Wall clock time and date at job start Sun Mar 7 2021 19:43:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09001 * 109.47150 * 2 1 4 4 C 1.53004 * 109.47263 * 120.00086 * 2 1 3 5 5 C 1.52998 * 109.47263 * 180.02562 * 4 2 1 6 6 C 1.53006 * 109.46901 * 300.00002 * 5 4 2 7 7 H 1.09001 * 109.47146 * 299.99914 * 6 5 4 8 8 N 1.46495 * 109.46848 * 179.97438 * 6 5 4 9 9 C 1.34779 * 120.00098 * 85.00346 * 8 6 5 10 10 O 1.21723 * 120.00025 * 359.97438 * 9 8 6 11 11 C 1.46566 * 120.00404 * 180.02562 * 9 8 6 12 12 C 1.40851 * 126.58282 * 179.97438 * 11 9 8 13 13 C 1.40095 * 132.86614 * 359.93505 * 12 11 9 14 14 C 1.36448 * 119.25360 * 180.02562 * 13 12 11 15 15 C 1.50699 * 120.29223 * 180.02562 * 14 13 12 16 16 O 1.42903 * 109.47152 * 240.00444 * 15 14 13 17 17 Si 1.86293 * 109.47431 * 120.00336 * 15 14 13 18 18 C 1.40153 * 119.41076 * 0.28163 * 14 13 12 19 19 C 1.35187 * 120.31645 * 359.41224 * 18 14 13 20 20 N 1.36236 * 120.70904 * 0.61120 * 19 18 14 21 21 N 1.40015 * 132.01523 * 179.67190 * 20 19 18 22 22 C 1.30747 * 109.60622 * 180.02562 * 21 20 19 23 23 C 1.52999 * 109.46973 * 60.00214 * 6 5 4 24 24 C 1.52998 * 109.47132 * 299.99644 * 23 6 5 25 25 H 1.09001 * 109.47150 * 180.02562 * 1 2 3 26 26 H 1.09004 * 109.47160 * 300.00120 * 1 2 3 27 27 H 1.09002 * 109.47415 * 59.99908 * 1 2 3 28 28 H 1.08998 * 109.46704 * 300.00365 * 4 2 1 29 29 H 1.09001 * 109.47107 * 59.99888 * 4 2 1 30 30 H 1.08995 * 109.46790 * 180.02562 * 5 4 2 31 31 H 1.09001 * 109.47150 * 59.99914 * 5 4 2 32 32 H 0.97004 * 120.00570 * 264.99993 * 8 6 5 33 33 H 1.08000 * 120.37109 * 0.05369 * 13 12 11 34 34 H 1.09008 * 109.47393 * 359.97438 * 15 14 13 35 35 H 0.96700 * 114.00311 * 180.02562 * 16 15 14 36 36 H 1.48501 * 109.99918 * 298.67862 * 17 15 14 37 37 H 1.48506 * 109.99973 * 59.99460 * 17 15 14 38 38 H 1.07997 * 119.84131 * 179.70215 * 18 14 13 39 39 H 1.08003 * 119.64345 * 180.26876 * 19 18 14 40 40 H 1.07995 * 125.62703 * 180.02562 * 22 21 20 41 41 H 1.09001 * 109.47429 * 59.99873 * 23 6 5 42 42 H 1.09004 * 109.46674 * 179.97438 * 23 6 5 43 43 H 1.09002 * 109.47415 * 180.02562 * 24 23 6 44 44 H 1.09001 * 109.47150 * 300.00400 * 24 23 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7213 1.2492 5 6 3.5700 -0.7207 1.2496 6 6 4.0805 -1.4416 0.0003 7 1 3.7175 -2.4694 0.0000 8 7 5.5455 -1.4405 0.0003 9 6 6.2201 -2.3962 0.6697 10 8 5.6121 -3.2600 1.2746 11 6 7.6857 -2.3949 0.6702 12 6 8.5258 -3.3205 1.3194 13 6 8.2700 -4.4481 2.1104 14 6 9.3187 -5.1625 2.6120 15 6 9.0705 -6.3797 3.4651 16 8 9.6556 -6.1853 4.7543 17 14 9.8354 -7.8726 2.6548 18 6 10.6288 -4.7511 2.3312 19 6 10.8520 -3.6632 1.5605 20 7 9.8116 -2.9431 1.0553 21 7 9.7675 -1.7972 0.2519 22 6 8.5227 -1.4698 0.0226 23 6 3.5705 -0.7203 -1.2489 24 6 2.0405 -0.7208 -1.2492 25 1 -0.3633 -1.0277 0.0005 26 1 -0.3634 0.5139 0.8900 27 1 -0.3634 0.5138 -0.8900 28 1 1.6766 -0.2075 2.1392 29 1 1.6767 -1.7490 1.2492 30 1 3.9333 -1.2349 2.1393 31 1 3.9330 0.3071 1.2498 32 1 6.0301 -0.7521 -0.4815 33 1 7.2542 -4.7488 2.3203 34 1 7.9969 -6.5347 3.5735 35 1 9.5348 -6.9312 5.3577 36 1 9.2128 -8.1045 1.3266 37 1 11.2991 -7.6734 2.5018 38 1 11.4639 -5.3086 2.7287 39 1 11.8659 -3.3583 1.3474 40 1 8.1921 -0.6282 -0.5679 41 1 3.9335 0.3075 -1.2487 42 1 3.9346 -1.2336 -2.1389 43 1 1.6771 -0.2074 -2.1394 44 1 1.6776 -1.7487 -1.2495 There are 58 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 58 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_4279154_11618758.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 19:43:49 Heat of formation + Delta-G solvation = 22.153747 kcal Electronic energy + Delta-G solvation = -26179.589641 eV Core-core repulsion = 22485.516147 eV Total energy + Delta-G solvation = -3694.073494 eV No. of doubly occupied orbitals = 58 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 316.157 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -43.43260 -40.93913 -39.40836 -39.03662 -37.29115 -35.66569 -34.38795 -32.35505 -32.23808 -31.75457 -30.25926 -27.57951 -26.67987 -25.02555 -23.90639 -23.63579 -23.06710 -22.02232 -21.37733 -20.66838 -19.24789 -18.41006 -18.11280 -17.68931 -17.12762 -17.03858 -16.77844 -16.09826 -15.92497 -15.59715 -15.49949 -15.19993 -15.17820 -14.96244 -14.61320 -14.34385 -14.18220 -13.96898 -13.62031 -13.43502 -13.21289 -13.14946 -13.10974 -12.61670 -12.52155 -12.21891 -12.09429 -12.00059 -11.92344 -11.74592 -11.65120 -11.29042 -11.12427 -10.93115 -10.86263 -10.25298 -10.09508 -8.92313 -5.02679 -0.70665 -0.26535 0.89086 0.93100 1.21176 1.62956 1.89775 1.95751 2.17070 2.39385 2.93604 3.08195 3.39218 3.58638 3.65716 3.68650 3.74053 3.78468 3.87250 3.93677 4.10892 4.11795 4.19393 4.24921 4.31102 4.42706 4.45554 4.46414 4.54271 4.57971 4.64478 4.78332 4.81753 4.96495 4.98493 5.00387 5.03247 5.10219 5.13372 5.17546 5.19065 5.24871 5.35775 5.41471 5.51055 5.52676 5.57884 6.16955 6.56625 6.84717 7.24747 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.091 4.091 3 H 0.077 0.923 4 C -0.110 4.110 5 C -0.124 4.124 6 C 0.150 3.850 7 H 0.063 0.937 8 N -0.711 5.711 9 C 0.599 3.401 10 O -0.590 6.590 11 C -0.338 4.338 12 C 0.147 3.853 13 C -0.121 4.121 14 C -0.032 4.032 15 C -0.084 4.084 16 O -0.556 6.556 17 Si 0.805 3.195 18 C -0.151 4.151 19 C 0.110 3.890 20 N -0.275 5.275 21 N -0.337 5.337 22 C 0.132 3.868 23 C -0.119 4.119 24 C -0.110 4.110 25 H 0.051 0.949 26 H 0.054 0.946 27 H 0.061 0.939 28 H 0.066 0.934 29 H 0.054 0.946 30 H 0.041 0.959 31 H 0.074 0.926 32 H 0.413 0.587 33 H 0.154 0.846 34 H 0.091 0.909 35 H 0.409 0.591 36 H -0.306 1.306 37 H -0.272 1.272 38 H 0.184 0.816 39 H 0.206 0.794 40 H 0.239 0.761 41 H 0.085 0.915 42 H 0.074 0.926 43 H 0.079 0.921 44 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.899 -1.385 0.151 1.658 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.109 4.109 3 H 0.095 0.905 4 C -0.148 4.148 5 C -0.162 4.162 6 C 0.046 3.954 7 H 0.081 0.919 8 N -0.362 5.362 9 C 0.388 3.612 10 O -0.473 6.473 11 C -0.352 4.352 12 C 0.026 3.974 13 C -0.140 4.140 14 C -0.037 4.037 15 C -0.192 4.192 16 O -0.367 6.367 17 Si 0.708 3.292 18 C -0.172 4.172 19 C -0.016 4.016 20 N -0.039 5.039 21 N -0.157 5.157 22 C -0.048 4.048 23 C -0.157 4.157 24 C -0.149 4.149 25 H 0.070 0.930 26 H 0.073 0.927 27 H 0.080 0.920 28 H 0.084 0.916 29 H 0.073 0.927 30 H 0.060 0.940 31 H 0.093 0.907 32 H 0.249 0.751 33 H 0.171 0.829 34 H 0.109 0.891 35 H 0.261 0.739 36 H -0.234 1.234 37 H -0.198 1.198 38 H 0.201 0.799 39 H 0.223 0.777 40 H 0.255 0.745 41 H 0.104 0.896 42 H 0.093 0.907 43 H 0.098 0.902 44 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges 2.305 -1.272 -0.664 2.715 hybrid contribution -0.904 0.583 -0.029 1.076 sum 1.402 -0.689 -0.694 1.709 Atomic orbital electron populations 1.21833 0.94945 1.01799 1.02058 1.21157 0.95716 0.99784 0.94248 0.90466 1.21543 0.94095 1.00686 0.98508 1.21856 0.96375 1.00818 0.97183 1.20961 0.78458 0.99917 0.96061 0.91856 1.45670 1.07227 1.30108 1.53165 1.16992 0.85385 0.80895 0.77907 1.90745 1.70524 1.39635 1.46359 1.19756 0.93727 1.04383 1.17363 1.19557 0.85279 0.95875 0.96660 1.20695 1.01456 0.93151 0.98723 1.19874 0.93011 0.94870 0.95991 1.24909 1.03568 1.01668 0.89021 1.86423 1.79458 1.48030 1.22793 0.94233 0.77043 0.78430 0.79529 1.21163 0.98472 0.97596 0.99956 1.22195 0.93215 0.91397 0.94784 1.46305 1.05489 1.19399 1.32691 1.77566 1.21780 1.00077 1.16299 1.24663 0.88293 0.97635 0.94235 1.21771 0.96467 1.01512 0.95914 1.21549 0.94136 1.00931 0.98234 0.93016 0.92660 0.92036 0.91554 0.92680 0.94028 0.90746 0.75059 0.82874 0.89103 0.73869 1.23377 1.19765 0.79920 0.77675 0.74536 0.89641 0.90713 0.90249 0.92362 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 0.23 9.19 71.98 0.66 0.89 16 2 C -0.09 0.14 2.72 -10.79 -0.03 0.11 16 3 H 0.08 -0.19 8.14 -2.39 -0.02 -0.21 16 4 C -0.11 -0.14 5.20 30.59 0.16 0.02 16 5 C -0.12 -0.37 5.49 30.60 0.17 -0.20 16 6 C 0.15 0.37 2.45 44.99 0.11 0.48 16 7 H 0.06 0.50 7.58 -2.39 -0.02 0.48 16 8 N -0.71 -1.62 5.07 -446.58 -2.26 -3.88 16 9 C 0.60 5.97 7.75 86.41 0.67 6.64 16 10 O -0.59 -10.25 15.37 -4.42 -0.07 -10.32 16 11 C -0.34 -2.98 6.17 -19.90 -0.12 -3.10 16 12 C 0.15 1.58 6.76 39.49 0.27 1.84 16 13 C -0.12 -1.09 9.35 22.30 0.21 -0.88 16 14 C -0.03 -0.14 4.53 -19.82 -0.09 -0.23 16 15 C -0.08 0.14 2.80 71.24 0.20 0.34 16 16 O -0.56 1.57 12.76 -148.98 -1.90 -0.33 16 17 Si 0.81 -3.56 31.98 68.60 2.19 -1.37 16 18 C -0.15 -0.26 8.67 22.03 0.19 -0.07 16 19 C 0.11 0.28 11.17 83.31 0.93 1.21 16 20 N -0.27 -2.29 3.86 -187.28 -0.72 -3.01 16 21 N -0.34 -2.67 12.57 -56.61 -0.71 -3.38 16 22 C 0.13 0.48 11.44 85.42 0.98 1.45 16 23 C -0.12 0.35 5.39 30.59 0.16 0.52 16 24 C -0.11 0.26 5.20 30.59 0.16 0.42 16 25 H 0.05 -0.03 8.14 -2.39 -0.02 -0.05 16 26 H 0.05 -0.07 8.14 -2.38 -0.02 -0.09 16 27 H 0.06 -0.15 8.14 -2.39 -0.02 -0.17 16 28 H 0.07 0.07 8.14 -2.39 -0.02 0.05 16 29 H 0.05 0.18 8.14 -2.39 -0.02 0.16 16 30 H 0.04 0.36 8.14 -2.39 -0.02 0.34 16 31 H 0.07 0.05 8.14 -2.39 -0.02 0.03 16 32 H 0.41 -1.89 7.52 -92.71 -0.70 -2.58 16 33 H 0.15 1.58 7.01 -2.91 -0.02 1.56 16 34 H 0.09 -0.33 7.71 -2.38 -0.02 -0.34 16 35 H 0.41 -5.48 8.74 -74.06 -0.65 -6.12 16 36 H -0.31 -1.22 7.11 99.48 0.71 -0.52 16 37 H -0.27 0.15 7.08 99.48 0.70 0.86 16 38 H 0.18 -0.59 7.55 -2.91 -0.02 -0.61 16 39 H 0.21 -0.89 8.06 -2.91 -0.02 -0.92 16 40 H 0.24 -1.61 7.46 -2.91 -0.02 -1.63 16 41 H 0.09 -0.50 8.14 -2.39 -0.02 -0.51 16 42 H 0.07 -0.25 8.14 -2.38 -0.02 -0.27 16 43 H 0.08 -0.32 8.14 -2.39 -0.02 -0.34 16 44 H 0.06 -0.03 8.14 -2.39 -0.02 -0.05 16 Total: 0.00 -24.65 359.42 0.86 -23.79 By element: Atomic # 1 Polarization: -10.66 SS G_CDS: -0.29 Total: -10.95 kcal Atomic # 6 Polarization: 4.82 SS G_CDS: 4.63 Total: 9.45 kcal Atomic # 7 Polarization: -6.58 SS G_CDS: -3.70 Total: -10.27 kcal Atomic # 8 Polarization: -8.68 SS G_CDS: -1.97 Total: -10.65 kcal Atomic # 14 Polarization: -3.56 SS G_CDS: 2.19 Total: -1.37 kcal Total: -24.65 0.86 -23.79 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_4279154_11618758.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.943 kcal (2) G-P(sol) polarization free energy of solvation -24.654 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 21.290 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.864 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -23.790 kcal (6) G-S(sol) free energy of system = (1) + (5) 22.154 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds