Wall clock time and date at job start Sun Mar 7 2021 19:44:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09001 * 109.46832 * 2 1 4 4 C 1.53006 * 109.47127 * 119.99679 * 2 1 3 5 5 C 1.52997 * 109.47127 * 179.97438 * 4 2 1 6 6 C 1.53000 * 109.47060 * 300.00449 * 5 4 2 7 7 H 1.09001 * 109.47194 * 299.99650 * 6 5 4 8 8 N 1.46499 * 109.46840 * 180.02562 * 6 5 4 9 9 C 1.34782 * 120.00074 * 155.00031 * 8 6 5 10 10 O 1.21689 * 119.99621 * 359.97438 * 9 8 6 11 11 C 1.46429 * 119.99926 * 180.02562 * 9 8 6 12 12 C 1.34809 * 119.99605 * 180.02562 * 11 9 8 13 13 C 1.47214 * 119.99641 * 179.97438 * 12 11 9 14 14 C 1.39834 * 120.17006 * 359.72512 * 13 12 11 15 15 C 1.37891 * 119.82203 * 179.80974 * 14 13 12 16 16 C 1.38389 * 120.17520 * 0.44155 * 15 14 13 17 17 C 1.50708 * 119.83082 * 179.76735 * 16 15 14 18 18 O 1.42900 * 109.47049 * 120.02106 * 17 16 15 19 19 Si 1.86292 * 109.47009 * 0.02562 * 17 16 15 20 20 C 1.38406 * 120.34679 * 359.78483 * 16 15 14 21 21 C 1.37899 * 120.16686 * 0.02562 * 20 16 15 22 22 C 1.52996 * 109.47328 * 60.00126 * 6 5 4 23 23 C 1.52997 * 109.47232 * 239.99801 * 2 1 3 24 24 H 1.09001 * 109.47289 * 180.02562 * 1 2 3 25 25 H 1.09004 * 109.47261 * 300.00019 * 1 2 3 26 26 H 1.09002 * 109.47153 * 60.00191 * 1 2 3 27 27 H 1.08998 * 109.46505 * 59.99871 * 4 2 1 28 28 H 1.08996 * 109.46884 * 300.00752 * 4 2 1 29 29 H 1.09002 * 109.47153 * 180.02562 * 5 4 2 30 30 H 1.09001 * 109.46832 * 60.00321 * 5 4 2 31 31 H 0.97002 * 120.00427 * 334.99530 * 8 6 5 32 32 H 1.08000 * 120.00413 * 359.97438 * 11 9 8 33 33 H 1.08000 * 120.00496 * 359.97438 * 12 11 9 34 34 H 1.07998 * 120.08755 * 359.97438 * 14 13 12 35 35 H 1.08008 * 119.91078 * 180.20887 * 15 14 13 36 36 H 1.09000 * 109.46876 * 240.01831 * 17 16 15 37 37 H 0.96692 * 114.00299 * 299.99746 * 18 17 16 38 38 H 1.48498 * 110.00113 * 180.02562 * 19 17 16 39 39 H 1.48507 * 110.00164 * 301.32276 * 19 17 16 40 40 H 1.07996 * 119.91767 * 179.97438 * 20 16 15 41 41 H 1.07994 * 120.08420 * 179.97438 * 21 20 16 42 42 H 1.08992 * 109.47554 * 59.99639 * 22 6 5 43 43 H 1.09004 * 109.47108 * 179.97438 * 22 6 5 44 44 H 1.09002 * 109.47045 * 59.99942 * 23 2 1 45 45 H 1.09001 * 109.47375 * 299.99867 * 23 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7212 1.2493 5 6 3.5700 -0.7218 1.2490 6 6 4.0794 -1.4434 -0.0003 7 1 3.7158 -2.4709 0.0000 8 7 5.5444 -1.4444 -0.0002 9 6 6.2177 -2.4010 -0.6697 10 8 5.6086 -3.2641 -1.2738 11 6 7.6820 -2.4023 -0.6692 12 6 8.3553 -3.3589 -1.3393 13 6 9.8275 -3.3599 -1.3392 14 6 10.5309 -2.3671 -0.6500 15 6 11.9097 -2.3772 -0.6515 16 6 12.5974 -3.3611 -1.3401 17 6 14.1045 -3.3617 -1.3408 18 8 14.5806 -4.5830 -0.7717 19 14 14.7265 -1.9233 -0.3335 20 6 11.9084 -4.3444 -2.0285 21 6 10.5294 -4.3502 -2.0333 22 6 3.5695 -0.7221 -1.2495 23 6 2.0400 -0.7213 -1.2492 24 1 -0.3634 -1.0277 0.0005 25 1 -0.3634 0.5139 0.8900 26 1 -0.3633 0.5138 -0.8900 27 1 1.6766 -1.7488 1.2493 28 1 1.6765 -0.2074 2.1392 29 1 3.9333 -1.2360 2.1388 30 1 3.9336 0.3058 1.2488 31 1 6.0300 -0.7566 0.4816 32 1 8.2225 -1.6366 -0.1327 33 1 7.8148 -4.1244 -1.8761 34 1 9.9956 -1.5961 -0.1159 35 1 12.4545 -1.6130 -0.1169 36 1 14.4674 -3.2722 -2.3648 37 1 14.2958 -4.7291 0.1406 38 1 16.2114 -1.9122 -0.3268 39 1 14.2121 -0.6489 -0.8962 40 1 12.4521 -5.1087 -2.5639 41 1 9.9932 -5.1179 -2.5713 42 1 3.9331 0.3054 -1.2497 43 1 3.9328 -1.2360 -2.1395 44 1 1.6766 -0.2075 -2.1392 45 1 1.6767 -1.7490 -1.2492 There are 56 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 56 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_4279154_12360594.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 19:44:30 Heat of formation + Delta-G solvation = -42.663338 kcal Electronic energy + Delta-G solvation = -23411.415370 eV Core-core repulsion = 19973.609158 eV Total energy + Delta-G solvation = -3437.806211 eV No. of doubly occupied orbitals = 56 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 302.167 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -41.18153 -40.56826 -39.33917 -37.77366 -35.72253 -35.06591 -32.44137 -32.09033 -31.76879 -31.05848 -27.62289 -26.48756 -24.20525 -23.87298 -23.68034 -22.31740 -21.72158 -20.99811 -20.23244 -18.81345 -18.07985 -17.57172 -16.85241 -16.56526 -16.22312 -16.14321 -15.80969 -15.45778 -15.20769 -15.19885 -15.08277 -14.89509 -14.56046 -14.23538 -14.18334 -13.81652 -13.64599 -13.27665 -13.21943 -13.14687 -13.01879 -12.54156 -12.27093 -12.10620 -12.03771 -11.93140 -11.72791 -11.66772 -11.36831 -11.30664 -11.13867 -10.94746 -10.44031 -10.09965 -9.99343 -9.24564 -5.00093 -0.55810 0.38615 0.88193 1.31026 1.63298 1.97069 2.17390 2.23731 2.81143 3.47044 3.56905 3.64992 3.68546 3.73141 3.80650 3.91971 3.94412 4.09709 4.16199 4.19944 4.20355 4.35285 4.40961 4.43623 4.44760 4.51261 4.53486 4.56874 4.76604 4.80388 4.83429 4.94534 4.97017 5.00186 5.07893 5.09296 5.12850 5.16452 5.18032 5.23805 5.34644 5.37540 5.40849 5.47075 5.50916 5.56930 5.59307 5.89320 6.55880 6.75419 7.22862 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.091 4.091 3 H 0.078 0.922 4 C -0.112 4.112 5 C -0.118 4.118 6 C 0.145 3.855 7 H 0.061 0.939 8 N -0.709 5.709 9 C 0.540 3.460 10 O -0.594 6.594 11 C -0.207 4.207 12 C -0.022 4.022 13 C -0.081 4.081 14 C -0.094 4.094 15 C -0.122 4.122 16 C -0.112 4.112 17 C -0.080 4.080 18 O -0.556 6.556 19 Si 0.782 3.218 20 C -0.108 4.108 21 C -0.104 4.104 22 C -0.124 4.124 23 C -0.111 4.111 24 H 0.050 0.950 25 H 0.061 0.939 26 H 0.054 0.946 27 H 0.056 0.944 28 H 0.079 0.921 29 H 0.075 0.925 30 H 0.085 0.915 31 H 0.418 0.582 32 H 0.165 0.835 33 H 0.120 0.880 34 H 0.158 0.842 35 H 0.151 0.849 36 H 0.105 0.895 37 H 0.396 0.604 38 H -0.303 1.303 39 H -0.282 1.282 40 H 0.128 0.872 41 H 0.135 0.865 42 H 0.076 0.924 43 H 0.041 0.959 44 H 0.066 0.934 45 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.114 4.826 5.770 7.523 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.109 4.109 3 H 0.096 0.904 4 C -0.150 4.150 5 C -0.156 4.156 6 C 0.041 3.959 7 H 0.079 0.921 8 N -0.359 5.359 9 C 0.330 3.670 10 O -0.476 6.476 11 C -0.227 4.227 12 C -0.042 4.042 13 C -0.081 4.081 14 C -0.112 4.112 15 C -0.139 4.139 16 C -0.113 4.113 17 C -0.189 4.189 18 O -0.364 6.364 19 Si 0.688 3.312 20 C -0.126 4.126 21 C -0.122 4.122 22 C -0.162 4.162 23 C -0.149 4.149 24 H 0.069 0.931 25 H 0.080 0.920 26 H 0.073 0.927 27 H 0.075 0.925 28 H 0.098 0.902 29 H 0.094 0.906 30 H 0.104 0.896 31 H 0.255 0.745 32 H 0.183 0.817 33 H 0.138 0.862 34 H 0.176 0.824 35 H 0.168 0.832 36 H 0.123 0.877 37 H 0.246 0.754 38 H -0.231 1.231 39 H -0.208 1.208 40 H 0.146 0.854 41 H 0.153 0.847 42 H 0.094 0.906 43 H 0.060 0.940 44 H 0.084 0.916 45 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges 0.391 4.911 4.793 6.874 hybrid contribution -0.012 -0.384 -0.909 0.987 sum 0.379 4.527 3.884 5.977 Atomic orbital electron populations 1.21837 0.95009 1.01761 1.02074 1.21156 0.95688 0.99805 0.94246 0.90389 1.21557 0.94314 1.00864 0.98219 1.21759 0.96353 1.01520 0.95928 1.20970 0.79116 0.99774 0.96080 0.92118 1.45882 1.07262 1.30191 1.52584 1.18800 0.89096 0.80862 0.78204 1.90811 1.71464 1.39564 1.45803 1.23029 0.91770 1.02820 1.05110 1.22358 0.92151 0.96229 0.93504 1.19111 0.92119 0.96978 0.99887 1.21660 0.94004 0.97826 0.97690 1.21185 0.94662 0.98532 0.99508 1.20621 0.96298 0.96138 0.98200 1.25279 0.91859 0.97761 1.04034 1.86473 1.75851 1.39805 1.34319 0.93677 0.76594 0.73296 0.87629 1.21063 0.93848 0.98674 0.98971 1.21607 0.94382 0.98117 0.98065 1.21841 0.96332 1.00899 0.97173 1.21540 0.94248 1.00607 0.98552 0.93096 0.91997 0.92676 0.92475 0.90219 0.90595 0.89607 0.74500 0.81728 0.86209 0.82424 0.83225 0.87718 0.75433 1.23150 1.20839 0.85400 0.84735 0.90583 0.94019 0.91568 0.92860 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 0.31 9.19 71.98 0.66 0.97 16 2 C -0.09 0.21 2.72 -10.79 -0.03 0.19 16 3 H 0.08 -0.27 8.14 -2.39 -0.02 -0.28 16 4 C -0.11 0.37 5.20 30.60 0.16 0.53 16 5 C -0.12 0.52 5.39 30.59 0.16 0.69 16 6 C 0.15 0.10 2.45 44.99 0.11 0.21 16 7 H 0.06 0.41 7.57 -2.39 -0.02 0.39 16 8 N -0.71 0.81 5.07 -446.76 -2.27 -1.46 16 9 C 0.54 2.67 7.71 86.37 0.67 3.34 16 10 O -0.59 -8.77 15.89 -4.31 -0.07 -8.84 16 11 C -0.21 0.19 9.41 23.62 0.22 0.41 16 12 C -0.02 -0.03 9.46 23.84 0.23 0.19 16 13 C -0.08 0.00 5.87 -20.15 -0.12 -0.12 16 14 C -0.09 0.35 9.41 22.57 0.21 0.56 16 15 C -0.12 0.46 8.65 22.22 0.19 0.65 16 16 C -0.11 0.11 5.40 -19.79 -0.11 0.01 16 17 C -0.08 0.11 2.82 71.24 0.20 0.31 16 18 O -0.56 0.14 12.76 -148.98 -1.90 -1.76 16 19 Si 0.78 -2.88 29.77 68.60 2.04 -0.84 16 20 C -0.11 -0.09 9.59 22.23 0.21 0.12 16 21 C -0.10 -0.09 9.80 22.58 0.22 0.13 16 22 C -0.12 -0.19 5.49 30.58 0.17 -0.02 16 23 C -0.11 -0.06 5.20 30.58 0.16 0.10 16 24 H 0.05 -0.05 8.14 -2.39 -0.02 -0.07 16 25 H 0.06 -0.19 8.14 -2.38 -0.02 -0.21 16 26 H 0.05 -0.10 8.14 -2.39 -0.02 -0.12 16 27 H 0.06 -0.07 8.14 -2.39 -0.02 -0.09 16 28 H 0.08 -0.40 8.14 -2.39 -0.02 -0.42 16 29 H 0.08 -0.39 8.14 -2.39 -0.02 -0.40 16 30 H 0.09 -0.63 8.14 -2.39 -0.02 -0.65 16 31 H 0.42 -3.44 8.58 -92.71 -0.80 -4.24 16 32 H 0.17 -1.44 6.07 -2.91 -0.02 -1.46 16 33 H 0.12 0.56 7.52 -2.91 -0.02 0.54 16 34 H 0.16 -1.52 6.17 -2.91 -0.02 -1.54 16 35 H 0.15 -1.25 4.86 -2.91 -0.01 -1.26 16 36 H 0.11 0.03 7.96 -2.39 -0.02 0.01 16 37 H 0.40 -3.33 8.70 -74.06 -0.64 -3.97 16 38 H -0.30 -1.36 7.11 99.48 0.71 -0.66 16 39 H -0.28 -0.09 7.11 99.48 0.71 0.62 16 40 H 0.13 0.08 8.06 -2.91 -0.02 0.05 16 41 H 0.13 -0.13 8.06 -2.91 -0.02 -0.15 16 42 H 0.08 -0.07 8.14 -2.39 -0.02 -0.09 16 43 H 0.04 0.29 8.14 -2.38 -0.02 0.27 16 44 H 0.07 0.02 8.14 -2.39 -0.02 0.00 16 45 H 0.05 0.15 8.14 -2.39 -0.02 0.13 16 Total: 0.00 -18.94 362.73 0.71 -18.23 By element: Atomic # 1 Polarization: -13.18 SS G_CDS: -0.41 Total: -13.59 kcal Atomic # 6 Polarization: 4.94 SS G_CDS: 3.32 Total: 8.26 kcal Atomic # 7 Polarization: 0.81 SS G_CDS: -2.27 Total: -1.46 kcal Atomic # 8 Polarization: -8.63 SS G_CDS: -1.97 Total: -10.60 kcal Atomic # 14 Polarization: -2.88 SS G_CDS: 2.04 Total: -0.84 kcal Total: -18.94 0.71 -18.23 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_4279154_12360594.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -24.436 kcal (2) G-P(sol) polarization free energy of solvation -18.940 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.376 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.713 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -18.228 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.663 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds