Wall clock time and date at job start Sun Mar 7 2021 19:44:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09005 * 109.47015 * 2 1 4 4 C 1.52998 * 109.47441 * 119.99350 * 2 1 3 5 5 C 1.53000 * 109.47741 * 180.02562 * 4 2 1 6 6 C 1.53006 * 109.46940 * 300.00509 * 5 4 2 7 7 H 1.08994 * 109.46712 * 299.99751 * 6 5 4 8 8 N 1.46497 * 109.46727 * 179.97438 * 6 5 4 9 9 C 1.34776 * 119.99808 * 85.00448 * 8 6 5 10 10 O 1.21280 * 120.00296 * 359.97438 * 9 8 6 11 11 C 1.50705 * 119.99667 * 179.97438 * 9 8 6 12 12 N 1.46504 * 109.46764 * 179.97438 * 11 9 8 13 13 C 1.35036 * 125.92695 * 124.97693 * 12 11 9 14 14 C 1.35087 * 107.97460 * 179.74752 * 13 12 11 15 15 C 1.50708 * 126.07627 * 180.23693 * 14 13 12 16 16 O 1.42897 * 109.47047 * 104.01258 * 15 14 13 17 17 Si 1.86305 * 109.46917 * 344.01726 * 15 14 13 18 18 C 1.40839 * 107.85391 * 0.39258 * 14 13 12 19 19 C 1.48420 * 126.04179 * 179.86066 * 18 14 13 20 20 C 1.39329 * 120.11749 * 43.40563 * 19 18 14 21 21 C 1.38017 * 119.87776 * 180.29691 * 20 19 18 22 22 C 1.38317 * 120.12079 * 359.42064 * 21 20 19 23 23 C 1.38324 * 120.24152 * 0.60379 * 22 21 20 24 24 C 1.38022 * 120.11517 * 359.67415 * 23 22 21 25 25 N 1.31624 * 107.91920 * 359.60415 * 18 14 13 26 26 C 1.52996 * 109.46867 * 59.99512 * 6 5 4 27 27 C 1.52997 * 109.47419 * 239.99728 * 2 1 3 28 28 H 1.09000 * 109.46507 * 180.02562 * 1 2 3 29 29 H 1.08999 * 109.47247 * 300.00338 * 1 2 3 30 30 H 1.08997 * 109.46922 * 60.00981 * 1 2 3 31 31 H 1.09003 * 109.46916 * 300.00814 * 4 2 1 32 32 H 1.09004 * 109.46941 * 60.00057 * 4 2 1 33 33 H 1.08989 * 109.47333 * 180.02562 * 5 4 2 34 34 H 1.09000 * 109.46551 * 59.99919 * 5 4 2 35 35 H 0.97001 * 120.00009 * 264.99364 * 8 6 5 36 36 H 1.09000 * 109.47238 * 59.99811 * 11 9 8 37 37 H 1.08999 * 109.47163 * 299.99330 * 11 9 8 38 38 H 1.07995 * 126.01484 * 359.97438 * 13 12 11 39 39 H 1.08994 * 109.47486 * 224.01525 * 15 14 13 40 40 H 0.96705 * 113.99870 * 180.02562 * 16 15 14 41 41 H 1.48502 * 109.99945 * 298.68065 * 17 15 14 42 42 H 1.48505 * 110.00126 * 59.99501 * 17 15 14 43 43 H 1.08004 * 120.05654 * 0.02562 * 20 19 18 44 44 H 1.08001 * 119.93782 * 179.71995 * 21 20 19 45 45 H 1.07998 * 119.88018 * 180.27496 * 22 21 20 46 46 H 1.07997 * 119.94080 * 179.70185 * 23 22 21 47 47 H 1.08005 * 120.05595 * 180.02562 * 24 23 22 48 48 H 1.09004 * 109.47395 * 60.00455 * 26 6 5 49 49 H 1.09011 * 109.46739 * 179.97438 * 26 6 5 50 50 H 1.08995 * 109.47018 * 60.00130 * 27 2 1 51 51 H 1.08991 * 109.47048 * 299.99585 * 27 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0401 -0.7211 1.2493 5 6 3.5701 -0.7206 1.2497 6 6 4.0806 -1.4415 0.0004 7 1 3.7176 -2.4692 0.0003 8 7 5.5456 -1.4405 0.0005 9 6 6.2201 -2.3961 0.6700 10 8 5.6142 -3.2567 1.2728 11 6 7.7271 -2.3954 0.6696 12 7 8.2162 -3.5261 1.4625 13 6 9.0716 -4.4806 1.0376 14 6 9.2799 -5.3387 2.0599 15 6 10.1710 -6.5538 2.0310 16 8 11.3808 -6.2742 2.7382 17 14 10.5709 -6.9888 0.2641 18 6 8.5137 -4.8982 3.1564 19 6 8.4411 -5.5485 4.4886 20 6 9.6018 -6.0115 5.1047 21 6 9.5279 -6.6210 6.3408 22 6 8.3059 -6.7617 6.9733 23 6 7.1503 -6.3043 6.3660 24 6 7.2121 -5.6984 5.1274 25 7 7.8777 -3.8047 2.7928 26 6 3.5705 -0.7203 -1.2488 27 6 2.0401 -0.7213 -1.2492 28 1 -0.3632 -1.0277 0.0005 29 1 -0.3634 0.5139 0.8899 30 1 -0.3633 0.5137 -0.8901 31 1 1.6766 -0.2072 2.1392 32 1 1.6767 -1.7488 1.2494 33 1 3.9333 -1.2346 2.1394 34 1 3.9329 0.3073 1.2498 35 1 6.0301 -0.7520 -0.4814 36 1 8.0901 -1.4637 1.1037 37 1 8.0902 -2.4850 -0.3542 38 1 9.5145 -4.5445 0.0547 39 1 9.6587 -7.3914 2.5044 40 1 12.0035 -7.0138 2.7600 41 1 9.3237 -7.3127 -0.4740 42 1 11.2696 -5.8548 -0.3925 43 1 10.5571 -5.8977 4.6138 44 1 10.4264 -6.9844 6.8172 45 1 8.2530 -7.2353 7.9425 46 1 6.1982 -6.4210 6.8621 47 1 6.3093 -5.3412 4.6543 48 1 3.9335 0.3075 -1.2487 49 1 3.9347 -1.2337 -2.1388 50 1 1.6768 -0.2075 -2.1391 51 1 1.6768 -1.7489 -1.2491 There are 66 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 66 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_4279154_12622748.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 19:44:42 Heat of formation + Delta-G solvation = 29.642909 kcal Electronic energy + Delta-G solvation = -31560.853108 eV Core-core repulsion = 27427.802990 eV Total energy + Delta-G solvation = -4133.050118 eV No. of doubly occupied orbitals = 66 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 356.189 amu Computer time = 1.37 seconds Orbital eigenvalues (eV) -42.63586 -41.18792 -39.86527 -39.37207 -37.62870 -35.84507 -34.93928 -32.70747 -32.26896 -31.84912 -31.81533 -31.45824 -28.98044 -26.86556 -25.82790 -24.25128 -23.83635 -23.49196 -22.45672 -21.81743 -21.66863 -21.04543 -20.65594 -18.61321 -18.50637 -18.23175 -17.73052 -17.05519 -16.87319 -16.32223 -16.06073 -15.88122 -15.69482 -15.44257 -15.29037 -15.26944 -15.14373 -14.91931 -14.73204 -14.40154 -14.37050 -14.12071 -13.92242 -13.72340 -13.67334 -13.46318 -13.30684 -13.21408 -12.66831 -12.60288 -12.29710 -12.19635 -12.15383 -12.02323 -11.89429 -11.84365 -11.71028 -11.40634 -11.26296 -11.17487 -10.73141 -10.22724 -10.15293 -9.91562 -9.86707 -9.42883 -4.92864 0.04613 0.45395 0.63739 1.12907 1.34700 1.36587 1.52417 1.73843 1.96210 2.00613 2.84225 3.20228 3.43460 3.44370 3.58157 3.63921 3.72434 3.77596 3.85414 3.95403 4.00169 4.01690 4.04175 4.09927 4.11954 4.25741 4.30738 4.32540 4.35421 4.44484 4.47830 4.48538 4.57418 4.69220 4.70974 4.71929 4.79210 4.88203 4.92058 4.94889 5.00534 5.04590 5.09863 5.14252 5.14944 5.23272 5.26863 5.32367 5.37399 5.48347 5.54921 5.58915 5.59444 5.71272 6.03794 6.35325 6.43487 7.02896 7.04904 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.090 4.090 3 H 0.080 0.920 4 C -0.111 4.111 5 C -0.123 4.123 6 C 0.150 3.850 7 H 0.057 0.943 8 N -0.708 5.708 9 C 0.496 3.504 10 O -0.564 6.564 11 C 0.108 3.892 12 N -0.360 5.360 13 C 0.055 3.945 14 C -0.226 4.226 15 C -0.041 4.041 16 O -0.558 6.558 17 Si 0.787 3.213 18 C 0.112 3.888 19 C -0.040 4.040 20 C -0.098 4.098 21 C -0.122 4.122 22 C -0.112 4.112 23 C -0.131 4.131 24 C -0.113 4.113 25 N -0.290 5.290 26 C -0.116 4.116 27 C -0.112 4.112 28 H 0.049 0.951 29 H 0.054 0.946 30 H 0.063 0.937 31 H 0.065 0.935 32 H 0.050 0.950 33 H 0.035 0.965 34 H 0.078 0.922 35 H 0.421 0.579 36 H 0.143 0.857 37 H 0.172 0.828 38 H 0.199 0.801 39 H 0.070 0.930 40 H 0.401 0.599 41 H -0.301 1.301 42 H -0.274 1.274 43 H 0.152 0.848 44 H 0.154 0.846 45 H 0.150 0.850 46 H 0.138 0.862 47 H 0.102 0.898 48 H 0.088 0.912 49 H 0.077 0.923 50 H 0.082 0.918 51 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.172 1.013 -5.367 6.873 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.108 4.108 3 H 0.098 0.902 4 C -0.150 4.150 5 C -0.162 4.162 6 C 0.045 3.955 7 H 0.075 0.925 8 N -0.361 5.361 9 C 0.281 3.719 10 O -0.442 6.442 11 C -0.015 4.015 12 N -0.142 5.142 13 C -0.090 4.090 14 C -0.237 4.237 15 C -0.151 4.151 16 O -0.368 6.368 17 Si 0.691 3.309 18 C -0.053 4.053 19 C -0.042 4.042 20 C -0.117 4.117 21 C -0.140 4.140 22 C -0.130 4.130 23 C -0.149 4.149 24 C -0.133 4.133 25 N -0.112 5.112 26 C -0.154 4.154 27 C -0.150 4.150 28 H 0.068 0.932 29 H 0.073 0.927 30 H 0.082 0.918 31 H 0.083 0.917 32 H 0.068 0.932 33 H 0.053 0.947 34 H 0.096 0.904 35 H 0.259 0.741 36 H 0.161 0.839 37 H 0.190 0.810 38 H 0.216 0.784 39 H 0.088 0.912 40 H 0.252 0.748 41 H -0.229 1.229 42 H -0.200 1.200 43 H 0.169 0.831 44 H 0.171 0.829 45 H 0.168 0.832 46 H 0.156 0.844 47 H 0.120 0.880 48 H 0.107 0.893 49 H 0.096 0.904 50 H 0.100 0.900 51 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges 2.477 2.258 -5.474 6.418 hybrid contribution -0.279 0.023 0.081 0.291 sum 2.198 2.281 -5.392 6.254 Atomic orbital electron populations 1.21838 0.94969 1.01726 1.02172 1.21153 0.95741 0.99839 0.94074 0.90197 1.21547 0.94210 1.00475 0.98725 1.21836 0.96385 1.00926 0.97016 1.20942 0.78804 0.99597 0.96161 0.92516 1.45862 1.07290 1.30166 1.52816 1.21004 0.90556 0.81607 0.78748 1.90806 1.70627 1.39019 1.43720 1.22002 0.91237 0.89335 0.98972 1.48119 1.35252 1.21755 1.09038 1.22616 0.95524 0.90013 1.00840 1.19897 1.07513 1.02689 0.93608 1.24148 0.86468 0.94207 1.10274 1.86407 1.28616 1.44500 1.77287 0.94084 0.81205 0.84531 0.71073 1.21004 0.95748 0.93712 0.94850 1.18002 0.94754 1.00516 0.90902 1.21763 0.98216 0.96244 0.95426 1.21477 0.99035 0.98854 0.94601 1.21630 0.92173 0.98513 1.00726 1.21317 1.00103 0.98843 0.94596 1.21226 0.96536 0.99412 0.96120 1.77698 1.22315 1.17806 0.93361 1.21768 0.96308 1.01640 0.95700 1.21566 0.94347 1.00784 0.98274 0.93210 0.92683 0.91797 0.91663 0.93166 0.94655 0.90355 0.74124 0.83925 0.81043 0.78432 0.91208 0.74801 1.22907 1.20031 0.83051 0.82851 0.83226 0.84374 0.88011 0.89313 0.90385 0.89977 0.92664 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 0.20 9.19 71.98 0.66 0.86 16 2 C -0.09 0.15 2.72 -10.80 -0.03 0.12 16 3 H 0.08 -0.24 8.14 -2.38 -0.02 -0.26 16 4 C -0.11 -0.22 5.20 30.59 0.16 -0.06 16 5 C -0.12 -0.35 5.50 30.60 0.17 -0.18 16 6 C 0.15 0.16 2.45 44.99 0.11 0.27 16 7 H 0.06 0.45 7.58 -2.39 -0.02 0.43 16 8 N -0.71 1.40 5.08 -442.54 -2.25 -0.85 16 9 C 0.50 2.60 7.82 87.66 0.69 3.28 16 10 O -0.56 -9.93 15.37 -3.03 -0.05 -9.98 16 11 C 0.11 -0.12 6.99 85.63 0.60 0.48 16 12 N -0.36 -3.29 3.40 -351.90 -1.20 -4.49 16 13 C 0.06 0.39 9.96 83.47 0.83 1.23 16 14 C -0.23 -2.27 5.38 -19.95 -0.11 -2.38 16 15 C -0.04 -0.10 2.16 71.24 0.15 0.05 16 16 O -0.56 -0.02 10.40 -148.98 -1.55 -1.56 16 17 Si 0.79 -1.72 30.81 68.60 2.11 0.39 16 18 C 0.11 1.72 6.66 42.53 0.28 2.00 16 19 C -0.04 -0.53 5.74 -20.04 -0.11 -0.65 16 20 C -0.10 -0.80 9.04 22.48 0.20 -0.60 16 21 C -0.12 -0.49 10.03 22.24 0.22 -0.26 16 22 C -0.11 -0.46 10.04 22.31 0.22 -0.23 16 23 C -0.13 -1.01 10.03 22.24 0.22 -0.79 16 24 C -0.11 -1.51 9.78 22.48 0.22 -1.29 16 25 N -0.29 -4.98 11.67 -48.16 -0.56 -5.54 16 26 C -0.12 0.54 5.39 30.61 0.17 0.70 16 27 C -0.11 0.33 5.21 30.61 0.16 0.49 16 28 H 0.05 0.00 8.14 -2.39 -0.02 -0.02 16 29 H 0.05 -0.05 8.14 -2.39 -0.02 -0.07 16 30 H 0.06 -0.17 8.14 -2.39 -0.02 -0.19 16 31 H 0.06 0.13 8.14 -2.39 -0.02 0.11 16 32 H 0.05 0.24 8.14 -2.39 -0.02 0.22 16 33 H 0.03 0.34 8.14 -2.39 -0.02 0.32 16 34 H 0.08 0.00 8.14 -2.39 -0.02 -0.02 16 35 H 0.42 -4.32 8.60 -92.71 -0.80 -5.11 16 36 H 0.14 -0.85 8.14 -2.39 -0.02 -0.87 16 37 H 0.17 -1.87 8.07 -2.39 -0.02 -1.89 16 38 H 0.20 0.02 6.37 -2.91 -0.02 0.00 16 39 H 0.07 0.15 7.96 -2.39 -0.02 0.14 16 40 H 0.40 -4.34 8.74 -74.05 -0.65 -4.99 16 41 H -0.30 -1.53 7.11 99.48 0.71 -0.82 16 42 H -0.27 -0.30 7.02 99.48 0.70 0.40 16 43 H 0.15 1.02 5.34 -2.91 -0.02 1.00 16 44 H 0.15 -0.31 8.06 -2.91 -0.02 -0.34 16 45 H 0.15 -0.25 8.06 -2.91 -0.02 -0.27 16 46 H 0.14 0.51 8.06 -2.91 -0.02 0.49 16 47 H 0.10 1.66 8.06 -2.91 -0.02 1.64 16 48 H 0.09 -0.69 8.14 -2.39 -0.02 -0.71 16 49 H 0.08 -0.44 8.14 -2.38 -0.02 -0.46 16 50 H 0.08 -0.40 8.14 -2.39 -0.02 -0.42 16 51 H 0.05 -0.03 8.14 -2.39 -0.02 -0.05 16 Total: 0.00 -31.58 410.90 0.86 -30.72 By element: Atomic # 1 Polarization: -11.26 SS G_CDS: -0.48 Total: -11.74 kcal Atomic # 6 Polarization: -1.78 SS G_CDS: 4.82 Total: 3.04 kcal Atomic # 7 Polarization: -6.87 SS G_CDS: -4.01 Total: -10.87 kcal Atomic # 8 Polarization: -9.95 SS G_CDS: -1.60 Total: -11.54 kcal Atomic # 14 Polarization: -1.72 SS G_CDS: 2.11 Total: 0.39 kcal Total: -31.58 0.86 -30.72 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_4279154_12622748.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 60.363 kcal (2) G-P(sol) polarization free energy of solvation -31.575 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 28.788 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.855 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -30.720 kcal (6) G-S(sol) free energy of system = (1) + (5) 29.643 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.37 seconds