 0.096 0.904 37 H 0.220 0.780 38 H -0.192 1.192 39 H -0.214 1.214 40 H 0.140 0.860 41 H 0.089 0.911 42 H 0.088 0.912 43 H 0.131 0.869 44 H 0.184 0.816 45 H 0.195 0.805 46 H 0.135 0.865 47 H 0.115 0.885 48 H 0.265 0.735 49 H 0.175 0.825 50 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges 2.259 -8.848 -5.790 10.812 hybrid contribution 1.115 -0.318 -2.217 2.502 sum 3.374 -9.165 -8.006 12.629 Atomic orbital electron populations 1.23573 0.74788 1.05856 1.02402 1.86479 1.24796 1.32128 1.83146 1.23916 0.91846 0.81776 0.71623 1.90707 1.66969 1.37497 1.45816 1.20642 0.84228 0.90503 0.96389 1.45000 1.52909 1.29588 1.05533 1.20590 0.79095 0.87122 0.82501 1.90823 1.41976 1.39667 1.70569 1.22698 1.04017 0.97657 0.79393 1.86083 1.74947 1.44151 1.17197 1.18654 0.97462 0.89832 0.88663 1.19532 1.02932 0.98144 0.91371 1.25349 0.94347 0.84235 1.15255 1.86658 1.67116 1.45656 1.35649 0.92508 0.80422 0.82945 0.73172 1.20145 1.02380 0.94253 0.99373 1.18995 0.96885 0.89726 0.90099 1.86079 1.70904 1.32436 1.36281 1.23387 0.95869 0.86717 1.01733 1.21446 1.03427 1.01892 0.90905 1.21482 1.00022 0.93139 1.02406 1.23443 0.94995 0.96215 1.00594 1.23035 0.88782 0.89317 0.94869 1.86659 1.26204 1.79043 1.39407 1.21240 0.74504 0.86481 0.79712 1.93223 1.88875 1.61673 1.72886 1.93209 1.63655 1.92468 1.66257 1.93211 1.48349 1.91775 1.82595 1.24093 0.96864 1.02577 0.92820 0.84847 0.93062 0.91223 0.72461 0.85036 0.85318 0.90447 0.77964 1.19200 1.21362 0.86018 0.91068 0.91164 0.86854 0.81604 0.80493 0.86492 0.88541 0.73534 0.82486 0.85321 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 -0.03 10.56 113.37 1.20 1.16 16 2 O -0.35 -0.49 10.42 -51.43 -0.54 -1.03 16 3 C 0.47 1.99 6.59 71.23 0.47 2.46 16 4 O -0.52 -5.89 15.66 21.97 0.34 -5.55 16 5 C 0.17 -0.44 1.00 3.38 0.00 -0.44 16 6 N -0.67 4.90 4.53 -423.91 -1.92 2.98 16 7 C 0.52 -0.35 7.46 87.66 0.65 0.30 16 8 O -0.55 -5.88 15.04 15.99 0.24 -5.64 16 9 C 0.04 -0.27 5.22 71.24 0.37 0.11 16 10 O -0.31 -0.82 8.58 -74.37 -0.64 -1.46 16 11 C 0.10 0.31 6.62 22.49 0.15 0.46 16 12 C -0.12 -0.94 5.27 -19.78 -0.10 -1.04 16 13 C -0.08 -0.67 2.33 71.24 0.17 -0.51 16 14 O -0.54 -5.34 12.65 -148.98 -1.89 -7.23 16 15 Si 0.81 4.67 30.40 68.60 2.09 6.76 16 16 C -0.14 -1.34 8.59 22.35 0.19 -1.15 16 17 C 0.09 0.52 6.69 22.49 0.15 0.67 16 18 O -0.34 -1.98 10.50 -93.33 -0.98 -2.96 16 19 C 0.02 -0.07 9.81 113.37 1.11 1.04 16 20 C -0.16 0.18 9.03 22.36 0.20 0.38 16 21 C -0.15 0.46 9.03 22.35 0.20 0.66 16 22 C -0.11 -0.13 5.98 31.12 0.19 0.05 16 23 C 0.08 -0.47 1.36 -10.27 -0.01 -0.49 16 24 O -0.50 4.72 12.91 -148.98 -1.92 2.79 16 25 C 0.44 -0.70 2.85 71.98 0.21 -0.49 16 26 F -0.19 -0.65 17.18 44.97 0.77 0.12 16 27 F -0.17 0.59 16.65 44.97 0.75 1.34 16 28 F -0.18 -0.15 15.76 44.97 0.71 0.56 16 29 C -0.13 1.21 6.63 31.12 0.21 1.42 16 30 H 0.13 -1.00 8.14 -2.39 -0.02 -1.02 16 31 H 0.05 0.10 8.13 -2.39 -0.02 0.09 16 32 H 0.07 -0.13 8.13 -2.39 -0.02 -0.14 16 33 H 0.43 -7.05 8.66 -92.71 -0.80 -7.85 16 34 H 0.13 -1.77 7.65 -2.39 -0.02 -1.78 16 35 H 0.13 -1.66 7.67 -2.38 -0.02 -1.68 16 36 H 0.08 0.59 7.82 -2.39 -0.02 0.57 16 37 H 0.37 2.60 8.63 -74.06 -0.64 1.96 16 38 H -0.27 -2.17 7.11 99.48 0.71 -1.47 16 39 H -0.29 -3.24 6.81 99.48 0.68 -2.56 16 40 H 0.12 1.36 4.94 -2.91 -0.01 1.34 16 41 H 0.07 -0.51 7.66 -2.39 -0.02 -0.52 16 42 H 0.07 -0.48 7.66 -2.39 -0.02 -0.50 16 43 H 0.11 -0.74 8.14 -2.39 -0.02 -0.76 16 44 H 0.17 -1.27 6.29 -2.91 -0.02 -1.29 16 45 H 0.18 -2.15 6.29 -2.91 -0.02 -2.17 16 46 H 0.12 0.49 7.09 -2.38 -0.02 0.47 16 47 H 0.10 0.52 7.19 -2.39 -0.02 0.50 16 48 H 0.41 -6.96 8.42 -74.06 -0.62 -7.58 16 49 H 0.16 -2.83 8.09 -2.39 -0.02 -2.85 16 50 H 0.13 -1.12 7.10 -2.39 -0.02 -1.14 16 Total: 0.00 -34.51 432.94 1.39 -33.12 By element: Atomic # 1 Polarization: -27.42 SS G_CDS: -0.97 Total: -28.39 kcal Atomic # 6 Polarization: -0.76 SS G_CDS: 5.35 Total: 4.59 kcal Atomic # 7 Polarization: 4.90 SS G_CDS: -1.92 Total: 2.98 kcal Atomic # 8 Polarization: -15.69 SS G_CDS: -5.38 Total: -21.07 kcal Atomic # 9 Polarization: -0.21 SS G_CDS: 2.23 Total: 2.02 kcal Atomic # 14 Polarization: 4.67 SS G_CDS: 2.09 Total: 6.76 kcal Total: -34.51 1.39 -33.12 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_18364788_4974302.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -311.494 kcal (2) G-P(sol) polarization free energy of solvation -34.512 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -346.007 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.392 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.120 kcal (6) G-S(sol) free energy of system = (1) + (5) -344.614 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.85 seconds