Wall clock time and date at job start Sun Mar 7 2021 19:43:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.08993 * 109.46765 * 2 1 4 4 C 1.52999 * 109.47000 * 120.00585 * 2 1 3 5 5 C 1.53006 * 109.46626 * 180.02562 * 4 2 1 6 6 C 1.52997 * 109.47127 * 299.99539 * 5 4 2 7 7 H 1.08996 * 109.46952 * 300.00302 * 6 5 4 8 8 N 1.46496 * 109.46953 * 179.97438 * 6 5 4 9 9 C 1.34781 * 119.99775 * 154.99854 * 8 6 5 10 10 O 1.21699 * 120.00111 * 0.02562 * 9 8 6 11 11 C 1.46676 * 120.00119 * 180.02562 * 9 8 6 12 12 C 1.37874 * 126.23563 * 180.02562 * 11 9 8 13 13 C 1.39833 * 107.08523 * 179.97438 * 12 11 9 14 14 C 1.50700 * 126.06990 * 180.02562 * 13 12 11 15 15 O 1.42907 * 109.46823 * 65.00287 * 14 13 12 16 16 Si 1.86294 * 109.47430 * 185.00280 * 14 13 12 17 17 C 1.35455 * 107.86525 * 0.02562 * 13 12 11 18 18 N 1.35533 * 108.87331 * 359.76243 * 17 13 12 19 19 C 1.53002 * 109.46817 * 60.00361 * 6 5 4 20 20 C 1.52996 * 109.46972 * 299.99733 * 19 6 5 21 21 H 1.09000 * 109.46866 * 299.99600 * 1 2 3 22 22 H 1.09001 * 109.47372 * 60.00008 * 1 2 3 23 23 H 1.09004 * 109.47107 * 179.97438 * 1 2 3 24 24 H 1.08993 * 109.47839 * 60.00073 * 4 2 1 25 25 H 1.09000 * 109.47160 * 299.99635 * 4 2 1 26 26 H 1.09001 * 109.46801 * 59.99811 * 5 4 2 27 27 H 1.09001 * 109.46998 * 179.97438 * 5 4 2 28 28 H 0.97001 * 120.00575 * 335.00735 * 8 6 5 29 29 H 1.07992 * 126.45637 * 359.92784 * 12 11 9 30 30 H 1.08996 * 109.46975 * 305.01137 * 14 13 12 31 31 H 0.96702 * 113.99555 * 59.99984 * 15 14 13 32 32 H 1.48503 * 109.99891 * 180.02562 * 16 14 13 33 33 H 1.48504 * 110.00079 * 301.32121 * 16 14 13 34 34 H 1.07997 * 125.56116 * 179.97438 * 17 13 12 35 35 H 0.96992 * 125.68162 * 180.26664 * 18 17 13 36 36 H 1.08996 * 109.47407 * 60.00219 * 19 6 5 37 37 H 1.09000 * 109.46986 * 179.97438 * 19 6 5 38 38 H 1.09001 * 109.46993 * 180.02562 * 20 19 6 39 39 H 1.09000 * 109.47380 * 299.99696 * 20 19 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0400 -0.7214 1.2492 5 6 3.5701 -0.7208 1.2494 6 6 4.0806 -1.4416 0.0001 7 1 3.7176 -2.4693 -0.0001 8 7 5.5455 -1.4404 0.0001 9 6 6.2201 -2.3961 -0.6694 10 8 5.6122 -3.2596 -1.2743 11 6 7.6869 -2.3953 -0.6691 12 6 8.5025 -3.3055 -1.3073 13 6 9.8232 -2.9289 -1.0441 14 6 11.0614 -3.6316 -1.5380 15 8 11.1275 -3.5356 -2.9623 16 14 12.5691 -2.8319 -0.7910 17 6 9.7920 -1.8202 -0.2665 18 7 8.4998 -1.4829 -0.0354 19 6 3.5705 -0.7202 -1.2490 20 6 2.0405 -0.7208 -1.2493 21 1 -0.3633 0.5138 0.8900 22 1 -0.3634 0.5138 -0.8900 23 1 -0.3633 -1.0277 -0.0005 24 1 1.6768 -1.7490 1.2492 25 1 1.6767 -0.2076 2.1392 26 1 3.9330 0.3071 1.2497 27 1 3.9335 -1.2343 2.1396 28 1 6.0301 -0.7520 0.4820 29 1 8.1818 -4.1504 -1.8985 30 1 11.0244 -4.6811 -1.2460 31 1 11.1630 -2.6280 -3.2940 32 1 13.7970 -3.5156 -1.2708 33 1 12.6141 -1.3930 -1.1556 34 1 10.6559 -1.2896 0.1056 35 1 8.1981 -0.7256 0.4901 36 1 3.9335 0.3075 -1.2488 37 1 3.9345 -1.2335 -2.1391 38 1 1.6772 -0.2073 -2.1394 39 1 1.6776 -1.7486 -1.2496 There are 49 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 49 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_22_4279154_10543058.