Wall clock time and date at job start Sun Mar 7 2021 19:44:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09001 * 109.47372 * 2 1 4 4 C 1.53005 * 109.47245 * 120.00032 * 2 1 3 5 5 C 1.52996 * 109.47571 * 180.02562 * 4 2 1 6 6 C 1.53005 * 109.46543 * 299.99799 * 5 4 2 7 7 H 1.09001 * 109.46812 * 299.99751 * 6 5 4 8 8 N 1.46506 * 109.46831 * 180.02562 * 6 5 4 9 9 C 1.34774 * 120.00251 * 84.99772 * 8 6 5 10 10 O 1.21568 * 119.99728 * 0.02562 * 9 8 6 11 11 C 1.47726 * 119.99891 * 179.97438 * 9 8 6 12 12 C 1.39632 * 120.11137 * 179.72581 * 11 9 8 13 13 C 1.37860 * 119.87480 * 179.79133 * 12 11 9 14 14 C 1.50695 * 119.94453 * 180.23110 * 13 12 11 15 15 O 1.42902 * 109.46881 * 15.22791 * 14 13 12 16 16 Si 1.86294 * 109.47526 * 135.23252 * 14 13 12 17 17 C 1.38644 * 120.11527 * 0.46233 * 13 12 11 18 18 F 1.35104 * 119.87675 * 179.76859 * 17 13 12 19 19 C 1.38672 * 120.23977 * 359.79021 * 17 13 12 20 20 C 1.37814 * 120.12118 * 359.97438 * 19 17 13 21 21 C 1.52997 * 109.47452 * 59.99968 * 6 5 4 22 22 C 1.52996 * 109.47131 * 300.00126 * 21 6 5 23 23 H 1.09001 * 109.47367 * 180.02562 * 1 2 3 24 24 H 1.09004 * 109.47108 * 300.00256 * 1 2 3 25 25 H 1.09000 * 109.46870 * 60.00150 * 1 2 3 26 26 H 1.09004 * 109.46832 * 299.99880 * 4 2 1 27 27 H 1.09001 * 109.47420 * 59.99442 * 4 2 1 28 28 H 1.08992 * 109.47346 * 180.02562 * 5 4 2 29 29 H 1.09001 * 109.47364 * 59.99212 * 5 4 2 30 30 H 0.97006 * 119.99584 * 264.99701 * 8 6 5 31 31 H 1.07992 * 120.06575 * 0.02562 * 12 11 9 32 32 H 1.09001 * 109.47129 * 255.23476 * 14 13 12 33 33 H 0.96701 * 113.99705 * 60.00741 * 15 14 13 34 34 H 1.48502 * 110.00367 * 180.02562 * 16 14 13 35 35 H 1.48503 * 110.00038 * 301.31744 * 16 14 13 36 36 H 1.08008 * 119.93819 * 180.02562 * 19 17 13 37 37 H 1.08000 * 120.06090 * 180.02562 * 20 19 17 38 38 H 1.09001 * 109.46832 * 59.99801 * 21 6 5 39 39 H 1.08996 * 109.46952 * 179.97438 * 21 6 5 40 40 H 1.09004 * 109.47552 * 179.97438 * 22 21 6 41 41 H 1.09001 * 109.46997 * 299.99574 * 22 21 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7213 1.2493 5 6 3.5700 -0.7208 1.2497 6 6 4.0804 -1.4417 0.0004 7 1 3.7174 -2.4695 0.0003 8 7 5.5455 -1.4418 0.0010 9 6 6.2191 -2.3981 0.6705 10 8 5.6109 -3.2609 1.2736 11 6 7.6963 -2.3984 0.6706 12 6 8.3966 -3.3847 1.3682 13 6 9.7751 -3.3829 1.3615 14 6 10.5324 -4.4496 2.1095 15 8 9.6467 -5.5225 2.4356 16 14 11.9186 -5.0909 1.0429 17 6 10.4661 -2.3985 0.6717 18 9 11.8172 -2.3987 0.6722 19 6 9.7755 -1.4137 -0.0184 20 6 8.3974 -1.4090 -0.0222 21 6 3.5705 -0.7206 -1.2489 22 6 2.0405 -0.7210 -1.2492 23 1 -0.3634 -1.0277 0.0005 24 1 -0.3633 0.5139 0.8900 25 1 -0.3633 0.5138 -0.8900 26 1 1.6767 -0.2074 2.1393 27 1 1.6766 -1.7489 1.2494 28 1 3.9333 -1.2350 2.1394 29 1 3.9330 0.3070 1.2498 30 1 6.0307 -0.7535 -0.4805 31 1 7.8593 -4.1497 1.9089 32 1 10.9447 -4.0275 3.0261 33 1 9.2422 -5.9462 1.6663 34 1 12.6728 -6.1441 1.7690 35 1 11.3722 -5.6403 -0.2240 36 1 10.3187 -0.6495 -0.5545 37 1 7.8606 -0.6417 -0.5603 38 1 3.9335 0.3072 -1.2487 39 1 3.9345 -1.2340 -2.1388 40 1 1.6771 -0.2068 -2.1390 41 1 1.6775 -1.7488 -1.2494 There are 54 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 54 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_4279154_12496548.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 19:44:39 Heat of formation + Delta-G solvation = -99.045573 kcal Electronic energy + Delta-G solvation = -23604.952031 eV Core-core repulsion = 19979.010687 eV Total energy + Delta-G solvation = -3625.941345 eV No. of doubly occupied orbitals = 54 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 294.142 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -50.28268 -41.58505 -40.20143 -39.14228 -37.82746 -35.83241 -33.18571 -32.29089 -31.77177 -31.42903 -27.44164 -26.80175 -24.77784 -23.75748 -23.25679 -22.24517 -21.51316 -20.73523 -19.35561 -18.58777 -18.13437 -17.84330 -17.05393 -16.99242 -16.37428 -16.17764 -15.86313 -15.66135 -15.22711 -15.21506 -15.15339 -15.06062 -14.39139 -14.26393 -14.21132 -13.97564 -13.63761 -13.40259 -13.22558 -13.14115 -12.87926 -12.55074 -12.47736 -12.11013 -11.99849 -11.92107 -11.71342 -11.33667 -11.19729 -11.10818 -10.96692 -10.23647 -10.03431 -9.74905 -4.85632 -0.50860 0.00829 1.15478 1.49427 1.59962 1.85177 1.99614 2.57505 2.94405 3.14297 3.31281 3.55018 3.64495 3.68404 3.72494 3.90910 3.97777 4.09501 4.10369 4.17703 4.38235 4.40526 4.43327 4.52467 4.56189 4.58870 4.76251 4.78211 4.79605 4.88841 4.94647 4.97934 5.01740 5.07069 5.09894 5.13724 5.17964 5.22573 5.33264 5.40093 5.44180 5.55683 5.61720 6.30831 6.42908 7.09581 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.090 4.090 3 H 0.079 0.921 4 C -0.112 4.112 5 C -0.124 4.124 6 C 0.146 3.854 7 H 0.063 0.937 8 N -0.706 5.706 9 C 0.557 3.443 10 O -0.580 6.580 11 C -0.154 4.154 12 C -0.040 4.040 13 C -0.163 4.163 14 C -0.081 4.081 15 O -0.546 6.546 16 Si 0.748 3.252 17 C 0.119 3.881 18 F -0.100 7.100 19 C -0.141 4.141 20 C -0.047 4.047 21 C -0.118 4.118 22 C -0.112 4.112 23 H 0.049 0.951 24 H 0.054 0.946 25 H 0.061 0.939 26 H 0.066 0.934 27 H 0.052 0.948 28 H 0.041 0.959 29 H 0.078 0.922 30 H 0.416 0.584 31 H 0.133 0.867 32 H 0.133 0.867 33 H 0.387 0.613 34 H -0.290 1.290 35 H -0.285 1.285 36 H 0.182 0.818 37 H 0.175 0.825 38 H 0.088 0.912 39 H 0.077 0.923 40 H 0.080 0.920 41 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.921 7.786 -5.449 9.548 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.109 4.109 3 H 0.098 0.902 4 C -0.150 4.150 5 C -0.163 4.163 6 C 0.042 3.958 7 H 0.081 0.919 8 N -0.358 5.358 9 C 0.345 3.655 10 O -0.461 6.461 11 C -0.157 4.157 12 C -0.059 4.059 13 C -0.165 4.165 14 C -0.189 4.189 15 O -0.353 6.353 16 Si 0.651 3.349 17 C 0.099 3.901 18 F -0.078 7.078 19 C -0.159 4.159 20 C -0.065 4.065 21 C -0.156 4.156 22 C -0.150 4.150 23 H 0.068 0.932 24 H 0.073 0.927 25 H 0.080 0.920 26 H 0.084 0.916 27 H 0.071 0.929 28 H 0.060 0.940 29 H 0.097 0.903 30 H 0.255 0.745 31 H 0.150 0.850 32 H 0.151 0.849 33 H 0.236 0.764 34 H -0.217 1.217 35 H -0.211 1.211 36 H 0.199 0.801 37 H 0.192 0.808 38 H 0.107 0.893 39 H 0.095 0.905 40 H 0.098 0.902 41 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges 1.030 6.668 -4.841 8.304 hybrid contribution -0.780 -0.873 0.197 1.187 sum 0.251 5.795 -4.644 7.430 Atomic orbital electron populations 1.21840 0.95101 1.01722 1.02072 1.21158 0.95621 0.99878 0.94218 0.90244 1.21553 0.94236 1.00608 0.98590 1.21858 0.96325 1.01036 0.97072 1.21024 0.78505 1.00028 0.96288 0.91915 1.45876 1.07450 1.29962 1.52481 1.18455 0.87557 0.81126 0.78334 1.90794 1.70701 1.39280 1.45310 1.19977 0.92418 0.99497 1.03856 1.20868 0.92360 0.97387 0.95310 1.20313 0.94656 0.99159 1.02344 1.25094 0.99339 0.87671 1.06815 1.86572 1.62541 1.48865 1.37362 0.94107 0.81087 0.84291 0.75412 1.17802 0.77065 0.96627 0.98567 1.91200 1.28308 1.93531 1.94781 1.21467 0.94619 0.99184 1.00630 1.21533 0.93685 0.96265 0.95006 1.21770 0.96350 1.01666 0.95817 1.21557 0.94304 1.00862 0.98244 0.93164 0.92703 0.91991 0.91562 0.92900 0.94017 0.90313 0.74524 0.84967 0.84917 0.76382 1.21748 1.21073 0.80093 0.80812 0.89328 0.90465 0.90166 0.92519 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 0.39 9.19 71.98 0.66 1.05 16 2 C -0.09 0.29 2.72 -10.79 -0.03 0.26 16 3 H 0.08 -0.35 8.14 -2.39 -0.02 -0.37 16 4 C -0.11 0.03 5.20 30.59 0.16 0.19 16 5 C -0.12 -0.06 5.50 30.59 0.17 0.11 16 6 C 0.15 -0.08 2.45 44.99 0.11 0.04 16 7 H 0.06 0.34 7.57 -2.39 -0.02 0.33 16 8 N -0.71 1.56 5.03 -445.50 -2.24 -0.68 16 9 C 0.56 2.74 7.73 86.75 0.67 3.41 16 10 O -0.58 -8.45 16.00 -3.93 -0.06 -8.51 16 11 C -0.15 -0.15 5.87 -20.09 -0.12 -0.27 16 12 C -0.04 -0.15 8.78 22.52 0.20 0.04 16 13 C -0.16 -0.19 5.13 -19.86 -0.10 -0.29 16 14 C -0.08 -0.15 2.96 71.23 0.21 0.06 16 15 O -0.55 -2.88 11.64 -148.98 -1.73 -4.61 16 16 Si 0.75 1.03 29.57 68.60 2.03 3.06 16 17 C 0.12 -0.30 6.67 22.47 0.15 -0.15 16 18 F -0.10 0.37 13.70 44.97 0.62 0.99 16 19 C -0.14 1.00 10.01 22.27 0.22 1.22 16 20 C -0.05 0.32 9.54 22.51 0.21 0.53 16 21 C -0.12 0.69 5.39 30.59 0.16 0.85 16 22 C -0.11 0.48 5.20 30.59 0.16 0.64 16 23 H 0.05 -0.07 8.14 -2.39 -0.02 -0.09 16 24 H 0.05 -0.12 8.14 -2.38 -0.02 -0.14 16 25 H 0.06 -0.22 8.14 -2.39 -0.02 -0.24 16 26 H 0.07 -0.02 8.14 -2.38 -0.02 -0.04 16 27 H 0.05 0.12 8.14 -2.39 -0.02 0.10 16 28 H 0.04 0.26 8.14 -2.39 -0.02 0.24 16 29 H 0.08 -0.19 8.14 -2.39 -0.02 -0.20 16 30 H 0.42 -4.06 6.63 -92.70 -0.61 -4.68 16 31 H 0.13 0.99 6.67 -2.91 -0.02 0.97 16 32 H 0.13 0.02 7.96 -2.39 -0.02 0.00 16 33 H 0.39 0.05 8.44 -74.06 -0.62 -0.58 16 34 H -0.29 -2.32 7.11 99.48 0.71 -1.61 16 35 H -0.28 -1.69 7.11 99.48 0.71 -0.98 16 36 H 0.18 -2.41 8.06 -2.91 -0.02 -2.43 16 37 H 0.17 -2.54 6.40 -2.91 -0.02 -2.56 16 38 H 0.09 -0.80 8.14 -2.39 -0.02 -0.82 16 39 H 0.08 -0.50 8.14 -2.39 -0.02 -0.52 16 40 H 0.08 -0.48 8.14 -2.39 -0.02 -0.49 16 41 H 0.06 -0.11 8.14 -2.39 -0.02 -0.13 16 Total: 0.00 -17.62 331.96 1.29 -16.33 By element: Atomic # 1 Polarization: -14.12 SS G_CDS: -0.16 Total: -14.27 kcal Atomic # 6 Polarization: 4.85 SS G_CDS: 2.84 Total: 7.69 kcal Atomic # 7 Polarization: 1.56 SS G_CDS: -2.24 Total: -0.68 kcal Atomic # 8 Polarization: -11.33 SS G_CDS: -1.80 Total: -13.12 kcal Atomic # 9 Polarization: 0.37 SS G_CDS: 0.62 Total: 0.99 kcal Atomic # 14 Polarization: 1.03 SS G_CDS: 2.03 Total: 3.06 kcal Total: -17.62 1.29 -16.33 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_4279154_12496548.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -82.716 kcal (2) G-P(sol) polarization free energy of solvation -17.622 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -100.338 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.292 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -16.330 kcal (6) G-S(sol) free energy of system = (1) + (5) -99.046 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds