Wall clock time and date at job start Sun Mar 7 2021 19:44:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.34847 * 125.90066 * 2 1 4 4 C 1.40946 * 107.46816 * 180.02562 * 3 2 1 5 5 C 1.50699 * 126.26573 * 180.02562 * 4 3 2 6 6 O 1.42907 * 109.46603 * 255.02630 * 5 4 3 7 7 Si 1.86298 * 109.47032 * 15.01933 * 5 4 3 8 8 C 1.34854 * 107.46562 * 0.26163 * 4 3 2 9 9 C 1.50697 * 125.89805 * 179.70158 * 8 4 3 10 10 N 1.36564 * 125.89844 * 180.02562 * 2 1 3 11 11 C 1.40232 * 125.67154 * 359.94253 * 10 2 1 12 12 C 1.38545 * 119.99567 * 294.75181 * 11 10 2 13 13 C 1.39499 * 119.78502 * 179.76846 * 12 11 10 14 14 C 1.47861 * 120.11266 * 180.22632 * 13 12 11 15 15 O 1.21558 * 120.00025 * 0.29871 * 14 13 12 16 16 N 1.34773 * 120.00109 * 180.29617 * 14 13 12 17 17 C 1.46506 * 120.00106 * 180.02562 * 16 14 13 18 18 H 1.08990 * 109.46986 * 34.99394 * 17 16 14 19 19 C 1.52997 * 109.47160 * 155.00044 * 17 16 14 20 20 C 1.52998 * 109.47020 * 179.97438 * 19 17 16 21 21 C 1.53000 * 109.47289 * 300.00088 * 20 19 17 22 22 H 1.08996 * 109.46700 * 299.99649 * 21 20 19 23 23 C 1.53005 * 109.47007 * 179.97438 * 21 20 19 24 24 C 1.52997 * 109.47161 * 59.99999 * 21 20 19 25 25 C 1.52996 * 109.46976 * 299.99782 * 24 21 20 26 26 C 1.39572 * 119.77720 * 0.52131 * 13 12 11 27 27 C 1.38023 * 119.97928 * 359.73088 * 26 13 12 28 28 C 1.38215 * 120.21861 * 359.97438 * 27 26 13 29 29 H 1.09006 * 109.46951 * 89.98187 * 1 2 3 30 30 H 1.09004 * 109.46801 * 209.97307 * 1 2 3 31 31 H 1.08996 * 109.47261 * 329.97541 * 1 2 3 32 32 H 1.07997 * 126.26329 * 0.05542 * 3 2 1 33 33 H 1.08996 * 109.47117 * 135.02543 * 5 4 3 34 34 H 0.96697 * 114.00527 * 59.99993 * 6 5 4 35 35 H 1.48506 * 109.99834 * 58.68765 * 7 5 4 36 36 H 1.48502 * 110.00011 * 180.02562 * 7 5 4 37 37 H 1.09001 * 109.46987 * 90.02322 * 9 8 4 38 38 H 1.08999 * 109.46960 * 210.02550 * 9 8 4 39 39 H 1.09001 * 109.46946 * 330.02334 * 9 8 4 40 40 H 1.08004 * 120.10705 * 0.02562 * 12 11 10 41 41 H 0.97003 * 120.00119 * 0.02562 * 16 14 13 42 42 H 1.08999 * 109.46998 * 299.99682 * 19 17 16 43 43 H 1.09002 * 109.47043 * 59.99769 * 19 17 16 44 44 H 1.09002 * 109.46907 * 60.00291 * 20 19 17 45 45 H 1.08999 * 109.47195 * 179.97438 * 20 19 17 46 46 H 1.09001 * 109.46594 * 60.00333 * 23 21 20 47 47 H 1.08996 * 109.46734 * 179.97438 * 23 21 20 48 48 H 1.09002 * 109.47362 * 300.00309 * 23 21 20 49 49 H 1.09004 * 109.47557 * 59.99849 * 24 21 20 50 50 H 1.08999 * 109.46998 * 179.97438 * 24 21 20 51 51 H 1.08994 * 109.47509 * 300.00102 * 25 24 21 52 52 H 1.09000 * 109.47241 * 179.97438 * 25 24 21 53 53 H 1.07999 * 120.01333 * 179.74875 * 26 13 12 54 54 H 1.08008 * 119.88781 * 180.02562 * 27 26 13 55 55 H 1.08000 * 119.88499 * 180.02562 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2977 1.0923 0.0000 4 6 3.6349 0.6467 -0.0006 5 6 4.8648 1.5175 -0.0003 6 8 5.4543 1.5095 -1.3020 7 14 4.3913 3.2606 0.4562 8 6 3.6121 -0.7017 -0.0068 9 6 4.8178 -1.6057 -0.0160 10 7 2.3078 -1.1062 -0.0005 11 6 1.8644 -2.4366 0.0001 12 6 1.1697 -2.9348 1.0903 13 6 0.7265 -4.2575 1.0842 14 6 -0.0199 -4.7951 2.2418 15 8 -0.2530 -4.0827 3.1987 16 7 -0.4418 -6.0751 2.2360 17 6 -1.1819 -6.6076 3.3828 18 1 -1.8135 -5.8250 3.8028 19 6 -2.0552 -7.7783 2.9271 20 6 -2.8276 -8.3348 4.1248 21 6 -1.8399 -8.8191 5.1882 22 1 -1.2083 -9.6016 4.7679 23 6 -2.6124 -9.3751 6.3863 24 6 -0.9666 -7.6484 5.6439 25 6 -0.1942 -7.0920 4.4462 26 6 0.9954 -5.0735 -0.0158 27 6 1.6928 -4.5690 -1.0947 28 6 2.1264 -3.2566 -1.0907 29 1 -0.3633 0.0003 -1.0277 30 1 -0.3633 -0.8903 0.5134 31 1 -0.3633 0.8897 0.5142 32 1 1.9670 2.1204 0.0008 33 1 5.5815 1.1337 0.7256 34 1 4.8716 1.8390 -1.9998 35 1 3.7481 3.2782 1.7946 36 1 5.5955 4.1296 0.4595 37 1 5.1124 -1.8288 1.0094 38 1 4.5725 -2.5331 -0.5336 39 1 5.6404 -1.1091 -0.5306 40 1 0.9683 -2.2999 1.9405 41 1 -0.2555 -6.6438 1.4726 42 1 -2.7586 -7.4334 2.1692 43 1 -1.4234 -8.5610 2.5071 44 1 -3.4594 -7.5523 4.5451 45 1 -3.4501 -9.1686 3.8001 46 1 -3.2348 -10.2090 6.0619 47 1 -1.9087 -9.7204 7.1436 48 1 -3.2439 -8.5922 6.8065 49 1 -1.5983 -6.8658 6.0643 50 1 -0.2633 -7.9933 6.4019 51 1 0.4375 -7.8744 4.0259 52 1 0.4277 -6.2577 4.7708 53 1 0.6576 -6.0993 -0.0228 54 1 1.8997 -5.2016 -1.9453 55 1 2.6713 -2.8673 -1.9379 There are 69 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 69 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_4279154_12335854.mol2 55 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 19:44:11 Heat of formation + Delta-G solvation = -5.213721 kcal Electronic energy + Delta-G solvation = -33460.035045 eV Core-core repulsion = 29235.361722 eV Total energy + Delta-G solvation = -4224.673323 eV No. of doubly occupied orbitals = 69 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 369.209 amu Computer time = 1.71 seconds Orbital eigenvalues (eV) -42.92101 -41.51971 -39.99215 -39.04077 -37.68156 -35.90138 -34.41056 -33.74512 -32.72329 -31.85020 -31.78875 -30.37725 -30.17947 -27.27243 -27.12525 -25.02921 -24.67686 -23.79159 -23.68755 -22.34515 -21.81724 -21.11866 -20.83023 -20.22562 -18.78699 -17.74459 -17.53112 -17.38462 -17.33054 -16.72848 -16.34919 -15.90975 -15.87222 -15.46854 -15.26186 -15.24135 -15.20023 -15.05522 -14.95540 -14.70614 -14.37359 -14.26531 -14.19410 -14.05546 -13.72975 -13.63656 -13.48698 -13.28245 -13.27288 -13.22841 -13.13836 -12.93871 -12.70490 -12.57738 -12.50949 -12.15524 -12.13586 -11.95901 -11.81091 -11.73174 -11.35559 -11.20225 -11.06205 -10.48525 -10.35920 -10.29116 -10.09999 -9.53813 -8.85970 -4.95533 -0.46625 -0.07860 1.05428 1.42100 1.60450 1.65004 1.71977 1.81623 1.98069 2.03250 2.55475 3.41748 3.61324 3.64696 3.65577 3.68747 3.69830 3.84963 3.88617 3.90841 3.96054 4.06701 4.08356 4.14555 4.17114 4.31198 4.35135 4.39061 4.40468 4.43486 4.50305 4.53706 4.56181 4.62340 4.62892 4.68060 4.70848 4.74413 4.76890 4.92211 4.95239 4.96414 4.98940 5.00743 5.04812 5.06304 5.09879 5.11577 5.14905 5.15613 5.20161 5.30863 5.33821 5.37849 5.40548 5.51606 5.54333 5.96793 6.12761 6.37119 6.44059 6.86617 7.03757 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.084 4.084 2 C 0.012 3.988 3 C -0.193 4.193 4 C -0.206 4.206 5 C -0.035 4.035 6 O -0.557 6.557 7 Si 0.786 3.214 8 C 0.034 3.966 9 C -0.085 4.085 10 N -0.407 5.407 11 C 0.098 3.902 12 C -0.068 4.068 13 C -0.133 4.133 14 C 0.557 3.443 15 O -0.581 6.581 16 N -0.704 5.704 17 C 0.146 3.854 18 H 0.063 0.937 19 C -0.118 4.118 20 C -0.111 4.111 21 C -0.090 4.090 22 H 0.079 0.921 23 C -0.150 4.150 24 C -0.111 4.111 25 C -0.125 4.125 26 C -0.065 4.065 27 C -0.099 4.099 28 C -0.084 4.084 29 H 0.084 0.916 30 H 0.052 0.948 31 H 0.094 0.906 32 H 0.164 0.836 33 H 0.095 0.905 34 H 0.392 0.608 35 H -0.300 1.300 36 H -0.299 1.299 37 H 0.065 0.935 38 H 0.073 0.927 39 H 0.088 0.912 40 H 0.113 0.887 41 H 0.416 0.584 42 H 0.077 0.923 43 H 0.088 0.912 44 H 0.056 0.944 45 H 0.081 0.919 46 H 0.061 0.939 47 H 0.054 0.946 48 H 0.049 0.951 49 H 0.052 0.948 50 H 0.065 0.935 51 H 0.078 0.922 52 H 0.040 0.960 53 H 0.169 0.831 54 H 0.177 0.823 55 H 0.145 0.855 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.294 -7.068 -6.502 10.153 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.096 4.096 3 C -0.217 4.217 4 C -0.212 4.212 5 C -0.146 4.146 6 O -0.365 6.365 7 Si 0.693 3.307 8 C -0.075 4.075 9 C -0.142 4.142 10 N -0.082 5.082 11 C 0.009 3.991 12 C -0.089 4.089 13 C -0.137 4.137 14 C 0.345 3.655 15 O -0.461 6.461 16 N -0.356 5.356 17 C 0.042 3.958 18 H 0.081 0.919 19 C -0.156 4.156 20 C -0.149 4.149 21 C -0.109 4.109 22 H 0.098 0.902 23 C -0.207 4.207 24 C -0.150 4.150 25 C -0.163 4.163 26 C -0.083 4.083 27 C -0.117 4.117 28 C -0.104 4.104 29 H 0.103 0.897 30 H 0.071 0.929 31 H 0.112 0.888 32 H 0.182 0.818 33 H 0.112 0.888 34 H 0.242 0.758 35 H -0.227 1.227 36 H -0.227 1.227 37 H 0.084 0.916 38 H 0.092 0.908 39 H 0.107 0.893 40 H 0.131 0.869 41 H 0.255 0.745 42 H 0.096 0.904 43 H 0.107 0.893 44 H 0.075 0.925 45 H 0.099 0.901 46 H 0.081 0.919 47 H 0.073 0.927 48 H 0.069 0.931 49 H 0.071 0.929 50 H 0.084 0.916 51 H 0.097 0.903 52 H 0.058 0.942 53 H 0.187 0.813 54 H 0.194 0.806 55 H 0.162 0.838 Dipole moment (debyes) X Y Z Total from point charges -2.989 -6.484 -4.933 8.678 hybrid contribution 0.359 -0.291 0.573 0.736 sum -2.630 -6.775 -4.360 8.475 Atomic orbital electron populations 1.20396 0.86821 1.03448 1.03499 1.20809 0.94419 0.85104 1.09308 1.20841 0.91538 0.98451 1.10833 1.19796 0.95351 0.92827 1.13255 1.24393 0.93247 1.08614 0.88342 1.86413 1.44175 1.88921 1.16969 0.93630 0.80349 0.74268 0.82436 1.20579 0.84355 0.94542 1.08069 1.20378 0.93334 0.97943 1.02591 1.41510 1.05638 1.03306 1.57703 1.17671 1.01905 0.83850 0.95679 1.21100 0.96142 0.95082 0.96536 1.19748 1.03236 0.94456 0.96234 1.18478 0.78562 0.82307 0.86194 1.90793 1.58390 1.59650 1.37314 1.45866 1.56552 1.11216 1.21941 1.21038 0.92723 0.96181 0.85891 0.91891 1.21773 0.98677 0.96418 0.98716 1.21555 0.97586 1.00998 0.94797 1.21159 0.96699 0.97064 0.95954 0.90241 1.21838 1.00196 1.00939 0.97734 1.21548 0.98576 0.97833 0.96997 1.21862 0.98069 1.00257 0.96138 1.21794 0.94987 1.00543 0.91025 1.21466 0.96344 0.94319 0.99551 1.21660 0.98047 0.94514 0.96137 0.89742 0.92853 0.88777 0.81845 0.88794 0.75803 1.22714 1.22675 0.91591 0.90789 0.89299 0.86894 0.74485 0.90389 0.89328 0.92487 0.90077 0.91947 0.92726 0.93145 0.92894 0.91579 0.90314 0.94153 0.81325 0.80573 0.83763 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.12 10.08 71.24 0.72 0.59 16 2 C 0.01 0.06 6.81 41.04 0.28 0.34 16 3 C -0.19 -0.86 9.27 22.15 0.21 -0.65 16 4 C -0.21 -1.20 5.35 -19.98 -0.11 -1.30 16 5 C -0.03 -0.15 2.50 71.24 0.18 0.03 16 6 O -0.56 -1.87 12.88 -148.98 -1.92 -3.78 16 7 Si 0.79 1.91 30.81 68.60 2.11 4.02 16 8 C 0.03 0.22 6.81 41.04 0.28 0.50 16 9 C -0.09 -0.26 9.87 71.24 0.70 0.44 16 10 N -0.41 -2.44 2.79 -320.37 -0.89 -3.34 16 11 C 0.10 0.34 5.01 38.04 0.19 0.53 16 12 C -0.07 -0.40 8.34 22.65 0.19 -0.21 16 13 C -0.13 -0.23 5.87 -20.10 -0.12 -0.35 16 14 C 0.56 3.09 7.74 86.79 0.67 3.76 16 15 O -0.58 -8.96 16.01 -3.90 -0.06 -9.02 16 16 N -0.70 1.30 5.03 -445.38 -2.24 -0.94 16 17 C 0.15 -0.04 2.46 44.99 0.11 0.07 16 18 H 0.06 0.36 7.58 -2.39 -0.02 0.34 16 19 C -0.12 0.68 5.39 30.59 0.16 0.85 16 20 C -0.11 0.48 5.20 30.59 0.16 0.64 16 21 C -0.09 0.29 2.72 -10.79 -0.03 0.26 16 22 H 0.08 -0.35 8.14 -2.39 -0.02 -0.37 16 23 C -0.15 0.39 9.19 71.98 0.66 1.05 16 24 C -0.11 0.01 5.20 30.59 0.16 0.17 16 25 C -0.12 -0.10 5.49 30.60 0.17 0.07 16 26 C -0.07 0.42 9.54 22.54 0.21 0.63 16 27 C -0.10 0.73 10.02 22.21 0.22 0.95 16 28 C -0.08 0.19 8.74 22.43 0.20 0.39 16 29 H 0.08 -0.09 8.14 -2.38 -0.02 -0.11 16 30 H 0.05 0.20 6.86 -2.38 -0.02 0.18 16 31 H 0.09 -0.09 8.14 -2.39 -0.02 -0.11 16 32 H 0.16 -0.08 6.59 -2.91 -0.02 -0.10 16 33 H 0.09 0.55 7.96 -2.39 -0.02 0.53 16 34 H 0.39 -1.66 8.70 -74.06 -0.64 -2.31 16 35 H -0.30 -2.73 7.11 99.48 0.71 -2.02 16 36 H -0.30 -2.61 7.11 99.48 0.71 -1.90 16 37 H 0.07 0.23 8.14 -2.39 -0.02 0.21 16 38 H 0.07 0.03 6.83 -2.39 -0.02 0.02 16 39 H 0.09 0.27 7.87 -2.39 -0.02 0.25 16 40 H 0.11 1.26 7.65 -2.91 -0.02 1.24 16 41 H 0.42 -3.90 6.63 -92.71 -0.61 -4.52 16 42 H 0.08 -0.51 8.14 -2.39 -0.02 -0.53 16 43 H 0.09 -0.80 8.14 -2.39 -0.02 -0.82 16 44 H 0.06 -0.12 8.14 -2.39 -0.02 -0.14 16 45 H 0.08 -0.49 8.14 -2.39 -0.02 -0.51 16 46 H 0.06 -0.23 8.14 -2.39 -0.02 -0.25 16 47 H 0.05 -0.12 8.14 -2.39 -0.02 -0.14 16 48 H 0.05 -0.07 8.14 -2.39 -0.02 -0.09 16 49 H 0.05 0.13 8.14 -2.38 -0.02 0.11 16 50 H 0.07 0.00 8.14 -2.39 -0.02 -0.02 16 51 H 0.08 -0.16 8.14 -2.39 -0.02 -0.18 16 52 H 0.04 0.27 8.14 -2.39 -0.02 0.25 16 53 H 0.17 -2.37 6.40 -2.91 -0.02 -2.39 16 54 H 0.18 -2.48 8.06 -2.91 -0.02 -2.50 16 55 H 0.14 -0.58 8.06 -2.91 -0.02 -0.60 16 Total: 0.00 -22.65 434.67 1.88 -20.77 By element: Atomic # 1 Polarization: -16.15 SS G_CDS: -0.33 Total: -16.48 kcal Atomic # 6 Polarization: 3.55 SS G_CDS: 5.22 Total: 8.77 kcal Atomic # 7 Polarization: -1.15 SS G_CDS: -3.13 Total: -4.28 kcal Atomic # 8 Polarization: -10.82 SS G_CDS: -1.98 Total: -12.81 kcal Atomic # 14 Polarization: 1.91 SS G_CDS: 2.11 Total: 4.02 kcal Total: -22.65 1.88 -20.77 kcal The number of atoms in the molecule is 55 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_4279154_12335854.mol2 55 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.556 kcal (2) G-P(sol) polarization free energy of solvation -22.655 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.099 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.885 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -20.770 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.214 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.71 seconds