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 19:43:42 Heat of formation + Delta-G solvation = -41.753078 kcal Electronic energy + Delta-G solvation = -20070.520126 eV Core-core repulsion = 16979.317375 eV Total energy + Delta-G solvation = -3091.202750 eV No. of doubly occupied orbitals = 49 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 265.146 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -42.49179 -40.76473 -39.12813 -37.73616 -35.74164 -32.89120 -32.07135 -31.85297 -30.55135 -27.29536 -26.25226 -24.09231 -23.78067 -22.12522 -21.29312 -20.98277 -20.63416 -19.86820 -17.70144 -17.20669 -17.01507 -16.46378 -15.97453 -15.80199 -15.47316 -15.33060 -15.27437 -14.85891 -14.62530 -14.48317 -14.14446 -13.82537 -13.71816 -13.40012 -13.29201 -13.22778 -12.63224 -12.40054 -12.18639 -12.01872 -11.80489 -11.75848 -11.40074 -11.20953 -11.00745 -10.46752 -10.15356 -9.97139 -9.31299 -4.95205 0.42032 1.32743 1.53903 1.59474 1.92111 2.01642 2.05708 2.39687 3.51576 3.55059 3.62258 3.72995 3.85599 3.89411 3.99500 4.03330 4.11201 4.30958 4.34231 4.39790 4.42787 4.47469 4.67483 4.69926 4.74164 4.84741 4.89254 4.91672 4.96940 5.06032 5.07169 5.10676 5.17612 5.24075 5.31539 5.40571 5.46859 5.60224 5.80011 6.20175 6.43596 6.55146 7.15442 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.095 4.095 3 H 0.070 0.930 4 C -0.111 4.111 5 C -0.126 4.126 6 C 0.147 3.853 7 H 0.092 0.908 8 N -0.730 5.730 9 C 0.590 3.410 10 O -0.523 6.523 11 C -0.058 4.058 12 C -0.076 4.076 13 C -0.208 4.208 14 C -0.041 4.041 15 O -0.530 6.530 16 Si 0.684 3.316 17 C 0.034 3.966 18 N -0.535 5.535 19 C -0.129 4.129 20 C -0.113 4.113 21 H 0.055 0.945 22 H 0.055 0.945 23 H 0.056 0.944 24 H 0.067 0.933 25 H 0.069 0.931 26 H 0.067 0.933 27 H 0.070 0.930 28 H 0.393 0.607 29 H 0.150 0.850 30 H 0.115 0.885 31 H 0.374 0.626 32 H -0.259 1.259 33 H -0.261 1.261 34 H 0.175 0.825 35 H 0.418 0.582 36 H 0.063 0.937 37 H 0.069 0.931 38 H 0.066 0.934 39 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.299 5.034 5.427 7.408 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.113 4.113 3 H 0.088 0.912 4 C -0.149 4.149 5 C -0.164 4.164 6 C 0.043 3.957 7 H 0.110 0.890 8 N -0.380 5.380 9 C 0.378 3.622 10 O -0.398 6.398 11 C -0.170 4.170 12 C -0.102 4.102 13 C -0.215 4.215 14 C -0.151 4.151 15 O -0.336 6.336 16 Si 0.585 3.415 17 C -0.102 4.102 18 N -0.131 5.131 19 C -0.168 4.168 20 C -0.151 4.151 21 H 0.074 0.926 22 H 0.074 0.926 23 H 0.075 0.925 24 H 0.086 0.914 25 H 0.087 0.913 26 H 0.086 0.914 27 H 0.088 0.912 28 H 0.226 0.774 29 H 0.168 0.832 30 H 0.133 0.867 31 H 0.221 0.779 32 H -0.183 1.183 33 H -0.186 1.186 34 H 0.192 0.808 35 H 0.255 0.745 36 H 0.081 0.919 37 H 0.088 0.912 38 H 0.085 0.915 39 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges 0.468 4.283 4.960 6.571 hybrid contribution -0.188 1.268 -0.558 1.398 sum 0.281 5.551 4.402 7.090 Atomic orbital electron populations 1.21837 0.94921 1.02061 1.01853 1.21184 0.95791 0.99602 0.94718 0.91165 1.21549 0.93881 1.01411 0.98084 1.21816 0.96881 1.00757 0.96989 1.21051 0.78184 1.01302 0.95194 0.89023 1.45984 1.07686 1.30431 1.53941 1.17058 0.84865 0.81422 0.78872 1.90879 1.68395 1.37258 1.43316 1.20451 0.90379 0.97561 1.08647 1.21231 0.90877 0.98830 0.99270 1.19836 0.95783 0.99601 1.06302 1.24336 1.01341 1.05353 0.84094 1.86614 1.95454 1.32187 1.19372 0.95388 0.76615 0.78736 0.90753 1.21893 0.86560 0.99013 1.02765 1.41926 1.06063 1.24019 1.41127 1.21924 0.96112 1.00620 0.98149 1.21565 0.94459 1.01225 0.97813 0.92588 0.92557 0.92519 0.91419 0.91264 0.91412 0.91177 0.77416 0.83205 0.86688 0.77887 1.18322 1.18577 0.80766 0.74470 0.91874 0.91246 0.91496 0.91510 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 0.18 9.19 37.16 0.34 0.52 16 2 C -0.09 0.13 2.72 -90.62 -0.25 -0.12 16 3 H 0.07 -0.09 8.14 -51.93 -0.42 -0.52 16 4 C -0.11 0.19 5.20 -26.73 -0.14 0.06 16 5 C -0.13 0.28 5.39 -26.73 -0.14 0.13 16 6 C 0.15 -0.04 2.45 -67.93 -0.17 -0.21 16 7 H 0.09 0.17 7.58 -51.93 -0.39 -0.22 16 8 N -0.73 0.55 5.07 -55.12 -0.28 0.27 16 9 C 0.59 1.52 7.75 -12.85 -0.10 1.42 16 10 O -0.52 -3.51 16.55 5.19 0.09 -3.43 16 11 C -0.06 -0.07 7.06 -81.98 -0.58 -0.65 16 12 C -0.08 -0.18 10.59 -39.12 -0.41 -0.60 16 13 C -0.21 -0.06 5.43 -105.02 -0.57 -0.63 16 14 C -0.04 0.00 3.02 36.01 0.11 0.11 16 15 O -0.53 -1.07 12.88 -35.23 -0.45 -1.52 16 16 Si 0.68 -1.07 30.60 -169.99 -5.20 -6.27 16 17 C 0.03 -0.07 10.45 -16.91 -0.18 -0.25 16 18 N -0.54 1.25 5.99 -9.39 -0.06 1.19 16 19 C -0.13 -0.01 5.49 -26.73 -0.15 -0.15 16 20 C -0.11 0.05 5.20 -26.73 -0.14 -0.09 16 21 H 0.06 -0.08 8.14 -51.93 -0.42 -0.50 16 22 H 0.06 -0.06 8.14 -51.93 -0.42 -0.48 16 23 H 0.06 -0.06 8.14 -51.93 -0.42 -0.48 16 24 H 0.07 -0.08 8.14 -51.93 -0.42 -0.50 16 25 H 0.07 -0.15 8.14 -51.93 -0.42 -0.57 16 26 H 0.07 -0.20 8.14 -51.93 -0.42 -0.63 16 27 H 0.07 -0.16 8.14 -51.93 -0.42 -0.59 16 28 H 0.39 -1.50 7.73 -40.82 -0.32 -1.81 16 29 H 0.15 0.52 8.06 -52.49 -0.42 0.09 16 30 H 0.12 -0.02 7.96 -51.93 -0.41 -0.43 16 31 H 0.37 -0.35 8.70 45.56 0.40 0.05 16 32 H -0.26 -0.57 7.11 56.52 0.40 -0.17 16 33 H -0.26 0.03 7.11 56.52 0.40 0.43 16 34 H 0.18 -0.85 6.21 -52.49 -0.33 -1.17 16 35 H 0.42 -2.38 8.19 -40.82 -0.33 -2.72 16 36 H 0.06 -0.03 8.14 -51.93 -0.42 -0.46 16 37 H 0.07 0.16 8.14 -51.93 -0.42 -0.27 16 38 H 0.07 -0.03 8.14 -51.93 -0.42 -0.45 16 39 H 0.07 0.01 8.14 -51.93 -0.42 -0.41 16 LS Contribution 317.39 15.07 4.78 4.78 Total: 0.00 -7.68 317.39 -9.57 -17.26 By element: Atomic # 1 Polarization: -5.74 SS G_CDS: -6.08 Total: -11.82 kcal Atomic # 6 Polarization: 1.91 SS G_CDS: -2.37 Total: -0.46 kcal Atomic # 7 Polarization: 1.80 SS G_CDS: -0.34 Total: 1.47 kcal Atomic # 8 Polarization: -4.58 SS G_CDS: -0.37 Total: -4.95 kcal Atomic # 14 Polarization: -1.07 SS G_CDS: -5.20 Total: -6.27 kcal Total LS contribution 4.78 Total: 4.78 kcal Total: -7.68 -9.57 -17.26 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_4279154_10543058.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -24.496 kcal (2) G-P(sol) polarization free energy of solvation -7.683 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.180 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.573 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -17.257 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.753 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds