Wall clock time and date at job start Sun Mar 7 2021 19:44:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.34804 * 125.90584 * 2 1 4 4 C 1.40995 * 107.48960 * 179.97438 * 3 2 1 5 5 C 1.50700 * 126.25560 * 179.97438 * 4 3 2 6 6 O 1.42898 * 109.47160 * 254.97341 * 5 4 3 7 7 Si 1.86302 * 109.47530 * 14.97635 * 5 4 3 8 8 C 1.34805 * 107.48148 * 359.73304 * 4 3 2 9 9 C 1.50698 * 125.89971 * 180.25809 * 8 4 3 10 10 N 1.36645 * 108.19672 * 0.42310 * 8 4 3 11 11 C 1.39673 * 125.68023 * 179.82823 * 10 8 4 12 12 C 1.40199 * 120.15096 * 89.72290 * 11 10 8 13 13 C 1.47576 * 120.19589 * 359.95343 * 12 11 10 14 14 O 1.21584 * 119.99550 * 0.02562 * 13 12 11 15 15 N 1.34772 * 119.99831 * 179.97438 * 13 12 11 16 16 C 1.46506 * 120.00008 * 180.02562 * 15 13 12 17 17 H 1.09000 * 109.46872 * 35.00131 * 16 15 13 18 18 C 1.52997 * 109.47277 * 155.00095 * 16 15 13 19 19 C 1.53006 * 109.46974 * 179.97438 * 18 16 15 20 20 C 1.52999 * 109.47000 * 300.00410 * 19 18 16 21 21 H 1.09000 * 109.47160 * 299.99635 * 20 19 18 22 22 C 1.53006 * 109.46626 * 180.02562 * 20 19 18 23 23 C 1.52997 * 109.47592 * 59.99968 * 20 19 18 24 24 C 1.52996 * 109.46975 * 300.00042 * 23 20 19 25 25 C 1.39663 * 119.61117 * 180.22746 * 12 11 10 26 26 C 1.37828 * 119.91567 * 359.49527 * 25 12 11 27 27 C 1.38531 * 120.31534 * 0.50689 * 26 25 12 28 28 C 1.38074 * 120.38566 * 359.74639 * 27 26 25 29 29 H 1.09005 * 109.47014 * 270.04763 * 1 2 3 30 30 H 1.08997 * 109.46953 * 30.04529 * 1 2 3 31 31 H 1.08993 * 109.46773 * 150.04480 * 1 2 3 32 32 H 1.08003 * 126.25316 * 359.93791 * 3 2 1 33 33 H 1.09005 * 109.46893 * 134.97767 * 5 4 3 34 34 H 0.96703 * 114.00036 * 60.00076 * 6 5 4 35 35 H 1.48500 * 109.99592 * 58.67523 * 7 5 4 36 36 H 1.48490 * 110.00171 * 179.97438 * 7 5 4 37 37 H 1.09003 * 109.47316 * 270.19154 * 9 8 4 38 38 H 1.09002 * 109.47288 * 30.19866 * 9 8 4 39 39 H 1.09000 * 109.47111 * 150.19796 * 9 8 4 40 40 H 0.97000 * 120.00562 * 0.02562 * 15 13 12 41 41 H 1.09000 * 109.47140 * 60.00200 * 18 16 15 42 42 H 1.09001 * 109.46922 * 299.99900 * 18 16 15 43 43 H 1.08993 * 109.46765 * 179.97438 * 19 18 16 44 44 H 1.09000 * 109.46866 * 60.00225 * 19 18 16 45 45 H 1.09001 * 109.46801 * 59.99811 * 22 20 19 46 46 H 1.09001 * 109.46998 * 179.97438 * 22 20 19 47 47 H 1.09000 * 109.47050 * 299.99699 * 22 20 19 48 48 H 1.09000 * 109.47140 * 59.99654 * 23 20 19 49 49 H 1.09001 * 109.47375 * 179.97438 * 23 20 19 50 50 H 1.09004 * 109.47368 * 299.99783 * 24 23 20 51 51 H 1.08996 * 109.47261 * 180.02562 * 24 23 20 52 52 H 1.08002 * 120.04080 * 179.72540 * 25 12 11 53 53 H 1.07999 * 119.84352 * 180.25280 * 26 25 12 54 54 H 1.07995 * 119.81096 * 179.71881 * 27 26 25 55 55 H 1.08004 * 119.96111 * 180.02562 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2976 1.0919 0.0000 4 6 3.6353 0.6465 0.0006 5 6 4.8648 1.5179 0.0003 6 8 5.4557 1.5075 -1.3008 7 14 4.3903 3.2617 0.4529 8 6 3.6133 -0.7014 0.0069 9 6 4.8195 -1.6048 0.0153 10 7 2.3085 -1.1069 0.0007 11 6 1.8672 -2.4321 0.0009 12 6 1.6437 -3.0997 1.2133 13 6 1.8744 -2.4068 2.4957 14 8 2.2589 -1.2534 2.5028 15 7 1.6578 -3.0522 3.6588 16 6 1.8862 -2.3642 4.9319 17 1 1.6157 -1.3132 4.8305 18 6 1.0273 -3.0090 6.0215 19 6 1.2664 -2.2908 7.3512 20 6 2.7437 -2.4031 7.7330 21 1 3.0139 -3.4542 7.8342 22 6 2.9825 -1.6854 9.0631 23 6 3.6026 -1.7582 6.6435 24 6 3.3636 -2.4764 5.3139 25 6 1.2071 -4.4263 1.2003 26 6 0.9890 -5.0664 -0.0006 27 6 1.2107 -4.4037 -1.1967 28 6 1.6474 -3.0938 -1.1988 29 1 -0.3633 0.0009 1.0277 30 1 -0.3633 0.8896 -0.5145 31 1 -0.3632 -0.8903 -0.5131 32 1 1.9667 2.1200 -0.0009 33 1 5.5811 1.1358 0.7277 34 1 4.8735 1.8353 -1.9998 35 1 3.7457 3.2816 1.7905 36 1 5.5942 4.1309 0.4567 37 1 5.1159 -1.8248 -1.0103 38 1 5.6410 -1.1093 0.5327 39 1 4.5739 -2.5339 0.5297 40 1 1.3507 -3.9723 3.6532 41 1 1.2978 -4.0601 6.1229 42 1 -0.0251 -2.9294 5.7491 43 1 0.6541 -2.7500 8.1272 44 1 0.9961 -1.2397 7.2501 45 1 2.3706 -2.1453 9.8390 46 1 4.0349 -1.7658 9.3354 47 1 2.7122 -0.6343 8.9624 48 1 3.3324 -0.7071 6.5423 49 1 4.6551 -1.8379 6.9158 50 1 3.6338 -3.5276 5.4149 51 1 3.9758 -2.0173 4.5377 52 1 1.0371 -4.9486 2.1302 53 1 0.6474 -6.0910 -0.0092 54 1 1.0415 -4.9145 -2.1330 55 1 1.8178 -2.5835 -2.1353 There are 69 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 69 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_4279154_12335856.mol2 55 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 19:44:15 Heat of formation + Delta-G solvation = 6.519419 kcal Electronic energy + Delta-G solvation = -35461.310482 eV Core-core repulsion = 31237.145946 eV Total energy + Delta-G solvation = -4224.164536 eV No. of doubly occupied orbitals = 69 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 369.209 amu Computer time = 1.64 seconds Orbital eigenvalues (eV) -42.86739 -41.26154 -39.94694 -38.96630 -37.67671 -35.84558 -34.16966 -33.59510 -33.11646 -31.84783 -31.48655 -30.40847 -30.13366 -27.39097 -26.92922 -24.97368 -24.60820 -23.82791 -23.54440 -22.41647 -21.63069 -21.05803 -20.78591 -20.26134 -18.90941 -17.85117 -17.58561 -17.46443 -16.67884 -16.53400 -16.22834 -15.95480 -15.82312 -15.58403 -15.31240 -15.27045 -15.20255 -14.95021 -14.74771 -14.63274 -14.38656 -14.27922 -14.17726 -14.01205 -13.72014 -13.59353 -13.40628 -13.30638 -13.25287 -13.20873 -13.07482 -12.92159 -12.78119 -12.60096 -12.40267 -12.19088 -12.17846 -11.99294 -11.77144 -11.72912 -11.37261 -11.20788 -10.95186 -10.35714 -10.31152 -10.12439 -10.00880 -9.52340 -8.67810 -4.99799 -0.42755 0.03655 1.19921 1.41000 1.68203 1.74322 1.88376 1.95423 1.98016 2.03533 2.59914 3.47100 3.58453 3.63140 3.65474 3.68269 3.76323 3.84390 3.95523 4.01741 4.04434 4.10658 4.14432 4.19315 4.23278 4.28775 4.31799 4.35796 4.40686 4.44497 4.48515 4.49636 4.52737 4.64081 4.66708 4.68223 4.70712 4.72918 4.75156 4.88723 4.90619 4.92791 4.99115 5.00154 5.03805 5.06456 5.09962 5.15518 5.18345 5.21276 5.27619 5.28133 5.32836 5.41216 5.44848 5.48956 5.62981 6.12358 6.26906 6.41426 6.63331 6.87030 7.12222 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 C 0.031 3.969 3 C -0.202 4.202 4 C -0.209 4.209 5 C -0.035 4.035 6 O -0.558 6.558 7 Si 0.790 3.210 8 C 0.051 3.949 9 C -0.071 4.071 10 N -0.391 5.391 11 C 0.143 3.857 12 C -0.147 4.147 13 C 0.543 3.457 14 O -0.548 6.548 15 N -0.711 5.711 16 C 0.152 3.848 17 H 0.057 0.943 18 C -0.117 4.117 19 C -0.111 4.111 20 C -0.089 4.089 21 H 0.080 0.920 22 C -0.149 4.149 23 C -0.110 4.110 24 C -0.121 4.121 25 C -0.076 4.076 26 C -0.107 4.107 27 C -0.076 4.076 28 C -0.122 4.122 29 H 0.057 0.943 30 H 0.098 0.902 31 H 0.064 0.936 32 H 0.154 0.846 33 H 0.085 0.915 34 H 0.392 0.608 35 H -0.306 1.306 36 H -0.295 1.295 37 H 0.078 0.922 38 H 0.069 0.931 39 H 0.051 0.949 40 H 0.412 0.588 41 H 0.087 0.913 42 H 0.075 0.925 43 H 0.082 0.918 44 H 0.054 0.946 45 H 0.063 0.937 46 H 0.054 0.946 47 H 0.048 0.952 48 H 0.049 0.951 49 H 0.064 0.936 50 H 0.076 0.924 51 H 0.035 0.965 52 H 0.160 0.840 53 H 0.170 0.830 54 H 0.165 0.835 55 H 0.137 0.863 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.251 -8.192 -0.826 10.338 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.078 4.078 3 C -0.226 4.226 4 C -0.216 4.216 5 C -0.146 4.146 6 O -0.366 6.366 7 Si 0.698 3.302 8 C -0.059 4.059 9 C -0.129 4.129 10 N -0.066 5.066 11 C 0.053 3.947 12 C -0.151 4.151 13 C 0.331 3.669 14 O -0.425 6.425 15 N -0.364 5.364 16 C 0.048 3.952 17 H 0.076 0.924 18 C -0.155 4.155 19 C -0.149 4.149 20 C -0.107 4.107 21 H 0.098 0.902 22 C -0.207 4.207 23 C -0.149 4.149 24 C -0.159 4.159 25 C -0.095 4.095 26 C -0.124 4.124 27 C -0.095 4.095 28 C -0.141 4.141 29 H 0.076 0.924 30 H 0.117 0.883 31 H 0.083 0.917 32 H 0.172 0.828 33 H 0.103 0.897 34 H 0.241 0.759 35 H -0.234 1.234 36 H -0.223 1.223 37 H 0.097 0.903 38 H 0.088 0.912 39 H 0.070 0.930 40 H 0.250 0.750 41 H 0.105 0.895 42 H 0.094 0.906 43 H 0.100 0.900 44 H 0.073 0.927 45 H 0.082 0.918 46 H 0.073 0.927 47 H 0.068 0.932 48 H 0.068 0.932 49 H 0.083 0.917 50 H 0.094 0.906 51 H 0.054 0.946 52 H 0.178 0.822 53 H 0.188 0.812 54 H 0.182 0.818 55 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges -5.493 -7.261 0.084 9.106 hybrid contribution 0.409 -0.557 0.444 0.821 sum -5.085 -7.819 0.527 9.341 Atomic orbital electron populations 1.20280 0.87147 1.03935 1.02019 1.20531 0.93946 0.85012 1.08312 1.20639 0.91755 0.98037 1.12135 1.19591 0.95033 0.92846 1.14098 1.24367 0.93264 1.08893 0.88048 1.86400 1.44148 1.89078 1.16945 0.93697 0.79979 0.74315 0.82204 1.20183 0.84227 0.94121 1.07418 1.20158 0.93313 0.96898 1.02522 1.41017 1.05202 1.02996 1.57339 1.17840 0.99838 0.83618 0.93403 1.20261 1.06380 0.96463 0.91983 1.18483 0.77691 0.86160 0.84600 1.90906 1.45842 1.18029 1.87772 1.45886 1.68463 1.17274 1.04768 1.20910 0.95211 0.96622 0.82449 0.92429 1.21759 0.99515 1.00796 0.93405 1.21550 0.96111 1.00633 0.96567 1.21145 0.94942 1.00370 0.94276 0.90207 1.21838 1.01808 1.00312 0.96721 1.21535 1.00204 0.99097 0.94021 1.21815 0.95806 1.01368 0.96941 1.21619 0.95590 0.91312 1.00952 1.21689 0.97747 1.01956 0.91030 1.21702 0.94500 0.92643 1.00637 1.21476 0.99920 0.96206 0.96454 0.92431 0.88292 0.91740 0.82828 0.89749 0.75906 1.23411 1.22279 0.90322 0.91201 0.93026 0.75023 0.89471 0.90598 0.89973 0.92678 0.91777 0.92684 0.93250 0.93247 0.91687 0.90561 0.94569 0.82229 0.81240 0.81768 0.84558 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.31 10.09 71.24 0.72 0.41 16 2 C 0.03 0.29 6.00 41.02 0.25 0.54 16 3 C -0.20 -1.95 9.27 22.16 0.21 -1.74 16 4 C -0.21 -2.35 5.35 -19.98 -0.11 -2.46 16 5 C -0.03 -0.33 2.60 71.24 0.19 -0.14 16 6 O -0.56 -4.24 12.88 -148.98 -1.92 -6.16 16 7 Si 0.79 5.32 30.81 68.60 2.11 7.43 16 8 C 0.05 0.59 5.98 41.02 0.25 0.84 16 9 C -0.07 -0.64 9.87 71.24 0.70 0.06 16 10 N -0.39 -3.71 1.45 -319.54 -0.46 -4.18 16 11 C 0.14 0.73 4.52 38.49 0.17 0.90 16 12 C -0.15 -0.43 5.89 -19.99 -0.12 -0.55 16 13 C 0.54 3.89 7.73 86.71 0.67 4.56 16 14 O -0.55 -8.74 13.34 -3.98 -0.05 -8.80 16 15 N -0.71 -0.31 5.03 -445.66 -2.24 -2.55 16 16 C 0.15 0.30 2.46 44.99 0.11 0.41 16 17 H 0.06 0.50 7.58 -2.39 -0.02 0.48 16 18 C -0.12 0.43 5.39 30.60 0.16 0.60 16 19 C -0.11 0.27 5.20 30.60 0.16 0.43 16 20 C -0.09 0.13 2.72 -10.79 -0.03 0.10 16 21 H 0.08 -0.22 8.14 -2.39 -0.02 -0.24 16 22 C -0.15 0.17 9.19 71.98 0.66 0.83 16 23 C -0.11 -0.24 5.21 30.59 0.16 -0.08 16 24 C -0.12 -0.38 5.49 30.59 0.17 -0.21 16 25 C -0.08 0.39 9.54 22.52 0.21 0.61 16 26 C -0.11 0.86 10.02 22.24 0.22 1.08 16 27 C -0.08 0.47 10.03 22.30 0.22 0.69 16 28 C -0.12 0.02 9.96 22.35 0.22 0.24 16 29 H 0.06 0.34 8.14 -2.38 -0.02 0.32 16 30 H 0.10 -0.01 8.14 -2.39 -0.02 -0.03 16 31 H 0.06 0.16 7.83 -2.39 -0.02 0.14 16 32 H 0.15 0.77 6.59 -2.91 -0.02 0.75 16 33 H 0.08 1.02 7.49 -2.38 -0.02 1.00 16 34 H 0.39 -0.15 8.70 -74.06 -0.64 -0.80 16 35 H -0.31 -4.40 7.11 99.48 0.71 -3.69 16 36 H -0.29 -3.49 7.11 99.48 0.71 -2.78 16 37 H 0.08 0.53 8.14 -2.39 -0.02 0.51 16 38 H 0.07 0.69 7.50 -2.39 -0.02 0.67 16 39 H 0.05 0.46 7.83 -2.39 -0.02 0.44 16 40 H 0.41 -2.67 6.63 -92.71 -0.62 -3.29 16 41 H 0.09 -0.60 8.14 -2.39 -0.02 -0.62 16 42 H 0.08 -0.33 8.14 -2.39 -0.02 -0.35 16 43 H 0.08 -0.37 8.14 -2.39 -0.02 -0.39 16 44 H 0.05 0.00 8.14 -2.39 -0.02 -0.02 16 45 H 0.06 -0.16 8.14 -2.39 -0.02 -0.18 16 46 H 0.05 -0.04 8.14 -2.39 -0.02 -0.06 16 47 H 0.05 0.01 8.14 -2.39 -0.02 0.00 16 48 H 0.05 0.26 8.14 -2.39 -0.02 0.24 16 49 H 0.06 0.14 8.14 -2.39 -0.02 0.12 16 50 H 0.08 0.03 8.14 -2.39 -0.02 0.01 16 51 H 0.04 0.34 8.14 -2.39 -0.02 0.32 16 52 H 0.16 -1.83 6.40 -2.91 -0.02 -1.84 16 53 H 0.17 -2.41 8.06 -2.91 -0.02 -2.44 16 54 H 0.16 -1.89 8.06 -2.91 -0.02 -1.91 16 55 H 0.14 -0.09 8.06 -2.91 -0.02 -0.12 16 Total: 0.00 -23.20 433.10 2.30 -20.90 By element: Atomic # 1 Polarization: -13.42 SS G_CDS: -0.34 Total: -13.76 kcal Atomic # 6 Polarization: 1.91 SS G_CDS: 5.20 Total: 7.11 kcal Atomic # 7 Polarization: -4.02 SS G_CDS: -2.70 Total: -6.73 kcal Atomic # 8 Polarization: -12.99 SS G_CDS: -1.97 Total: -14.96 kcal Atomic # 14 Polarization: 5.32 SS G_CDS: 2.11 Total: 7.43 kcal Total: -23.20 2.30 -20.90 kcal The number of atoms in the molecule is 55 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_4279154_12335856.mol2 55 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.417 kcal (2) G-P(sol) polarization free energy of solvation -23.200 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.217 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.303 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -20.897 kcal (6) G-S(sol) free energy of system = (1) + (5) 6.519 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.64 seconds