Wall clock time and date at job start Sun Mar 7 2021 19:44:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09002 * 109.47097 * 2 1 4 4 C 1.53002 * 109.47454 * 120.00120 * 2 1 3 5 5 C 1.53001 * 109.46963 * 180.02562 * 4 2 1 6 6 C 1.53000 * 109.46886 * 299.99499 * 5 4 2 7 7 H 1.09002 * 109.47398 * 300.00496 * 6 5 4 8 8 N 1.46499 * 109.46840 * 180.02562 * 6 5 4 9 9 C 1.34781 * 119.99874 * 85.00543 * 8 6 5 10 10 O 1.21590 * 120.00231 * 359.97438 * 9 8 6 11 11 C 1.47579 * 120.00232 * 179.97438 * 9 8 6 12 12 C 1.40205 * 119.82974 * 359.97438 * 11 9 8 13 13 C 1.36233 * 120.37964 * 179.97438 * 12 11 9 14 14 C 1.39869 * 119.95942 * 0.02562 * 13 12 11 15 15 C 1.46260 * 133.84710 * 180.02562 * 14 13 12 16 16 C 1.50703 * 126.47826 * 359.95822 * 15 14 13 17 17 O 1.42896 * 109.47322 * 74.99932 * 16 15 14 18 18 Si 1.86302 * 109.46681 * 194.99933 * 16 15 14 19 19 C 1.34453 * 107.03670 * 179.97438 * 15 14 13 20 20 N 1.36559 * 109.98781 * 0.02562 * 19 15 14 21 21 C 1.37829 * 109.86070 * 0.02562 * 20 19 15 22 22 C 1.38649 * 133.38064 * 180.35669 * 21 20 19 23 23 C 1.53002 * 109.47233 * 60.00670 * 6 5 4 24 24 C 1.52997 * 109.46978 * 240.00199 * 2 1 3 25 25 H 1.09002 * 109.46838 * 180.02562 * 1 2 3 26 26 H 1.08996 * 109.46698 * 299.99981 * 1 2 3 27 27 H 1.09001 * 109.47142 * 60.00035 * 1 2 3 28 28 H 1.09000 * 109.46497 * 300.00109 * 4 2 1 29 29 H 1.09002 * 109.47067 * 59.99861 * 4 2 1 30 30 H 1.09001 * 109.46652 * 179.97438 * 5 4 2 31 31 H 1.08992 * 109.47514 * 59.99933 * 5 4 2 32 32 H 0.97002 * 120.00410 * 264.99761 * 8 6 5 33 33 H 1.08002 * 119.81078 * 359.97438 * 12 11 9 34 34 H 1.07998 * 120.01969 * 180.02562 * 13 12 11 35 35 H 1.09000 * 109.46962 * 314.99303 * 16 15 14 36 36 H 0.96697 * 113.99919 * 179.97438 * 17 16 15 37 37 H 1.48499 * 110.00049 * 299.99414 * 18 16 15 38 38 H 1.48501 * 110.00121 * 61.32100 * 18 16 15 39 39 H 1.08006 * 125.00675 * 180.02562 * 19 15 14 40 40 H 0.96996 * 125.07099 * 179.97438 * 20 19 15 41 41 H 1.07997 * 120.16384 * 359.90078 * 22 21 20 42 42 H 1.09002 * 109.47075 * 59.99068 * 23 6 5 43 43 H 1.08996 * 109.47407 * 180.02562 * 23 6 5 44 44 H 1.09001 * 109.47375 * 59.99908 * 24 2 1 45 45 H 1.09002 * 109.47497 * 299.99550 * 24 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0401 -0.7213 1.2492 5 6 3.5701 -0.7206 1.2494 6 6 4.0805 -1.4416 0.0002 7 1 3.7175 -2.4694 0.0000 8 7 5.5455 -1.4415 0.0007 9 6 6.2192 -2.3979 0.6701 10 8 5.6111 -3.2604 1.2740 11 6 7.6950 -2.3982 0.6702 12 6 8.3927 -1.4023 -0.0277 13 6 9.7550 -1.3916 -0.0347 14 6 10.4648 -2.3786 0.6569 15 6 11.8878 -2.6547 0.8514 16 6 13.0394 -1.8584 0.2938 17 8 13.1778 -0.6415 1.0301 18 14 14.6085 -2.8525 0.4366 19 6 11.9743 -3.7535 1.6214 20 7 10.7236 -4.2033 1.9350 21 6 9.7743 -3.3859 1.3603 22 6 8.3878 -3.3863 1.3662 23 6 3.5705 -0.7204 -1.2491 24 6 2.0400 -0.7212 -1.2493 25 1 -0.3633 -1.0277 0.0005 26 1 -0.3632 0.5138 0.8900 27 1 -0.3633 0.5138 -0.8900 28 1 1.6767 -0.2074 2.1392 29 1 1.6768 -1.7490 1.2492 30 1 3.9335 -1.2341 2.1396 31 1 3.9331 0.3071 1.2496 32 1 6.0307 -0.7533 -0.4808 33 1 7.8470 -0.6392 -0.5629 34 1 10.2865 -0.6214 -0.5739 35 1 12.8487 -1.6291 -0.7546 36 1 13.9018 -0.0776 0.7253 37 1 14.8798 -3.1715 1.8613 38 1 14.4892 -4.1058 -0.3508 39 1 12.8969 -4.2128 1.9444 40 1 10.5319 -4.9824 2.4801 41 1 7.8476 -4.1496 1.9066 42 1 3.9334 0.3075 -1.2488 43 1 3.9337 -1.2342 -2.1391 44 1 1.6766 -0.2074 -2.1392 45 1 1.6767 -1.7489 -1.2493 There are 58 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 58 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_4279154_12335838.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 19:44:04 Heat of formation + Delta-G solvation = -22.244909 kcal Electronic energy + Delta-G solvation = -25706.995130 eV Core-core repulsion = 22076.422276 eV Total energy + Delta-G solvation = -3630.572853 eV No. of doubly occupied orbitals = 58 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 315.162 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -42.57952 -41.22572 -39.46254 -37.84983 -37.48203 -35.79799 -33.44751 -32.44728 -31.77032 -30.86217 -30.47201 -27.07704 -26.40484 -24.64687 -23.81719 -23.65940 -22.21221 -21.52014 -20.80457 -20.59649 -19.31420 -18.43175 -18.23259 -17.64694 -17.13659 -16.36408 -16.13557 -15.76761 -15.47638 -15.39169 -15.20481 -15.19297 -15.08420 -14.86538 -14.81100 -14.65980 -14.24079 -13.85478 -13.64181 -13.30404 -13.22141 -13.13640 -12.76703 -12.58793 -12.52910 -12.16557 -12.11016 -11.93588 -11.93384 -11.69457 -11.32288 -11.16231 -11.00813 -10.88784 -10.16772 -10.15010 -9.47911 -8.92293 -4.91604 -0.42578 0.29421 1.21676 1.37490 1.71134 1.79435 1.84656 2.01414 2.16117 2.79276 3.46308 3.55443 3.63178 3.66515 3.70943 3.73007 3.91642 4.01266 4.05381 4.09778 4.17294 4.20238 4.29223 4.37566 4.42009 4.44144 4.49525 4.52671 4.56392 4.72305 4.77071 4.79590 4.89753 4.95261 4.98901 5.08198 5.12101 5.14847 5.17674 5.22632 5.31952 5.33612 5.38017 5.40517 5.47024 5.50307 5.56015 5.87384 6.34481 6.44999 7.03387 7.11113 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.091 4.091 3 H 0.078 0.922 4 C -0.110 4.110 5 C -0.125 4.125 6 C 0.146 3.854 7 H 0.064 0.936 8 N -0.707 5.707 9 C 0.561 3.439 10 O -0.583 6.583 11 C -0.131 4.131 12 C -0.105 4.105 13 C -0.075 4.075 14 C -0.083 4.083 15 C -0.187 4.187 16 C -0.044 4.044 17 O -0.567 6.567 18 Si 0.781 3.219 19 C 0.065 3.935 20 N -0.580 5.580 21 C 0.067 3.933 22 C -0.071 4.071 23 C -0.119 4.119 24 C -0.111 4.111 25 H 0.050 0.950 26 H 0.054 0.946 27 H 0.061 0.939 28 H 0.066 0.934 29 H 0.053 0.947 30 H 0.041 0.959 31 H 0.076 0.924 32 H 0.415 0.585 33 H 0.159 0.841 34 H 0.151 0.849 35 H 0.086 0.914 36 H 0.400 0.600 37 H -0.290 1.290 38 H -0.292 1.292 39 H 0.186 0.814 40 H 0.433 0.567 41 H 0.127 0.873 42 H 0.086 0.914 43 H 0.076 0.924 44 H 0.080 0.920 45 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.406 4.664 -4.748 7.982 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.109 4.109 3 H 0.097 0.903 4 C -0.149 4.149 5 C -0.163 4.163 6 C 0.042 3.958 7 H 0.082 0.918 8 N -0.358 5.358 9 C 0.350 3.650 10 O -0.464 6.464 11 C -0.135 4.135 12 C -0.125 4.125 13 C -0.093 4.093 14 C -0.088 4.088 15 C -0.195 4.195 16 C -0.154 4.154 17 O -0.377 6.377 18 Si 0.686 3.314 19 C -0.063 4.063 20 N -0.183 5.183 21 C -0.040 4.040 22 C -0.092 4.092 23 C -0.157 4.157 24 C -0.149 4.149 25 H 0.069 0.931 26 H 0.073 0.927 27 H 0.080 0.920 28 H 0.085 0.915 29 H 0.072 0.928 30 H 0.060 0.940 31 H 0.095 0.905 32 H 0.253 0.747 33 H 0.177 0.823 34 H 0.169 0.831 35 H 0.103 0.897 36 H 0.251 0.749 37 H -0.217 1.217 38 H -0.219 1.219 39 H 0.202 0.798 40 H 0.273 0.727 41 H 0.145 0.855 42 H 0.105 0.895 43 H 0.094 0.906 44 H 0.099 0.901 45 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges 3.796 2.965 -3.690 6.068 hybrid contribution -0.538 -0.627 0.536 0.985 sum 3.258 2.338 -3.154 5.102 Atomic orbital electron populations 1.21834 0.94958 1.01765 1.02088 1.21161 0.95716 0.99834 0.94203 0.90341 1.21546 0.94041 1.00671 0.98607 1.21862 0.96463 1.00945 0.97063 1.21034 0.78436 1.00051 0.96322 0.91819 1.45882 1.07453 1.29952 1.52511 1.18363 0.87433 0.81018 0.78208 1.90763 1.70776 1.39353 1.45526 1.19526 0.91968 0.98715 1.03327 1.20970 0.94116 0.98066 0.99334 1.20465 0.93500 0.97322 0.98051 1.19563 0.92795 0.96371 1.00091 1.20105 0.92612 0.99540 1.07195 1.24177 1.03092 0.91164 0.96988 1.86483 1.58479 1.32333 1.60404 0.94029 0.80182 0.79105 0.78110 1.22003 0.88590 0.97138 0.98615 1.41726 1.03921 1.27093 1.45572 1.18199 0.90575 0.94688 1.00550 1.20111 0.89955 0.99344 0.99790 1.21786 0.96500 1.01568 0.95805 1.21563 0.94097 1.00925 0.98276 0.93088 0.92674 0.91967 0.91506 0.92771 0.94019 0.90522 0.74662 0.82312 0.83141 0.89655 0.74895 1.21746 1.21897 0.79764 0.72748 0.85486 0.89501 0.90558 0.90120 0.92400 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 0.25 9.19 71.98 0.66 0.91 16 2 C -0.09 0.16 2.72 -10.79 -0.03 0.14 16 3 H 0.08 -0.22 8.14 -2.39 -0.02 -0.24 16 4 C -0.11 -0.13 5.20 30.60 0.16 0.03 16 5 C -0.12 -0.34 5.49 30.59 0.17 -0.17 16 6 C 0.15 0.31 2.45 44.99 0.11 0.42 16 7 H 0.06 0.49 7.58 -2.39 -0.02 0.47 16 8 N -0.71 -1.22 5.03 -445.64 -2.24 -3.46 16 9 C 0.56 5.03 7.73 86.71 0.67 5.70 16 10 O -0.58 -10.09 15.97 -4.00 -0.06 -10.16 16 11 C -0.13 -0.89 5.87 -20.08 -0.12 -1.01 16 12 C -0.11 -0.14 9.46 22.28 0.21 0.07 16 13 C -0.08 -0.22 10.03 22.20 0.22 0.00 16 14 C -0.08 -0.58 6.35 -20.14 -0.13 -0.71 16 15 C -0.19 -0.96 5.61 -18.64 -0.10 -1.06 16 16 C -0.04 0.04 3.05 71.24 0.22 0.26 16 17 O -0.57 0.23 12.86 -148.98 -1.92 -1.69 16 18 Si 0.78 -3.12 30.79 68.60 2.11 -1.01 16 19 C 0.07 0.22 10.43 83.09 0.87 1.09 16 20 N -0.58 -1.91 6.07 -187.70 -1.14 -3.05 16 21 C 0.07 0.50 7.26 38.96 0.28 0.78 16 22 C -0.07 -0.61 9.61 22.63 0.22 -0.39 16 23 C -0.12 0.40 5.39 30.61 0.17 0.57 16 24 C -0.11 0.30 5.21 30.61 0.16 0.46 16 25 H 0.05 -0.03 8.14 -2.39 -0.02 -0.05 16 26 H 0.05 -0.08 8.14 -2.39 -0.02 -0.10 16 27 H 0.06 -0.17 8.14 -2.39 -0.02 -0.19 16 28 H 0.07 0.06 8.14 -2.39 -0.02 0.05 16 29 H 0.05 0.18 8.14 -2.39 -0.02 0.16 16 30 H 0.04 0.34 8.14 -2.39 -0.02 0.32 16 31 H 0.08 0.02 8.14 -2.39 -0.02 0.00 16 32 H 0.41 -2.00 6.59 -92.71 -0.61 -2.61 16 33 H 0.16 -0.99 6.36 -2.91 -0.02 -1.01 16 34 H 0.15 -0.25 8.06 -2.91 -0.02 -0.27 16 35 H 0.09 -0.36 7.96 -2.39 -0.02 -0.38 16 36 H 0.40 -4.49 8.74 -74.06 -0.65 -5.13 16 37 H -0.29 -0.56 7.04 99.48 0.70 0.14 16 38 H -0.29 -0.54 7.11 99.48 0.71 0.17 16 39 H 0.19 -0.17 6.30 -2.91 -0.02 -0.19 16 40 H 0.43 -1.04 8.96 -92.71 -0.83 -1.87 16 41 H 0.13 1.19 7.62 -2.91 -0.02 1.16 16 42 H 0.09 -0.55 8.14 -2.39 -0.02 -0.57 16 43 H 0.08 -0.31 8.14 -2.39 -0.02 -0.32 16 44 H 0.08 -0.36 8.14 -2.39 -0.02 -0.38 16 45 H 0.06 -0.04 8.14 -2.39 -0.02 -0.06 16 Total: 0.00 -22.65 361.79 -0.55 -23.20 By element: Atomic # 1 Polarization: -9.88 SS G_CDS: -1.04 Total: -10.91 kcal Atomic # 6 Polarization: 3.35 SS G_CDS: 3.73 Total: 7.08 kcal Atomic # 7 Polarization: -3.13 SS G_CDS: -3.38 Total: -6.51 kcal Atomic # 8 Polarization: -9.87 SS G_CDS: -1.98 Total: -11.85 kcal Atomic # 14 Polarization: -3.12 SS G_CDS: 2.11 Total: -1.01 kcal Total: -22.65 -0.55 -23.20 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_4279154_12335838.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.952 kcal (2) G-P(sol) polarization free energy of solvation -22.648 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.696 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.549 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -23.197 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.245 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds