Wall clock time and date at job start Sun Mar 7 2021 19:45:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.09004 * 109.47006 * 2 1 4 4 C 1.53003 * 109.47197 * 120.00069 * 2 1 3 5 5 C 1.52994 * 109.46910 * 180.02562 * 4 2 1 6 6 C 1.53004 * 109.47317 * 300.00182 * 5 4 2 7 7 H 1.09004 * 109.46694 * 300.00116 * 6 5 4 8 8 N 1.46505 * 109.47302 * 180.02562 * 6 5 4 9 9 C 1.34776 * 119.99971 * 154.99897 * 8 6 5 10 10 O 1.21576 * 119.99777 * 359.97438 * 9 8 6 11 11 C 1.47646 * 119.99815 * 180.02562 * 9 8 6 12 12 C 1.40169 * 119.97607 * 359.97438 * 11 9 8 13 13 C 1.36354 * 120.67312 * 180.02562 * 12 11 9 14 14 C 1.39329 * 120.23695 * 0.02562 * 13 12 11 15 15 N 1.37402 * 133.25964 * 179.97438 * 14 13 12 16 16 C 1.36864 * 109.98449 * 179.79558 * 15 14 13 17 17 C 1.34187 * 109.96416 * 0.38612 * 16 15 14 18 18 C 1.50707 * 126.53717 * 179.89689 * 17 16 15 19 19 O 1.42903 * 109.46442 * 254.68091 * 18 17 16 20 20 Si 1.86293 * 109.47256 * 14.67658 * 18 17 16 21 21 C 1.40908 * 119.63789 * 0.02562 * 14 13 12 22 22 C 1.39186 * 119.97589 * 179.97438 * 11 9 8 23 23 C 1.52995 * 109.47236 * 60.00236 * 6 5 4 24 24 C 1.52995 * 109.47304 * 240.00655 * 2 1 3 25 25 H 1.08995 * 109.46749 * 299.99537 * 1 2 3 26 26 H 1.08999 * 109.46993 * 59.99580 * 1 2 3 27 27 H 1.08996 * 109.46780 * 179.97438 * 1 2 3 28 28 H 1.08998 * 109.46574 * 60.00315 * 4 2 1 29 29 H 1.09000 * 109.46912 * 300.00071 * 4 2 1 30 30 H 1.09003 * 109.47345 * 180.02562 * 5 4 2 31 31 H 1.09004 * 109.47333 * 59.99906 * 5 4 2 32 32 H 0.96998 * 119.99519 * 334.99662 * 8 6 5 33 33 H 1.07999 * 119.66373 * 0.02660 * 12 11 9 34 34 H 1.07999 * 119.88322 * 180.02562 * 13 12 11 35 35 H 0.97001 * 125.00376 * 0.03263 * 15 14 13 36 36 H 1.07993 * 125.01767 * 180.23288 * 16 15 14 37 37 H 1.08999 * 109.47345 * 134.68161 * 18 17 16 38 38 H 0.96700 * 114.00311 * 60.00230 * 19 18 17 39 39 H 1.48501 * 109.99918 * 58.68485 * 20 18 17 40 40 H 1.48506 * 109.99973 * 180.02562 * 20 18 17 41 41 H 1.08003 * 120.30457 * 0.02562 * 22 11 9 42 42 H 1.08996 * 109.47265 * 59.99953 * 23 6 5 43 43 H 1.08995 * 109.47550 * 180.02562 * 23 6 5 44 44 H 1.09004 * 109.46554 * 299.99621 * 24 2 1 45 45 H 1.08993 * 109.47685 * 59.99388 * 24 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0401 -0.7213 1.2493 5 6 3.5700 -0.7207 1.2495 6 6 4.0806 -1.4415 0.0002 7 1 3.7176 -2.4693 0.0000 8 7 5.5456 -1.4415 0.0008 9 6 6.2198 -2.3973 -0.6688 10 8 5.6121 -3.2599 -1.2728 11 6 7.6962 -2.3976 -0.6677 12 6 8.3962 -1.4032 0.0293 13 6 9.7597 -1.3895 0.0394 14 6 10.4762 -2.3679 -0.6466 15 7 11.8186 -2.6077 -0.8149 16 6 12.0014 -3.7210 -1.5897 17 6 10.8127 -4.2277 -1.9514 18 6 10.5796 -5.4471 -2.8058 19 8 10.1607 -5.0414 -4.1104 20 14 12.1599 -6.4248 -2.9370 21 6 9.7842 -3.3724 -1.3520 22 6 8.3920 -3.3853 -1.3589 23 6 3.5706 -0.7202 -1.2490 24 6 2.0401 -0.7211 -1.2493 25 1 -0.3633 0.5137 0.8900 26 1 -0.3633 0.5139 -0.8899 27 1 -0.3633 -1.0276 -0.0005 28 1 1.6768 -1.7489 1.2491 29 1 1.6767 -0.2074 2.1392 30 1 3.9335 -1.2349 2.1393 31 1 3.9330 0.3071 1.2497 32 1 6.0303 -0.7534 0.4830 33 1 7.8501 -0.6400 0.5639 34 1 10.2861 -0.6176 0.5810 35 1 12.5317 -2.0695 -0.4370 36 1 12.9607 -4.1298 -1.8707 37 1 9.8058 -6.0663 -2.3519 38 1 10.8021 -4.4861 -4.5746 39 1 12.6231 -6.8254 -1.5842 40 1 11.9434 -7.6297 -3.7777 41 1 7.8568 -4.1532 -1.8977 42 1 3.9335 0.3075 -1.2487 43 1 3.9339 -1.2339 -2.1390 44 1 1.6768 -1.7488 -1.2493 45 1 1.6767 -0.2073 -2.1392 There are 58 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 58 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_4279154_13287722.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 19:45:11 Heat of formation + Delta-G solvation = -26.223584 kcal Electronic energy + Delta-G solvation = -25848.018531 eV Core-core repulsion = 22217.273150 eV Total energy + Delta-G solvation = -3630.745381 eV No. of doubly occupied orbitals = 58 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 315.162 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -42.46591 -41.18588 -39.44591 -37.94226 -37.42033 -35.78549 -33.28073 -32.44363 -31.77855 -30.75786 -30.32505 -27.01355 -26.47720 -24.64817 -23.77688 -23.45341 -22.24157 -21.53566 -20.94369 -20.57193 -19.30842 -18.50337 -17.64671 -17.46523 -16.92096 -16.37974 -16.10519 -16.01348 -15.58081 -15.33248 -15.24437 -15.18320 -15.12572 -14.86376 -14.76941 -14.24226 -14.08818 -13.85279 -13.72983 -13.52191 -13.23768 -13.15317 -12.67477 -12.52059 -12.37359 -12.20689 -12.11881 -11.94984 -11.92693 -11.69745 -11.32473 -11.16060 -10.97542 -10.81489 -10.33746 -10.16002 -9.33845 -8.81484 -5.01703 -0.17690 0.19187 1.34757 1.52163 1.70420 1.82186 2.02440 2.07082 2.13131 2.86561 3.57793 3.60902 3.65441 3.70202 3.73336 3.84876 3.91584 3.92380 4.07321 4.14453 4.17262 4.35732 4.37642 4.42369 4.44454 4.51300 4.53755 4.56150 4.59789 4.75146 4.77957 4.79148 4.94929 4.97835 4.99265 5.07599 5.11745 5.16784 5.21710 5.25539 5.32325 5.34469 5.39564 5.44193 5.50167 5.55661 5.56834 5.97521 6.49591 6.60429 6.86710 7.16930 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.090 4.090 3 H 0.080 0.920 4 C -0.111 4.111 5 C -0.118 4.118 6 C 0.145 3.855 7 H 0.059 0.941 8 N -0.708 5.708 9 C 0.558 3.442 10 O -0.591 6.591 11 C -0.179 4.179 12 C -0.068 4.068 13 C -0.124 4.124 14 C 0.111 3.889 15 N -0.571 5.571 16 C 