Wall clock time and date at job start Sun Mar 7 2021 19:43:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.35715 * 117.00039 * 2 1 4 4 C 1.38687 * 119.86352 * 359.97438 * 3 2 1 5 5 C 1.38434 * 120.03563 * 180.02562 * 4 3 2 6 6 O 1.35653 * 120.12347 * 179.97438 * 5 4 3 7 7 C 1.42900 * 117.00159 * 359.97438 * 6 5 4 8 8 C 1.40303 * 119.75964 * 359.97438 * 5 4 3 9 9 C 1.47297 * 120.13762 * 179.97438 * 8 5 4 10 10 O 1.21622 * 119.99862 * 0.02562 * 9 8 5 11 11 N 1.34772 * 120.00085 * 179.97438 * 9 8 5 12 12 C 1.46500 * 120.00367 * 180.02562 * 11 9 8 13 13 H 1.09002 * 109.46808 * 35.00133 * 12 11 9 14 14 C 1.53001 * 109.47226 * 155.00159 * 12 11 9 15 15 C 1.53001 * 109.46791 * 179.97438 * 14 12 11 16 16 C 1.52995 * 109.47549 * 300.00290 * 15 14 12 17 17 H 1.09002 * 109.46848 * 299.99925 * 16 15 14 18 18 C 1.53001 * 109.47549 * 180.02562 * 16 15 14 19 19 C 1.53001 * 109.47311 * 60.00028 * 16 15 14 20 20 C 1.53003 * 109.47050 * 275.00458 * 12 11 9 21 21 C 1.39857 * 119.72557 * 359.75683 * 8 5 4 22 22 C 1.37549 * 119.96589 * 0.51454 * 21 8 5 23 23 C 1.50697 * 119.87877 * 179.73155 * 22 21 8 24 24 O 1.42905 * 109.46996 * 254.72709 * 23 22 21 25 25 Si 1.86301 * 109.47403 * 14.72972 * 23 22 21 26 26 H 1.09004 * 109.46842 * 299.99410 * 1 2 3 27 27 H 1.08992 * 109.47546 * 59.99858 * 1 2 3 28 28 H 1.09006 * 109.46935 * 180.02562 * 1 2 3 29 29 H 1.08004 * 119.98075 * 0.02562 * 4 3 2 30 30 H 1.09005 * 109.46566 * 59.99965 * 7 6 5 31 31 H 1.08995 * 109.47594 * 179.97438 * 7 6 5 32 32 H 1.08995 * 109.47284 * 300.00388 * 7 6 5 33 33 H 0.97005 * 119.99859 * 0.02562 * 11 9 8 34 34 H 1.08997 * 109.47083 * 300.00281 * 14 12 11 35 35 H 1.08995 * 109.46851 * 60.00281 * 14 12 11 36 36 H 1.09002 * 109.46984 * 60.00132 * 15 14 12 37 37 H 1.09004 * 109.46794 * 179.97438 * 15 14 12 38 38 H 1.09004 * 109.46794 * 59.99419 * 18 16 15 39 39 H 1.08997 * 109.47577 * 179.97438 * 18 16 15 40 40 H 1.08995 * 109.47153 * 300.00225 * 18 16 15 41 41 H 1.09001 * 109.47350 * 59.99599 * 19 16 15 42 42 H 1.08998 * 109.47340 * 180.02562 * 19 16 15 43 43 H 1.08995 * 109.47279 * 299.99873 * 20 12 11 44 44 H 1.09000 * 109.47246 * 60.00010 * 20 12 11 45 45 H 1.08003 * 120.01948 * 180.26900 * 21 8 5 46 46 H 1.09001 * 109.46613 * 134.73120 * 23 22 21 47 47 H 0.96696 * 114.00036 * 60.00342 * 24 23 22 48 48 H 1.48497 * 109.99842 * 179.97438 * 25 23 22 49 49 H 1.48498 * 109.99736 * 301.31722 * 25 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0452 1.2092 0.0000 4 6 1.2871 2.3706 -0.0005 5 6 1.9118 3.6059 -0.0011 6 8 1.1721 4.7429 -0.0021 7 6 -0.2490 4.5924 -0.0032 8 6 3.3130 3.6776 -0.0005 9 6 3.9865 4.9876 -0.0017 10 8 3.3277 6.0100 -0.0026 11 7 5.3326 5.0534 -0.0006 12 6 6.0024 6.3562 -0.0012 13 1 5.4194 7.0647 0.5872 14 6 7.3978 6.2126 0.6097 15 6 8.0976 7.5732 0.6085 16 6 8.2200 8.0825 -0.8290 17 1 8.8030 7.3737 -1.4172 18 6 8.9204 9.4429 -0.8303 19 6 6.8247 8.2262 -1.4399 20 6 6.1249 6.8661 -1.4385 21 6 4.0677 2.5002 0.0057 22 6 3.4352 1.2787 0.0006 23 6 4.2504 0.0112 0.0012 24 8 4.2148 -0.5786 -1.3000 25 14 6.0132 0.4068 0.4557 26 1 -0.3633 0.5138 0.8901 27 1 -0.3634 0.5138 -0.8899 28 1 -0.3633 -1.0277 0.0005 29 1 0.2087 2.3111 -0.0005 30 1 -0.5568 4.0435 0.8868 31 1 -0.7186 5.5760 -0.0035 32 1 -0.5555 4.0428 -0.8931 33 1 5.8580 4.2379 0.0005 34 1 7.3105 5.8493 1.6336 35 1 7.9808 5.5041 0.0213 36 1 7.5147 8.2821 1.1966 37 1 9.0915 7.4709 1.0441 38 1 9.9145 9.3401 -0.3952 39 1 9.0080 9.8055 -1.8544 40 1 8.3379 10.1519 -0.2420 41 1 6.2417 8.9349 -0.8517 42 1 6.9119 8.5886 -2.4641 43 1 6.7078 6.1576 -2.0270 44 1 5.1308 6.9685 -1.8737 45 1 5.1466 2.5499 0.0105 46 1 3.8356 -0.6870 0.7281 47 1 4.5692 -0.0118 -1.9986 48 1 6.8274 -0.8352 0.4605 49 1 6.5799 1.3825 -0.5097 There are 63 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 63 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_4279154_12297780.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 19:43:55 Heat of formation + Delta-G solvation = -120.931901 kcal Electronic energy + Delta-G solvation = -30394.216047 eV Core-core repulsion = 26288.339994 eV Total energy + Delta-G solvation = -4105.876053 eV No. of doubly occupied orbitals = 63 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 336.182 amu Computer time = 1.10 seconds Orbital eigenvalues (eV) -42.12381 -40.88490 -40.05915 -39.15503 -38.49673 -37.07287 -35.64938 -32.68829 -32.25397 -31.73523 -31.17894 -28.99293 -28.23293 -26.86460 -26.11031 -24.54140 -23.70155 -22.96114 -22.02449 -21.48981 -20.73203 -20.04744 -18.83729 -18.23625 -18.01419 -17.26704 -17.15851 -16.63925 -16.57300 -16.31453 -16.06514 -15.88582 -15.77506 -15.50688 -15.29039 -15.17323 -15.15023 -14.73590 -14.22389 -14.19783 -14.05040 -13.60074 -13.53396 -13.23620 -13.18077 -13.08832 -12.69624 -12.56474 -12.53373 -12.49020 -12.21367 -12.07322 -11.89922 -11.80549 -11.68156 -11.62071 -11.26282 -11.09507 -10.82432 -10.54759 -10.08617 -9.92572 -9.20052 -4.90627 -0.26361 0.07035 1.30895 1.55847 1.73610 1.97939 2.10775 2.11664 2.18103 2.60315 3.42793 3.46475 3.56730 3.70024 3.73601 3.76344 3.79489 3.95442 4.08722 4.14008 4.17242 4.21627 4.23514 4.26184 4.27307 4.29351 4.43250 4.47063 4.55148 4.57535 4.60252 4.62940 4.66783 4.75081 4.79409 4.83290 4.90228 4.98424 5.01725 5.03834 5.12761 5.17090 5.21142 5.27013 5.29428 5.37202 5.43645 5.53236 5.59498 6.03023 6.28475 6.55011 6.55877 7.26243 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.012 3.988 2 O -0.312 6.312 3 C 0.215 3.785 4 C -0.311 4.311 5 C 0.217 3.783 6 O -0.305 6.305 7 C 0.010 3.990 8 C -0.227 4.227 9 C 0.563 3.437 10 O -0.564 6.564 11 N -0.717 5.717 12 C 0.148 3.852 13 H 0.065 0.935 14 C -0.121 4.121 15 C -0.110 4.110 16 C -0.091 4.091 17 H 0.076 0.924 18 C -0.149 4.149 19 C -0.110 4.110 20 C -0.125 4.125 21 C 0.000 4.000 22 C -0.197 4.197 23 C -0.071 4.071 24 O -0.546 6.546 25 Si 0.761 3.239 26 H 0.072 0.928 27 H 0.066 0.934 28 H 0.119 0.881 29 H 0.163 0.837 30 H 0.073 0.927 31 H 0.112 0.888 32 H 0.070 0.930 33 H 0.409 0.591 34 H 0.081 0.919 35 H 0.084 0.916 36 H 0.058 0.942 37 H 0.080 0.920 38 H 0.061 0.939 39 H 0.053 0.947 40 H 0.051 0.949 41 H 0.054 0.946 42 H 0.064 0.936 43 H 0.073 0.927 44 H 0.040 0.960 45 H 0.162 0.838 46 H 0.114 0.886 47 H 0.384 0.616 48 H -0.299 1.299 49 H -0.255 1.255 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.768 -1.962 2.046 2.937 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.082 4.082 2 O -0.223 6.223 3 C 0.167 3.833 4 C -0.330 4.330 5 C 0.168 3.832 6 O -0.216 6.216 7 C -0.084 4.084 8 C -0.231 4.231 9 C 0.352 3.648 10 O -0.444 6.444 11 N -0.369 5.369 12 C 0.044 3.956 13 H 0.084 0.916 14 C -0.159 4.159 15 C -0.148 4.148 16 C -0.110 4.110 17 H 0.095 0.905 18 C -0.206 4.206 19 C -0.148 4.148 20 C -0.163 4.163 21 C -0.018 4.018 22 C -0.198 4.198 23 C -0.179 4.179 24 O -0.354 6.354 25 Si 0.663 3.337 26 H 0.090 0.910 27 H 0.084 0.916 28 H 0.137 0.863 29 H 0.180 0.820 30 H 0.091 0.909 31 H 0.131 0.869 32 H 0.088 0.912 33 H 0.246 0.754 34 H 0.099 0.901 35 H 0.102 0.898 36 H 0.077 0.923 37 H 0.099 0.901 38 H 0.080 0.920 39 H 0.072 0.928 40 H 0.070 0.930 41 H 0.073 0.927 42 H 0.083 0.917 43 H 0.091 0.909 44 H 0.059 0.941 45 H 0.179 0.821 46 H 0.132 0.868 47 H 0.232 0.768 48 H -0.227 1.227 49 H -0.180 1.180 Dipole moment (debyes) X Y Z Total from point charges 0.969 -1.718 2.131 2.904 hybrid contribution -1.027 -0.314 -1.342 1.719 sum -0.057 -2.032 0.788 2.181 Atomic orbital electron populations 1.23466 0.76147 1.05998 1.02599 1.86145 1.23580 1.26119 1.86471 1.18925 0.91725 0.84096 0.88571 1.21414 1.02092 0.90649 1.18842 1.18989 0.90287 0.85514 0.88398 1.86366 1.20714 1.28439 1.86034 1.23469 0.76701 1.05572 1.02651 1.19162 0.90899 0.93764 1.19319 1.18077 0.82560 0.88405 0.75776 1.90814 1.65637 1.37023 1.50943 1.45903 1.05516 1.10074 1.75427 1.20983 0.93939 0.84192 0.96477 0.91647 1.21801 0.93163 0.98921 1.01990 1.21548 1.01165 0.95794 0.96313 1.21161 0.95439 0.97712 0.96645 0.90537 1.21831 1.00524 0.96483 1.01784 1.21530 0.96036 0.96110 1.01140 1.21854 0.99940 0.97915 0.96632 1.20995 1.00098 0.89052 0.91662 1.19497 0.91291 0.96054 1.12987 1.25104 1.10779 0.94195 0.87859 1.86614 1.85402 1.46110 1.17257 0.94292 0.71259 0.79326 0.88779 0.90965 0.91557 0.86282 0.81983 0.90861 0.86941 0.91186 0.75392 0.90061 0.89787 0.92275 0.90121 0.91993 0.92777 0.93012 0.92689 0.91680 0.90861 0.94073 0.82117 0.86835 0.76755 1.22703 1.18003 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 -0.06 9.80 113.37 1.11 1.05 16 2 O -0.31 -0.76 9.80 -90.36 -0.89 -1.64 16 3 C 0.22 0.59 6.67 22.60 0.15 0.74 16 4 C -0.31 -0.65 8.01 22.42 0.18 -0.47 16 5 C 0.22 1.46 6.69 22.82 0.15 1.61 16 6 O -0.30 -2.77 8.56 -68.72 -0.59 -3.36 16 7 C 0.01 -0.01 9.81 113.37 1.11 1.11 16 8 C -0.23 -1.31 5.89 -20.00 -0.12 -1.43 16 9 C 0.56 5.05 7.72 86.63 0.67 5.72 16 10 O -0.56 -9.96 14.81 16.86 0.25 -9.71 16 11 N -0.72 -1.32 5.03 -445.92 -2.24 -3.56 16 12 C 0.15 0.30 2.46 44.99 0.11 0.41 16 13 H 0.07 0.49 7.58 -2.39 -0.02 0.47 16 14 C -0.12 0.45 5.39 30.59 0.16 0.61 16 15 C -0.11 0.33 5.20 30.59 0.16 0.49 16 16 C -0.09 0.16 2.72 -10.79 -0.03 0.14 16 17 H 0.08 -0.20 8.14 -2.39 -0.02 -0.22 16 18 C -0.15 0.26 9.19 71.98 0.66 0.92 16 19 C -0.11 -0.14 5.20 30.58 0.16 0.02 16 20 C -0.12 -0.36 5.49 30.58 0.17 -0.19 16 21 C 0.00 0.00 8.14 22.50 0.18 0.18 16 22 C -0.20 -0.20 5.27 -19.80 -0.10 -0.30 16 23 C -0.07 0.00 2.37 71.23 0.17 0.17 16 24 O -0.55 -1.76 12.88 -148.98 -1.92 -3.68 16 25 Si 0.76 -3.18 30.23 68.60 2.07 -1.11 16 26 H 0.07 -0.53 7.65 -2.39 -0.02 -0.55 16 27 H 0.07 -0.42 7.65 -2.39 -0.02 -0.43 16 28 H 0.12 -0.90 8.14 -2.38 -0.02 -0.92 16 29 H 0.16 -0.46 4.50 -2.91 -0.01 -0.48 16 30 H 0.07 -0.31 7.66 -2.38 -0.02 -0.32 16 31 H 0.11 -0.28 8.14 -2.39 -0.02 -0.29 16 32 H 0.07 -0.26 7.66 -2.39 -0.02 -0.28 16 33 H 0.41 -1.82 6.62 -92.70 -0.61 -2.44 16 34 H 0.08 -0.41 8.14 -2.39 -0.02 -0.43 16 35 H 0.08 -0.53 8.14 -2.39 -0.02 -0.55 16 36 H 0.06 -0.07 8.14 -2.39 -0.02 -0.09 16 37 H 0.08 -0.39 8.14 -2.39 -0.02 -0.41 16 38 H 0.06 -0.17 8.14 -2.39 -0.02 -0.19 16 39 H 0.05 -0.07 8.14 -2.39 -0.02 -0.09 16 40 H 0.05 -0.04 8.14 -2.39 -0.02 -0.06 16 41 H 0.05 0.18 8.14 -2.39 -0.02 0.16 16 42 H 0.06 0.07 8.14 -2.39 -0.02 0.05 16 43 H 0.07 0.05 8.14 -2.39 -0.02 0.03 16 44 H 0.04 0.35 8.14 -2.39 -0.02 0.33 16 45 H 0.16 -0.94 3.16 -2.91 -0.01 -0.95 16 46 H 0.11 0.06 7.82 -2.39 -0.02 0.04 16 47 H 0.38 -1.19 8.70 -74.06 -0.64 -1.84 16 48 H -0.30 -1.15 7.11 99.48 0.71 -0.44 16 49 H -0.25 1.15 6.69 99.48 0.67 1.82 16 Total: 0.00 -21.67 384.10 1.30 -20.37 By element: Atomic # 1 Polarization: -7.80 SS G_CDS: -0.29 Total: -8.09 kcal Atomic # 6 Polarization: 5.88 SS G_CDS: 4.90 Total: 10.78 kcal Atomic # 7 Polarization: -1.32 SS G_CDS: -2.24 Total: -3.56 kcal Atomic # 8 Polarization: -15.25 SS G_CDS: -3.14 Total: -18.39 kcal Atomic # 14 Polarization: -3.18 SS G_CDS: 2.07 Total: -1.11 kcal Total: -21.67 1.30 -20.37 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_4279154_12297780.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -100.565 kcal (2) G-P(sol) polarization free energy of solvation -21.666 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -122.231 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.299 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -20.367 kcal (6) G-S(sol) free energy of system = (1) + (5) -120.932 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.10 seconds