Wall clock time and date at job start Sun Mar 7 2021 19:45:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09002 * 109.47097 * 2 1 4 4 C 1.53005 * 109.47197 * 119.99802 * 2 1 3 5 5 C 1.52997 * 109.47452 * 180.02562 * 4 2 1 6 6 C 1.53002 * 109.46817 * 300.00239 * 5 4 2 7 7 H 1.08992 * 109.47063 * 299.99823 * 6 5 4 8 8 N 1.46499 * 109.46799 * 179.97438 * 6 5 4 9 9 C 1.34778 * 119.99771 * 85.00174 * 8 6 5 10 10 O 1.21582 * 120.00002 * 359.97438 * 9 8 6 11 11 C 1.47567 * 119.99929 * 179.97438 * 9 8 6 12 12 C 1.40216 * 120.12253 * 179.72646 * 11 9 8 13 13 O 1.35646 * 120.00001 * 359.97438 * 12 11 9 14 14 C 1.38816 * 119.99374 * 179.70223 * 12 11 9 15 15 C 1.37768 * 120.24646 * 0.59009 * 14 12 11 16 16 C 1.39843 * 120.24255 * 359.68684 * 15 14 12 17 17 C 1.47822 * 119.99791 * 180.02562 * 16 15 14 18 18 C 1.35934 * 125.93138 * 359.97438 * 17 16 15 19 19 C 1.40972 * 106.74117 * 179.97438 * 18 17 16 20 20 C 1.34708 * 107.03012 * 0.02562 * 19 18 17 21 21 C 1.50697 * 125.66410 * 179.97438 * 20 19 18 22 22 O 1.42904 * 109.47007 * 64.99879 * 21 20 19 23 23 Si 1.86295 * 109.47177 * 184.99972 * 21 20 19 24 24 O 1.34341 * 108.66836 * 359.76626 * 20 19 18 25 25 C 1.39175 * 120.00234 * 0.02562 * 16 15 14 26 26 C 1.53000 * 109.47233 * 60.00194 * 6 5 4 27 27 C 1.52997 * 109.47060 * 299.99657 * 26 6 5 28 28 H 1.09001 * 109.47142 * 299.99965 * 1 2 3 29 29 H 1.08996 * 109.46698 * 60.00019 * 1 2 3 30 30 H 1.09002 * 109.46838 * 179.97438 * 1 2 3 31 31 H 1.09002 * 109.46935 * 60.00099 * 4 2 1 32 32 H 1.09001 * 109.46812 * 300.00441 * 4 2 1 33 33 H 1.08993 * 109.47194 * 179.97438 * 5 4 2 34 34 H 1.09002 * 109.46695 * 59.99734 * 5 4 2 35 35 H 0.97006 * 120.00568 * 264.99947 * 8 6 5 36 36 H 0.96702 * 114.00050 * 90.00424 * 13 12 11 37 37 H 1.08002 * 119.87333 * 180.27744 * 14 12 11 38 38 H 1.08000 * 119.87894 * 179.70084 * 15 14 12 39 39 H 1.08000 * 126.62999 * 359.97438 * 18 17 16 40 40 H 1.08000 * 126.48073 * 180.02562 * 19 18 17 41 41 H 1.09003 * 109.47169 * 305.00178 * 21 20 19 42 42 H 0.96694 * 113.99811 * 60.00357 * 22 21 20 43 43 H 1.48494 * 110.00195 * 179.97438 * 23 21 20 44 44 H 1.48499 * 109.99874 * 301.31984 * 23 21 20 45 45 H 1.08004 * 120.11736 * 179.97438 * 25 16 15 46 46 H 1.09002 * 109.47398 * 59.99826 * 26 6 5 47 47 H 1.09001 * 109.47194 * 180.02562 * 26 6 5 48 48 H 1.08996 * 109.47853 * 180.02562 * 27 26 6 49 49 H 1.09002 * 109.47153 * 300.00319 * 27 26 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0401 -0.7212 1.2493 5 6 3.5700 -0.7207 1.2497 6 6 4.0805 -1.4416 0.0004 7 1 3.7176 -2.4693 0.0002 8 7 5.5455 -1.4406 0.0005 9 6 6.2200 -2.3963 0.6700 10 8 5.6126 -3.2589 1.2742 11 6 7.6957 -2.3956 0.6696 12 6 8.4000 -3.3853 1.3700 13 8 7.7249 -4.3454 2.0500 14 6 9.7881 -3.3857 1.3627 15 6 10.4788 -2.4091 0.6791 16 6 9.7866 -1.4139 -0.0180 17 6 10.5332 -0.3690 -0.7501 18 6 11.8861 -0.2602 -0.8259 19 6 12.1585 0.8721 -1.6202 20 6 10.9710 1.3929 -1.9853 21 6 10.7746 2.6164 -2.8428 22 8 11.2772 2.3632 -4.1564 23 14 8.9588 3.0216 -2.9401 24 8 9.9911 0.6377 -1.4618 25 6 8.3949 -1.4071 -0.0225 26 6 3.5706 -0.7203 -1.2488 27 6 2.0406 -0.7208 -1.2492 28 1 -0.3633 0.5138 0.8900 29 1 -0.3632 0.5138 -0.8900 30 1 -0.3633 -1.0277 -0.0005 31 1 1.6767 -1.7489 1.2493 32 1 1.6766 -0.2074 2.1392 33 1 3.9333 -1.2341 2.1399 34 1 3.9329 0.3071 1.2498 35 1 6.0302 -0.7521 -0.4813 36 1 7.5289 -5.1342 1.5261 37 1 10.3286 -4.1515 1.8991 38 1 11.5588 -2.4123 0.6814 39 1 12.6119 -0.9148 -0.3665 40 1 13.1346 1.2504 -1.8857 41 1 11.3116 3.4575 -2.4043 42 1 10.8440 1.6259 -4.6078 43 1 8.7518 4.2268 -3.7825 44 1 8.2113 1.8705 -3.5069 45 1 7.8584 -0.6391 -0.5600 46 1 3.9336 0.3075 -1.2486 47 1 3.9339 -1.2342 -2.1388 48 1 1.6772 -0.2074 -2.1394 49 1 1.6776 -1.7486 -1.2494 There are 66 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 66 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_4279154_13259648.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 19:45:08 Heat of formation + Delta-G solvation = -75.256590 kcal Electronic energy + Delta-G solvation = -31889.729821 eV Core-core repulsion = 27556.693595 eV Total energy + Delta-G solvation = -4333.036226 eV No. of doubly occupied orbitals = 66 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 358.166 amu Computer time = 1.19 seconds Orbital eigenvalues (eV) -43.69714 -41.68053 -40.31038 -39.01740 -38.20467 -37.83727 -35.72047 -34.22843 -33.12997 -32.67818 -31.78221 -31.46687 -30.04065 -27.07906 -26.38976 -25.11532 -23.77041 -23.59473 -22.96344 -22.24785 -21.61032 -21.28424 -20.72815 -19.63983 -19.16399 -18.36679 -17.73103 -17.50228 -17.34407 -16.71454 -16.51227 -16.30163 -16.11130 -15.79409 -15.55164 -15.43611 -15.21358 -15.20154 -14.65916 -14.45721 -14.35599 -14.22199 -13.95530 -13.78946 -13.67418 -13.53560 -13.24052 -13.22558 -13.15369 -13.10491 -12.88291 -12.54645 -12.13551 -12.11320 -12.00504 -11.86259 -11.63501 -11.30445 -11.14541 -11.06434 -10.84664 -10.78691 -10.48438 -10.31993 -10.05553 -8.90987 -4.95479 -0.56515 -0.21396 0.77008 1.16261 1.47193 1.49363 1.71303 1.86892 1.92304 2.01696 2.62545 3.10547 3.21658 3.30521 3.47575 3.60910 3.68503 3.71609 3.86778 3.92356 4.02075 4.06573 4.08003 4.17382 4.20965 4.34165 4.39351 4.42937 4.46072 4.51561 4.55203 4.63925 4.66801 4.76185 4.79040 4.80191 4.88682 4.95199 4.98054 5.02191 5.07172 5.11806 5.14674 5.17012 5.19994 5.22359 5.33725 5.39400 5.44569 5.46028 5.50395 5.55415 5.98508 6.34930 6.42209 6.71224 7.12101 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.091 4.091 3 H 0.078 0.922 4 C -0.110 4.110 5 C -0.124 4.124 6 C 0.148 3.852 7 H 0.066 0.934 8 N -0.714 5.714 9 C 0.556 3.444 10 O -0.559 6.559 11 C -0.179 4.179 12 C 0.163 3.837 13 O -0.495 6.495 14 C -0.147 4.147 15 C -0.045 4.045 16 C -0.041 4.041 17 C 0.024 3.976 18 C -0.189 4.189 19 C -0.181 4.181 20 C -0.053 4.053 21 C -0.038 4.038 22 O -0.536 6.536 23 Si 0.768 3.232 24 O -0.173 6.173 25 C -0.051 4.051 26 C -0.121 4.121 27 C -0.110 4.110 28 H 0.055 0.945 29 H 0.060 0.940 30 H 0.050 0.950 31 H 0.054 0.946 32 H 0.067 0.933 33 H 0.042 0.958 34 H 0.075 0.925 35 H 0.410 0.590 36 H 0.410 0.590 37 H 0.164 0.836 38 H 0.166 0.834 39 H 0.174 0.826 40 H 0.162 0.838 41 H 0.152 0.848 42 H 0.390 0.610 43 H -0.285 1.285 44 H -0.284 1.284 45 H 0.148 0.852 46 H 0.084 0.916 47 H 0.073 0.927 48 H 0.078 0.922 49 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.172 2.571 -1.975 3.902 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.109 4.109 3 H 0.096 0.904 4 C -0.148 4.148 5 C -0.163 4.163 6 C 0.044 3.956 7 H 0.084 0.916 8 N -0.366 5.366 9 C 0.344 3.656 10 O -0.438 6.438 11 C -0.183 4.183 12 C 0.116 3.884 13 O -0.308 6.308 14 C -0.165 4.165 15 C -0.063 4.063 16 C -0.041 4.041 17 C -0.026 4.026 18 C -0.208 4.208 19 C -0.201 4.201 20 C -0.103 4.103 21 C -0.147 4.147 22 O -0.345 6.345 23 Si 0.671 3.329 24 O -0.071 6.071 25 C -0.070 4.070 26 C -0.159 4.159 27 C -0.148 4.148 28 H 0.074 0.926 29 H 0.079 0.921 30 H 0.070 0.930 31 H 0.073 0.927 32 H 0.085 0.915 33 H 0.061 0.939 34 H 0.094 0.906 35 H 0.248 0.752 36 H 0.270 0.730 37 H 0.181 0.819 38 H 0.183 0.817 39 H 0.192 0.808 40 H 0.180 0.820 41 H 0.170 0.830 42 H 0.239 0.761 43 H -0.212 1.212 44 H -0.210 1.210 45 H 0.166 0.834 46 H 0.103 0.897 47 H 0.092 0.908 48 H 0.097 0.903 49 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges 1.121 2.986 -1.512 3.529 hybrid contribution 0.684 -1.033 -1.248 1.758 sum 1.805 1.953 -2.759 3.832 Atomic orbital electron populations 1.21832 0.94928 1.01796 1.02079 1.21160 0.95732 0.99827 0.94195 0.90383 1.21541 0.94032 1.00703 0.98536 1.21854 0.96450 1.00904 0.97060 1.20996 0.78364 1.00089 0.96125 0.91579 1.45973 1.07546 1.30212 1.52878 1.18287 0.87238 0.81458 0.78600 1.90802 1.70319 1.38595 1.44095 1.20281 0.92937 1.00716 1.04380 1.18904 0.90465 0.89677 0.89334 1.84708 1.76556 1.29813 1.39753 1.21578 0.92156 1.01427 1.01311 1.21420 1.01882 0.90632 0.92346 1.17702 0.91978 0.94462 0.99990 1.20418 0.91807 0.90953 0.99409 1.22158 0.94504 1.00665 1.03492 1.21804 0.99288 0.97648 1.01320 1.23046 0.86572 0.97585 1.03109 1.24542 1.14707 0.93571 0.81924 1.86643 1.64157 1.56680 1.26981 0.93672 0.72141 0.77917 0.89138 1.83907 1.36668 1.33443 1.53067 1.21399 0.93399 0.96452 0.95731 1.21788 0.96643 1.01501 0.95921 1.21545 0.93972 1.00996 0.98294 0.92600 0.92066 0.93037 0.92687 0.91454 0.93933 0.90622 0.75250 0.72968 0.81854 0.81673 0.80833 0.82043 0.83044 0.76055 1.21163 1.21042 0.83392 0.89720 0.90831 0.90290 0.92289 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 0.29 9.20 71.98 0.66 0.95 16 2 C -0.09 0.19 2.72 -10.79 -0.03 0.16 16 3 H 0.08 -0.24 8.14 -2.39 -0.02 -0.26 16 4 C -0.11 -0.08 5.20 30.60 0.16 0.08 16 5 C -0.12 -0.28 5.49 30.59 0.17 -0.11 16 6 C 0.15 0.24 2.45 44.99 0.11 0.35 16 7 H 0.07 0.44 7.58 -2.39 -0.02 0.42 16 8 N -0.71 -0.93 5.03 -445.68 -2.24 -3.17 16 9 C 0.56 4.04 7.73 86.70 0.67 4.71 16 10 O -0.56 -8.31 14.81 17.02 0.25 -8.06 16 11 C -0.18 -0.68 5.88 -20.04 -0.12 -0.80 16 12 C 0.16 0.58 6.72 22.89 0.15 0.73 16 13 O -0.49 -2.94 11.55 -68.62 -0.79 -3.73 16 14 C -0.15 0.28 9.96 22.30 0.22 0.50 16 15 C -0.04 0.16 9.54 22.55 0.22 0.38 16 16 C -0.04 0.04 5.87 -20.13 -0.12 -0.08 16 17 C 0.02 0.00 7.03 24.27 0.17 0.17 16 18 C -0.19 0.31 10.26 22.40 0.23 0.54 16 19 C -0.18 0.12 10.78 22.13 0.24 0.36 16 20 C -0.05 0.04 6.20 24.87 0.15 0.19 16 21 C -0.04 0.12 2.98 71.23 0.21 0.33 16 22 O -0.54 0.24 12.88 -148.98 -1.92 -1.68 16 23 Si 0.77 -2.74 32.11 68.60 2.20 -0.54 16 24 O -0.17 -0.07 8.80 -6.56 -0.06 -0.12 16 25 C -0.05 0.01 9.20 22.79 0.21 0.22 16 26 C -0.12 0.40 5.39 30.59 0.16 0.56 16 27 C -0.11 0.31 5.21 30.59 0.16 0.47 16 28 H 0.05 -0.10 8.14 -2.39 -0.02 -0.12 16 29 H 0.06 -0.17 8.14 -2.39 -0.02 -0.19 16 30 H 0.05 -0.05 8.14 -2.39 -0.02 -0.07 16 31 H 0.05 0.15 8.14 -2.39 -0.02 0.13 16 32 H 0.07 0.03 8.14 -2.39 -0.02 0.01 16 33 H 0.04 0.33 8.14 -2.39 -0.02 0.31 16 34 H 0.08 -0.01 8.14 -2.39 -0.02 -0.02 16 35 H 0.41 -1.68 6.63 -92.70 -0.61 -2.30 16 36 H 0.41 -0.47 9.06 -74.06 -0.67 -1.14 16 37 H 0.16 -0.98 8.06 -2.91 -0.02 -1.01 16 38 H 0.17 -1.53 6.96 -2.91 -0.02 -1.55 16 39 H 0.17 -1.15 7.25 -2.91 -0.02 -1.17 16 40 H 0.16 -0.45 8.06 -2.91 -0.02 -0.47 16 41 H 0.15 -0.95 7.96 -2.39 -0.02 -0.97 16 42 H 0.39 -2.17 8.70 -74.06 -0.64 -2.81 16 43 H -0.28 -0.71 7.11 99.48 0.71 -0.01 16 44 H -0.28 -0.36 7.11 99.48 0.71 0.35 16 45 H 0.15 -0.60 6.24 -2.91 -0.02 -0.62 16 46 H 0.08 -0.50 8.14 -2.39 -0.02 -0.52 16 47 H 0.07 -0.27 8.14 -2.39 -0.02 -0.29 16 48 H 0.08 -0.35 8.14 -2.39 -0.02 -0.37 16 49 H 0.06 -0.06 8.14 -2.39 -0.02 -0.08 16 Total: 0.00 -20.49 401.38 0.19 -20.31 By element: Atomic # 1 Polarization: -11.83 SS G_CDS: -0.89 Total: -12.72 kcal Atomic # 6 Polarization: 6.09 SS G_CDS: 3.64 Total: 9.72 kcal Atomic # 7 Polarization: -0.93 SS G_CDS: -2.24 Total: -3.17 kcal Atomic # 8 Polarization: -11.08 SS G_CDS: -2.52 Total: -13.60 kcal Atomic # 14 Polarization: -2.74 SS G_CDS: 2.20 Total: -0.54 kcal Total: -20.49 0.19 -20.31 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_4279154_13259648.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -54.951 kcal (2) G-P(sol) polarization free energy of solvation -20.494 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -75.444 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.188 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -20.306 kcal (6) G-S(sol) free energy of system = (1) + (5) -75.257 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.19 seconds