0.088 3.912 17 C -0.228 4.228 18 C -0.055 4.055 19 O -0.565 6.565 20 Si 0.814 3.186 21 C -0.130 4.130 22 C -0.025 4.025 23 C -0.124 4.124 24 C -0.111 4.111 25 H 0.062 0.938 26 H 0.055 0.945 27 H 0.049 0.951 28 H 0.055 0.945 29 H 0.081 0.919 30 H 0.075 0.925 31 H 0.088 0.912 32 H 0.415 0.585 33 H 0.161 0.839 34 H 0.164 0.836 35 H 0.440 0.560 36 H 0.222 0.778 37 H 0.082 0.918 38 H 0.393 0.607 39 H -0.278 1.278 40 H -0.308 1.308 41 H 0.102 0.898 42 H 0.078 0.922 43 H 0.038 0.962 44 H 0.051 0.949 45 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.849 7.677 3.968 11.674 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.108 4.108 3 H 0.098 0.902 4 C -0.149 4.149 5 C -0.155 4.155 6 C 0.041 3.959 7 H 0.077 0.923 8 N -0.360 5.360 9 C 0.348 3.652 10 O -0.472 6.472 11 C -0.184 4.184 12 C -0.088 4.088 13 C -0.144 4.144 14 C 0.001 3.999 15 N -0.174 5.174 16 C -0.039 4.039 17 C -0.235 4.235 18 C -0.164 4.164 19 O -0.373 6.373 20 Si 0.719 3.281 21 C -0.135 4.135 22 C -0.045 4.045 23 C -0.163 4.163 24 C -0.149 4.149 25 H 0.081 0.919 26 H 0.074 0.926 27 H 0.068 0.932 28 H 0.074 0.926 29 H 0.100 0.900 30 H 0.094 0.906 31 H 0.107 0.893 32 H 0.253 0.747 33 H 0.178 0.822 34 H 0.181 0.819 35 H 0.281 0.719 36 H 0.238 0.762 37 H 0.099 0.901 38 H 0.243 0.757 39 H -0.205 1.205 40 H -0.236 1.236 41 H 0.120 0.880 42 H 0.097 0.903 43 H 0.057 0.943 44 H 0.070 0.930 45 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges 7.405 6.067 3.927 10.347 hybrid contribution -0.675 -0.026 0.240 0.717 sum 6.731 6.041 4.167 9.958 Atomic orbital electron populations 1.21834 0.94935 1.01734 1.02140 1.21158 0.95729 0.99854 0.94094 0.90184 1.21556 0.94132 1.00865 0.98343 1.21770 0.96488 1.01582 0.95699 1.21012 0.78677 0.99837 0.96372 0.92274 1.45852 1.07300 1.30091 1.52712 1.18543 0.87859 0.80831 0.77965 1.90758 1.70998 1.39648 1.45831 1.19595 0.91764 1.00568 1.06445 1.20880 0.93952 0.96856 0.97086 1.20077 0.93369 0.99010 1.01946 1.18621 0.84672 0.97167 0.99435 1.41775 1.05394 1.25554 1.44709 1.22241 0.99526 0.88008 0.94139 1.20857 0.92228 1.01888 1.08511 1.24788 1.10627 0.97726 0.83220 1.86488 1.49998 1.73146 1.27708 0.94028 0.77266 0.78388 0.78451 1.19234 0.92556 0.98652 1.03049 1.20580 0.92616 0.96335 0.94990 1.21863 0.96458 1.00941 0.96996 1.21559 0.94046 1.00599 0.98706 0.91886 0.92619 0.93185 0.92576 0.90007 0.90642 0.89336 0.74702 0.82205 0.81884 0.71855 0.76223 0.90074 0.75687 1.20514 1.23645 0.87964 0.90338 0.94299 0.92981 0.91436 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 0.16 9.19 71.98 0.66 0.83 16 2 C -0.09 0.10 2.72 -10.79 -0.03 0.07 16 3 H 0.08 -0.20 8.14 -2.39 -0.02 -0.22 16 4 C -0.11 0.21 5.20 30.59 0.16 0.37 16 5 C -0.12 0.31 5.39 30.59 0.16 0.47 16 6 C 0.15 0.52 2.45 44.99 0.11 0.63 16 7 H 0.06 0.58 7.58 -2.39 -0.02 0.57 16 8 N -0.71 -2.12 5.03 -445.59 -2.24 -4.36 16 9 C 0.56 6.31 7.73 86.73 0.67 6.99 16 10 O -0.59 -12.46 15.99 -3.95 -0.06 -12.52 16 11 C -0.18 -1.45 5.87 -20.10 -0.12 -1.57 16 12 C -0.07 0.03 9.46 22.30 0.21 0.24 16 13 C -0.12 0.32 10.00 22.09 0.22 0.54 16 14 C 0.11 0.07 7.27 39.19 0.28 0.36 16 15 N -0.57 3.55 6.05 -187.49 -1.13 2.42 16 16 C 0.09 -0.51 10.43 82.98 0.87 0.36 16 17 C -0.23 -0.55 5.58 -18.61 -0.10 -0.65 16 18 C -0.06 -0.19 3.06 71.24 0.22 0.03 16 19 O -0.57 -3.06 12.88 -148.98 -1.92 -4.98 16 20 Si 0.81 -2.29 30.75 68.60 2.11 -0.18 16 21 C -0.13 -0.94 6.34 -20.21 -0.13 -1.07 16 22 C -0.03 -0.30 9.64 22.74 0.22 -0.09 16 23 C -0.12 -0.49 5.50 30.61 0.17 -0.32 16 24 C -0.11 -0.25 5.21 30.61 0.16 -0.10 16 25 H 0.06 -0.15 8.14 -2.39 -0.02 -0.17 16 26 H 0.05 -0.05 8.14 -2.39 -0.02 -0.07 16 27 H 0.05 0.01 8.14 -2.39 -0.02 -0.01 16 28 H 0.06 0.02 8.14 -2.39 -0.02 0.00 16 29 H 0.08 -0.33 8.14 -2.39 -0.02 -0.35 16 30 H 0.07 -0.24 8.14 -2.39 -0.02 -0.26 16 31 H 0.09 -0.53 8.14 -2.39 -0.02 -0.55 16 32 H 0.41 -1.82 6.60 -92.71 -0.61 -2.44 16 33 H 0.16 -1.28 6.36 -2.91 -0.02 -1.30 16 34 H 0.16 -1.60 8.06 -2.91 -0.02 -1.63 16 35 H 0.44 -5.99 8.96 -92.71 -0.83 -6.82 16 36 H 0.22 -3.32 6.34 -2.91 -0.02 -3.34 16 37 H 0.08 0.67 7.96 -2.39 -0.02 0.65 16 38 H 0.39 -1.71 8.70 -74.06 -0.64 -2.35 16 39 H -0.28 -0.25 7.11 99.48 0.71 0.46 16 40 H -0.31 -1.88 7.11 99.48 0.71 -1.17 16 41 H 0.10 1.78 7.64 -2.91 -0.02 1.76 16 42 H 0.08 0.07 8.14 -2.39 -0.02 0.06 16 43 H 0.04 0.39 8.14 -2.39 -0.02 0.37 16 44 H 0.05 0.25 8.14 -2.39 -0.02 0.24 16 45 H 0.07 0.13 8.14 -2.39 -0.02 0.11 16 Total: 0.00 -28.46 361.88 -0.54 -29.00 By element: Atomic # 1 Polarization: -15.44 SS G_CDS: -1.03 Total: -16.47 kcal Atomic # 6 Polarization: 3.36 SS G_CDS: 3.73 Total: 7.10 kcal Atomic # 7 Polarization: 1.43 SS G_CDS: -3.37 Total: -1.95 kcal Atomic # 8 Polarization: -15.52 SS G_CDS: -1.98 Total: -17.50 kcal Atomic # 14 Polarization: -2.29 SS G_CDS: 2.11 Total: -0.18 kcal Total: -28.46 -0.54 -29.00 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_4279154_13287722.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.775 kcal (2) G-P(sol) polarization free energy of solvation -28.459 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.684 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.539 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -28.999 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.224 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds