Wall clock time and date at job start Sun Mar 7 2021 19:45:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.08998 * 109.47430 * 2 1 4 4 C 1.52997 * 109.47175 * 120.00563 * 2 1 3 5 5 C 1.52996 * 109.47207 * 180.02562 * 4 2 1 6 6 C 1.53001 * 109.46691 * 299.99309 * 5 4 2 7 7 H 1.08998 * 109.47538 * 299.99881 * 6 5 4 8 8 N 1.46504 * 109.46841 * 180.02562 * 6 5 4 9 9 C 1.34783 * 119.99873 * 155.00640 * 8 6 5 10 10 O 1.21278 * 119.99968 * 359.97438 * 9 8 6 11 11 C 1.50694 * 120.00083 * 180.02562 * 9 8 6 12 12 C 1.50692 * 109.47320 * 185.26878 * 11 9 8 13 13 C 1.39316 * 120.06781 * 83.28955 * 12 11 9 14 14 C 1.48395 * 120.11431 * 359.97438 * 13 12 11 15 15 C 1.39334 * 120.12204 * 236.05010 * 14 13 12 16 16 C 1.38015 * 119.88169 * 179.97438 * 15 14 13 17 17 C 1.38327 * 120.11989 * 0.02562 * 16 15 14 18 18 C 1.50698 * 119.88106 * 179.97438 * 17 16 15 19 19 O 1.42902 * 109.46815 * 64.99574 * 18 17 16 20 20 Si 1.86295 * 109.47349 * 184.99772 * 18 17 16 21 21 C 1.38316 * 120.24046 * 0.24831 * 17 16 15 22 22 C 1.38019 * 120.12569 * 359.49604 * 21 17 16 23 23 C 1.39353 * 119.76352 * 179.70416 * 13 12 11 24 24 C 1.37993 * 119.87826 * 0.27742 * 23 13 12 25 25 C 1.38348 * 120.12093 * 359.97438 * 24 23 13 26 26 C 1.38046 * 120.06081 * 263.52834 * 12 11 9 27 27 C 1.52997 * 109.47256 * 60.00325 * 6 5 4 28 28 C 1.53001 * 109.46958 * 300.00001 * 27 6 5 29 29 H 1.08997 * 109.47012 * 300.00261 * 1 2 3 30 30 H 1.09000 * 109.46605 * 59.99517 * 1 2 3 31 31 H 1.08998 * 109.47430 * 180.02562 * 1 2 3 32 32 H 1.08998 * 109.47401 * 59.99420 * 4 2 1 33 33 H 1.09001 * 109.46940 * 299.99653 * 4 2 1 34 34 H 1.09002 * 109.47107 * 180.02562 * 5 4 2 35 35 H 1.08998 * 109.47539 * 59.99351 * 5 4 2 36 36 H 0.96995 * 119.99972 * 334.99439 * 8 6 5 37 37 H 1.09003 * 109.47282 * 65.26023 * 11 9 8 38 38 H 1.09007 * 109.46836 * 305.26760 * 11 9 8 39 39 H 1.08001 * 120.05892 * 0.02562 * 15 14 13 40 40 H 1.07998 * 119.94234 * 180.02562 * 16 15 14 41 41 H 1.08999 * 109.46707 * 305.00247 * 18 17 16 42 42 H 0.96702 * 113.99765 * 179.97438 * 19 18 17 43 43 H 1.48507 * 109.99778 * 300.00104 * 20 18 17 44 44 H 1.48503 * 110.00035 * 61.31875 * 20 18 17 45 45 H 1.08000 * 119.93975 * 179.74850 * 21 17 16 46 46 H 1.07999 * 120.06601 * 180.27915 * 22 21 17 47 47 H 1.08000 * 120.06167 * 180.29039 * 23 13 12 48 48 H 1.07997 * 119.94366 * 179.97438 * 24 23 13 49 49 H 1.08000 * 119.88119 * 180.02562 * 25 24 23 50 50 H 1.08004 * 119.94070 * 0.03496 * 26 12 11 51 51 H 1.09007 * 109.46825 * 59.99810 * 27 6 5 52 52 H 1.09001 * 109.47465 * 179.97438 * 27 6 5 53 53 H 1.08998 * 109.47139 * 299.99857 * 28 27 6 54 54 H 1.09003 * 109.47247 * 179.97438 * 28 27 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0401 -0.7214 1.2491 5 6 3.5700 -0.7208 1.2495 6 6 4.0804 -1.4417 0.0002 7 1 3.7175 -2.4695 0.0000 8 7 5.5455 -1.4418 0.0008 9 6 6.2196 -2.3977 -0.6688 10 8 5.6134 -3.2580 -1.2714 11 6 7.7266 -2.3981 -0.6678 12 6 8.2293 -3.4817 -1.5864 13 6 8.3302 -3.2449 -2.9556 14 6 7.9425 -1.9256 -3.5135 15 6 6.9823 -1.8469 -4.5200 16 6 6.6251 -0.6172 -5.0350 17 6 7.2190 0.5358 -4.5540 18 6 6.8254 1.8756 -5.1206 19 8 5.4569 2.1419 -4.8069 20 14 7.9020 3.2035 -4.3803 21 6 8.1769 0.4630 -3.5589 22 6 8.5379 -0.7609 -3.0330 23 6 8.8017 -4.2494 -3.7985 24 6 9.1606 -5.4744 -3.2743 25 6 9.0535 -5.7060 -1.9146 26 6 8.5861 -4.7126 -1.0734 27 6 3.5705 -0.7205 -1.2490 28 6 2.0405 -0.7209 -1.2493 29 1 -0.3633 0.5139 0.8899 30 1 -0.3632 0.5139 -0.8900 31 1 -0.3634 -1.0276 0.0005 32 1 1.6767 -1.7490 1.2491 33 1 1.6768 -0.2075 2.1392 34 1 3.9333 -1.2351 2.1392 35 1 3.9330 0.3069 1.2497 36 1 6.0303 -0.7538 0.4829 37 1 8.0892 -2.5818 0.3436 38 1 8.0904 -1.4306 -1.0139 39 1 6.5177 -2.7464 -4.8960 40 1 5.8806 -0.5550 -5.8149 41 1 6.9545 1.8645 -6.2029 42 1 5.1347 2.9902 -5.1411 43 1 7.7350 3.2289 -2.9048 44 1 9.3247 2.9555 -4.7261 45 1 8.6404 1.3660 -3.1898 46 1 9.2827 -0.8162 -2.2529 47 1 8.8863 -4.0694 -4.8600 48 1 9.5258 -6.2538 -3.9266 49 1 9.3359 -6.6661 -1.5084 50 1 8.5041 -4.8989 -0.0128 51 1 3.9336 0.3073 -1.2487 52 1 3.9345 -1.2338 -2.1390 53 1 1.6775 -1.7487 -1.2495 54 1 1.6771 -0.2067 -2.1390 There are 68 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 68 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_4279154_13158394.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 19:45:03 Heat of formation + Delta-G solvation = -28.793356 kcal Electronic energy + Delta-G solvation = -34173.061747 eV Core-core repulsion = 30040.103324 eV Total energy + Delta-G solvation = -4132.958423 eV No. of doubly occupied orbitals = 68 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 366.198 amu Computer time = 1.69 seconds Orbital eigenvalues (eV) -41.66100 -40.79269 -39.82156 -39.12046 -37.55828 -35.70112 -34.44196 -33.66311 -32.20591 -32.06324 -31.80847 -30.85943 -28.93348 -26.81565 -26.42207 -24.17241 -23.81154 -23.48995 -23.01995 -22.15016 -21.72361 -21.40398 -20.68858 -18.47075 -18.39058 -18.04439 -17.57663 -17.13975 -16.86424 -16.65195 -16.32048 -16.02627 -15.70712 -15.48585 -15.25827 -15.23416 -15.17688 -14.95401 -14.87534 -14.49790 -14.27963 -14.15024 -13.96173 -13.81112 -13.71223 -13.50531 -13.32667 -13.26251 -13.19939 -13.02709 -12.59367 -12.55286 -12.27334 -12.15356 -12.11007 -12.03019 -11.96694 -11.74275 -11.69289 -11.34210 -11.16844 -10.93377 -10.42271 -10.19351 -10.12288 -10.08811 -9.81189 -9.31787 -4.95347 -0.21939 0.18979 0.33689 0.51129 1.28062 1.59004 1.63170 1.93985 2.13373 2.46109 2.79612 3.35559 3.45422 3.57514 3.61090 3.68108 3.71372 3.75487 3.82377 3.84254 3.92901 3.99872 4.06272 4.10686 4.15287 4.20287 4.24714 4.33550 4.36376 4.39902 4.42612 4.44127 4.48632 4.50506 4.52585 4.61942 4.73534 4.74117 4.77000 4.83530 4.87473 4.92733 4.95933 5.02246 5.04915 5.10287 5.13072 5.18176 5.20014 5.27240 5.32229 5.33088 5.36404 5.44964 5.48258 5.50686 5.52884 5.55816 5.76806 5.97942 6.49741 6.87881 7.21841 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.089 4.089 3 H 0.075 0.925 4 C -0.110 4.110 5 C -0.118 4.118 6 C 0.149 3.851 7 H 0.061 0.939 8 N -0.719 5.719 9 C 0.516 3.484 10 O -0.573 6.573 11 C -0.112 4.112 12 C -0.063 4.063 13 C -0.054 4.054 14 C -0.040 4.040 15 C -0.110 4.110 16 C -0.095 4.095 17 C -0.087 4.087 18 C -0.083 4.083 19 O -0.563 6.563 20 Si 0.774 3.226 21 C -0.132 4.132 22 C -0.110 4.110 23 C -0.119 4.119 24 C -0.124 4.124 25 C -0.122 4.122 26 C -0.116 4.116 27 C -0.117 4.117 28 C -0.108 4.108 29 H 0.063 0.937 30 H 0.055 0.945 31 H 0.051 0.949 32 H 0.058 0.942 33 H 0.081 0.919 34 H 0.077 0.923 35 H 0.081 0.919 36 H 0.413 0.587 37 H 0.132 0.868 38 H 0.117 0.883 39 H 0.121 0.879 40 H 0.133 0.867 41 H 0.090 0.910 42 H 0.402 0.598 43 H -0.288 1.288 44 H -0.288 1.288 45 H 0.125 0.875 46 H 0.146 0.854 47 H 0.129 0.871 48 H 0.143 0.857 49 H 0.144 0.856 50 H 0.139 0.861 51 H 0.066 0.934 52 H 0.033 0.967 53 H 0.053 0.947 54 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.230 6.172 1.650 6.506 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.108 4.108 3 H 0.094 0.906 4 C -0.148 4.148 5 C -0.156 4.156 6 C 0.045 3.955 7 H 0.079 0.921 8 N -0.371 5.371 9 C 0.304 3.696 10 O -0.452 6.452 11 C -0.151 4.151 12 C -0.064 4.064 13 C -0.054 4.054 14 C -0.040 4.040 15 C -0.128 4.128 16 C -0.113 4.113 17 C -0.087 4.087 18 C -0.192 4.192 19 O -0.372 6.372 20 Si 0.679 3.321 21 C -0.149 4.149 22 C -0.128 4.128 23 C -0.137 4.137 24 C -0.142 4.142 25 C -0.140 4.140 26 C -0.134 4.134 27 C -0.155 4.155 28 C -0.146 4.146 29 H 0.082 0.918 30 H 0.074 0.926 31 H 0.070 0.930 32 H 0.077 0.923 33 H 0.099 0.901 34 H 0.095 0.905 35 H 0.099 0.901 36 H 0.249 0.751 37 H 0.150 0.850 38 H 0.135 0.865 39 H 0.139 0.861 40 H 0.151 0.849 41 H 0.108 0.892 42 H 0.253 0.747 43 H -0.216 1.216 44 H -0.216 1.216 45 H 0.142 0.858 46 H 0.164 0.836 47 H 0.146 0.854 48 H 0.160 0.840 49 H 0.161 0.839 50 H 0.157 0.843 51 H 0.085 0.915 52 H 0.052 0.948 53 H 0.071 0.929 54 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges 1.486 5.168 2.045 5.754 hybrid contribution 0.071 -0.671 -0.289 0.734 sum 1.558 4.498 1.755 5.073 Atomic orbital electron populations 1.21826 0.94724 1.01822 1.02164 1.21141 0.95876 0.99647 0.94109 0.90634 1.21551 0.94098 1.00930 0.98241 1.21760 0.96557 1.01297 0.95942 1.20919 0.79182 0.99584 0.95836 0.92106 1.46020 1.07233 1.30529 1.53294 1.20838 0.90438 0.80668 0.77701 1.90710 1.71165 1.39002 1.44319 1.20956 0.91145 1.00469 1.02500 1.19437 0.98959 0.95435 0.92544 1.18706 1.00429 0.93155 0.93086 1.18851 0.96615 0.92419 0.96149 1.21351 0.96959 0.98102 0.96404 1.21069 0.98882 0.91318 1.00000 1.19727 0.96975 0.95069 0.96888 1.24899 0.90751 0.99579 1.03962 1.86457 1.24722 1.44854 1.81214 0.94361 0.75472 0.84410 0.77866 1.20957 0.98874 0.97786 0.97280 1.21269 1.00226 0.90858 1.00408 1.21353 0.99278 0.93196 0.99823 1.21384 0.99758 0.97047 0.96025 1.21507 0.98873 0.99894 0.93711 1.21228 0.98810 0.92401 1.00977 1.21759 0.96447 1.00311 0.97029 1.21521 0.93983 1.00533 0.98600 0.91832 0.92628 0.93023 0.92336 0.90063 0.90478 0.90052 0.75070 0.84980 0.86520 0.86071 0.84891 0.89205 0.74672 1.21572 1.21554 0.85785 0.83629 0.85350 0.83955 0.83866 0.84332 0.91542 0.94814 0.92851 0.91812 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 0.10 9.19 71.98 0.66 0.76 16 2 C -0.09 0.01 2.72 -10.79 -0.03 -0.02 16 3 H 0.08 -0.06 8.14 -2.39 -0.02 -0.08 16 4 C -0.11 0.15 5.20 30.59 0.16 0.31 16 5 C -0.12 0.22 5.39 30.59 0.16 0.38 16 6 C 0.15 0.56 2.45 44.99 0.11 0.67 16 7 H 0.06 0.57 7.58 -2.39 -0.02 0.55 16 8 N -0.72 -1.60 5.08 -442.53 -2.25 -3.84 16 9 C 0.52 3.84 7.74 87.65 0.68 4.52 16 10 O -0.57 -9.68 15.71 -3.02 -0.05 -9.73 16 11 C -0.11 -0.21 5.32 29.10 0.15 -0.05 16 12 C -0.06 -0.40 4.38 -19.65 -0.09 -0.48 16 13 C -0.05 -0.43 5.40 -20.04 -0.11 -0.54 16 14 C -0.04 -0.31 4.89 -20.04 -0.10 -0.41 16 15 C -0.11 -0.98 9.62 22.48 0.22 -0.77 16 16 C -0.09 -0.71 9.67 22.24 0.21 -0.49 16 17 C -0.09 -0.53 5.39 -19.83 -0.11 -0.63 16 18 C -0.08 -0.02 2.79 71.24 0.20 0.18 16 19 O -0.56 -0.25 12.81 -148.98 -1.91 -2.16 16 20 Si 0.77 -1.76 29.83 68.60 2.05 0.29 16 21 C -0.13 -0.75 8.65 22.24 0.19 -0.55 16 22 C -0.11 -0.56 7.77 22.48 0.17 -0.39 16 23 C -0.12 -0.80 9.62 22.48 0.22 -0.58 16 24 C -0.12 -0.56 10.03 22.24 0.22 -0.33 16 25 C -0.12 -0.48 10.04 22.31 0.22 -0.25 16 26 C -0.12 -0.55 9.67 22.24 0.21 -0.34 16 27 C -0.12 -0.67 5.50 30.59 0.17 -0.50 16 28 C -0.11 -0.38 5.20 30.60 0.16 -0.22 16 29 H 0.06 -0.13 8.14 -2.39 -0.02 -0.15 16 30 H 0.05 -0.03 8.14 -2.39 -0.02 -0.04 16 31 H 0.05 0.01 8.14 -2.39 -0.02 -0.01 16 32 H 0.06 0.02 8.14 -2.39 -0.02 0.00 16 33 H 0.08 -0.28 8.14 -2.39 -0.02 -0.30 16 34 H 0.08 -0.23 8.14 -2.39 -0.02 -0.25 16 35 H 0.08 -0.32 8.14 -2.39 -0.02 -0.34 16 36 H 0.41 -1.66 8.60 -92.71 -0.80 -2.45 16 37 H 0.13 -0.56 8.04 -2.39 -0.02 -0.58 16 38 H 0.12 -0.06 4.69 -2.38 -0.01 -0.07 16 39 H 0.12 1.09 8.06 -2.91 -0.02 1.07 16 40 H 0.13 0.71 8.06 -2.91 -0.02 0.69 16 41 H 0.09 -0.29 7.96 -2.39 -0.02 -0.31 16 42 H 0.40 -4.08 8.74 -74.06 -0.65 -4.72 16 43 H -0.29 -1.11 7.05 99.48 0.70 -0.41 16 44 H -0.29 -0.93 7.11 99.48 0.71 -0.22 16 45 H 0.12 0.47 4.85 -2.91 -0.01 0.45 16 46 H 0.15 0.10 7.09 -2.91 -0.02 0.08 16 47 H 0.13 0.58 8.06 -2.91 -0.02 0.56 16 48 H 0.14 0.00 8.06 -2.91 -0.02 -0.03 16 49 H 0.14 -0.11 8.06 -2.91 -0.02 -0.13 16 50 H 0.14 0.08 8.06 -2.91 -0.02 0.06 16 51 H 0.07 0.33 8.14 -2.38 -0.02 0.31 16 52 H 0.03 0.42 8.14 -2.39 -0.02 0.40 16 53 H 0.05 0.29 8.14 -2.39 -0.02 0.27 16 54 H 0.06 0.24 8.14 -2.39 -0.02 0.22 16 Total: 0.00 -21.66 427.83 1.03 -20.63 By element: Atomic # 1 Polarization: -4.92 SS G_CDS: -0.51 Total: -5.43 kcal Atomic # 6 Polarization: -3.45 SS G_CDS: 3.70 Total: 0.25 kcal Atomic # 7 Polarization: -1.60 SS G_CDS: -2.25 Total: -3.84 kcal Atomic # 8 Polarization: -9.93 SS G_CDS: -1.96 Total: -11.89 kcal Atomic # 14 Polarization: -1.76 SS G_CDS: 2.05 Total: 0.29 kcal Total: -21.66 1.03 -20.63 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_4279154_13158394.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -8.166 kcal (2) G-P(sol) polarization free energy of solvation -21.662 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.828 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.035 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -20.627 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.793 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.69 seconds