Wall clock time and date at job start Sun Mar 7 2021 19:45:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09000 * 109.46497 * 2 1 4 4 C 1.52996 * 109.46969 * 119.99840 * 2 1 3 5 5 C 1.53002 * 109.46972 * 180.02562 * 4 2 1 6 6 C 1.52997 * 109.46817 * 299.99733 * 5 4 2 7 7 H 1.09001 * 109.47502 * 300.00518 * 6 5 4 8 8 N 1.46500 * 109.47007 * 180.02562 * 6 5 4 9 9 C 1.34773 * 120.00050 * 85.00124 * 8 6 5 10 10 O 1.21595 * 120.00038 * 0.02562 * 9 8 6 11 11 C 1.47563 * 119.99792 * 179.97438 * 9 8 6 12 12 C 1.39824 * 120.00376 * 359.72683 * 11 9 8 13 13 C 1.36561 * 119.99975 * 179.73678 * 12 11 9 14 14 C 1.39821 * 120.00170 * 0.56147 * 13 12 11 15 15 C 1.47560 * 120.00254 * 179.71868 * 14 13 12 16 16 C 1.34980 * 125.27736 * 359.96907 * 15 14 13 17 17 C 1.37796 * 114.70397 * 179.97438 * 16 15 14 18 18 C 1.33739 * 115.07883 * 0.02562 * 17 16 15 19 19 C 1.50699 * 125.11517 * 179.97438 * 18 17 16 20 20 O 1.42905 * 109.47473 * 300.00156 * 19 18 17 21 21 Si 1.86305 * 109.46984 * 179.97438 * 19 18 17 22 22 S 1.75854 * 109.76323 * 359.77358 * 18 17 16 23 23 C 1.39825 * 120.00137 * 359.69174 * 14 13 12 24 24 C 1.36568 * 119.99853 * 0.02562 * 23 14 13 25 25 C 1.53006 * 109.47127 * 60.00361 * 6 5 4 26 26 C 1.52997 * 109.47143 * 239.99770 * 2 1 3 27 27 H 1.09000 * 109.47312 * 300.00221 * 1 2 3 28 28 H 1.09002 * 109.47593 * 60.00252 * 1 2 3 29 29 H 1.09004 * 109.46930 * 180.02562 * 1 2 3 30 30 H 1.08996 * 109.47452 * 59.99938 * 4 2 1 31 31 H 1.09000 * 109.47054 * 300.00097 * 4 2 1 32 32 H 1.09002 * 109.47070 * 179.97438 * 5 4 2 33 33 H 1.08996 * 109.47407 * 59.99513 * 5 4 2 34 34 H 0.97002 * 120.00030 * 265.00025 * 8 6 5 35 35 H 1.08010 * 119.99976 * 0.02562 * 12 11 9 36 36 H 1.08004 * 120.00085 * 180.27132 * 13 12 11 37 37 H 1.08009 * 122.64695 * 359.94775 * 16 15 14 38 38 H 1.07999 * 122.45737 * 179.97438 * 17 16 15 39 39 H 1.08997 * 109.47086 * 60.00629 * 19 18 17 40 40 H 0.96695 * 113.99389 * 299.99993 * 20 19 18 41 41 H 1.48499 * 109.99823 * 180.02562 * 21 19 18 42 42 H 1.48494 * 110.00087 * 301.32172 * 21 19 18 43 43 H 1.07993 * 120.00282 * 180.02562 * 23 14 13 44 44 H 1.07997 * 119.99963 * 179.97438 * 24 23 14 45 45 H 1.08993 * 109.46955 * 60.00011 * 25 6 5 46 46 H 1.09000 * 109.47050 * 179.97438 * 25 6 5 47 47 H 1.09002 * 109.47153 * 60.00035 * 26 2 1 48 48 H 1.08993 * 109.47194 * 300.00323 * 26 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8932 1.0277 0.0000 4 6 2.0400 -0.7212 1.2492 5 6 3.5700 -0.7206 1.2496 6 6 4.0804 -1.4416 0.0004 7 1 3.7174 -2.4694 0.0001 8 7 5.5454 -1.4416 0.0010 9 6 6.2190 -2.3979 0.6704 10 8 5.6108 -3.2609 1.2736 11 6 7.6947 -2.3982 0.6705 12 6 8.3941 -1.4098 -0.0287 13 6 9.7597 -1.4070 -0.0241 14 6 10.4586 -2.3993 0.6700 15 6 11.9342 -2.3999 0.6698 16 6 12.7140 -1.4978 0.0374 17 6 14.0685 -1.7051 0.1828 18 6 14.4031 -2.7657 0.9255 19 6 15.8135 -3.2007 1.2297 20 8 16.4963 -3.4913 0.0084 21 14 15.7760 -4.7259 2.2990 22 16 12.9496 -3.5728 1.4986 23 6 9.7592 -3.3909 1.3649 24 6 8.3935 -3.3904 1.3651 25 6 3.5705 -0.7204 -1.2489 26 6 2.0400 -0.7213 -1.2492 27 1 -0.3634 0.5139 0.8900 28 1 -0.3634 0.5138 -0.8900 29 1 -0.3633 -1.0277 0.0005 30 1 1.6767 -1.7488 1.2493 31 1 1.6766 -0.2073 2.1392 32 1 3.9333 -1.2341 2.1398 33 1 3.9330 0.3071 1.2497 34 1 6.0307 -0.7534 -0.4805 35 1 7.8543 -0.6457 -0.5685 36 1 10.3000 -0.6409 -0.5606 37 1 12.3083 -0.6783 -0.5375 38 1 14.8057 -1.0590 -0.2706 39 1 16.3348 -2.4012 1.7561 40 1 16.0869 -4.1950 -0.5132 41 1 17.1610 -5.1647 2.6066 42 1 15.0411 -4.4452 3.5584 43 1 10.2990 -4.1571 1.9013 44 1 7.8534 -4.1565 1.9014 45 1 3.9335 0.3073 -1.2488 46 1 3.9345 -1.2338 -2.1389 47 1 1.6767 -0.2075 -2.1392 48 1 1.6767 -1.7489 -1.2492 There are 63 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 63 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_4279154_13308390.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 19:45:31 Heat of formation + Delta-G solvation = -20.793859 kcal Electronic energy + Delta-G solvation = -27941.243578 eV Core-core repulsion = 24053.321905 eV Total energy + Delta-G solvation = -3887.921674 eV No. of doubly occupied orbitals = 63 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 358.139 amu Computer time = 1.21 seconds Orbital eigenvalues (eV) -41.54818 -40.25449 -39.37127 -38.85551 -37.36453 -35.81988 -33.68864 -32.51918 -31.81835 -31.76422 -30.38122 -27.60225 -26.54283 -24.67455 -23.98766 -23.70475 -23.41940 -22.25149 -21.56961 -20.77426 -20.25056 -19.21312 -18.58250 -17.72711 -17.32106 -16.67793 -16.36939 -16.23767 -16.19003 -16.04051 -15.64139 -15.39494 -15.21463 -15.19383 -14.98985 -14.54979 -14.49533 -14.32704 -14.19874 -13.90155 -13.65170 -13.61207 -13.31553 -13.22017 -13.15244 -13.07609 -12.59871 -12.54161 -12.29432 -12.10685 -12.07827 -11.92526 -11.69301 -11.57442 -11.31686 -11.15546 -10.98555 -10.81629 -10.53924 -10.19731 -10.13112 -9.55769 -9.03660 -5.16517 -0.89543 0.24884 0.33187 0.37869 0.75962 1.21566 1.52094 1.58611 1.84396 1.95989 2.04553 2.82387 3.38824 3.44350 3.61200 3.67214 3.71435 3.74108 3.74987 3.83848 3.92666 4.09250 4.18157 4.19692 4.30941 4.36548 4.39885 4.43934 4.46297 4.52855 4.54947 4.57258 4.61985 4.76983 4.80119 4.91387 4.95496 4.99238 5.01318 5.08859 5.09919 5.13447 5.18249 5.21604 5.23648 5.28458 5.31794 5.34463 5.40632 5.46197 5.47855 5.56345 5.72749 6.45724 6.65959 7.12563 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.091 4.091 3 H 0.078 0.922 4 C -0.111 4.111 5 C -0.124 4.124 6 C 0.146 3.854 7 H 0.063 0.937 8 N -0.708 5.708 9 C 0.556 3.444 10 O -0.582 6.582 11 C -0.151 4.151 12 C -0.067 4.067 13 C -0.108 4.108 14 C 0.007 3.993 15 C -0.160 4.160 16 C -0.116 4.116 17 C -0.110 4.110 18 C -0.221 4.221 19 C -0.024 4.024 20 O -0.546 6.546 21 Si 0.716 3.284 22 S 0.121 5.879 23 C -0.128 4.128 24 C -0.065 4.065 25 C -0.119 4.119 26 C -0.111 4.111 27 H 0.054 0.946 28 H 0.061 0.939 29 H 0.050 0.950 30 H 0.053 0.947 31 H 0.066 0.934 32 H 0.041 0.959 33 H 0.076 0.924 34 H 0.415 0.585 35 H 0.163 0.837 36 H 0.161 0.839 37 H 0.167 0.833 38 H 0.154 0.846 39 H 0.123 0.877 40 H 0.397 0.603 41 H -0.269 1.269 42 H -0.268 1.268 43 H 0.134 0.866 44 H 0.128 0.872 45 H 0.086 0.914 46 H 0.076 0.924 47 H 0.080 0.920 48 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.044 3.994 -5.091 6.471 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.109 4.109 3 H 0.096 0.904 4 C -0.149 4.149 5 C -0.163 4.163 6 C 0.041 3.959 7 H 0.082 0.918 8 N -0.360 5.360 9 C 0.345 3.655 10 O -0.463 6.463 11 C -0.154 4.154 12 C -0.086 4.086 13 C -0.128 4.128 14 C 0.005 3.995 15 C -0.277 4.277 16 C -0.146 4.146 17 C -0.140 4.140 18 C -0.339 4.339 19 C -0.138 4.138 20 O -0.355 6.355 21 Si 0.620 3.380 22 S 0.389 5.611 23 C -0.147 4.147 24 C -0.084 4.084 25 C -0.156 4.156 26 C -0.149 4.149 27 H 0.073 0.927 28 H 0.080 0.920 29 H 0.069 0.931 30 H 0.072 0.928 31 H 0.085 0.915 32 H 0.060 0.940 33 H 0.095 0.905 34 H 0.253 0.747 35 H 0.180 0.820 36 H 0.179 0.821 37 H 0.184 0.816 38 H 0.172 0.828 39 H 0.140 0.860 40 H 0.247 0.753 41 H -0.194 1.194 42 H -0.194 1.194 43 H 0.152 0.848 44 H 0.146 0.854 45 H 0.105 0.895 46 H 0.095 0.905 47 H 0.098 0.902 48 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -0.027 2.200 -2.788 3.552 hybrid contribution 0.464 1.644 -0.590 1.807 sum 0.436 3.844 -3.378 5.136 Atomic orbital electron populations 1.21836 0.95011 1.01759 1.02063 1.21160 0.95686 0.99830 0.94242 0.90351 1.21545 0.94129 1.00659 0.98566 1.21859 0.96405 1.00942 0.97099 1.21022 0.78554 1.00033 0.96259 0.91848 1.45904 1.07449 1.30036 1.52569 1.18518 0.87784 0.81007 0.78232 1.90779 1.70804 1.39265 1.45442 1.20039 0.92085 0.99554 1.03765 1.21260 0.94433 0.96749 0.96154 1.21200 0.93971 0.98476 0.99149 1.18460 0.89287 0.95324 0.96474 1.23162 0.95767 1.02136 1.06595 1.20641 0.92489 1.00493 1.01001 1.20185 0.96474 0.97633 0.99698 1.25165 0.99021 1.02293 1.07403 1.24396 0.87532 1.08149 0.93703 1.86491 1.53869 1.61120 1.33974 0.94183 0.82352 0.81456 0.80032 1.84200 0.96204 1.29958 1.50784 1.21030 0.93914 0.99250 1.00528 1.20942 0.93998 0.97146 0.96274 1.21780 0.96446 1.01563 0.95849 1.21559 0.94180 1.00915 0.98242 0.92698 0.92004 0.93095 0.92789 0.91540 0.93966 0.90505 0.74691 0.81990 0.82114 0.81563 0.82819 0.86002 0.75321 1.19381 1.19439 0.84816 0.85441 0.89508 0.90533 0.90173 0.92412 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 0.35 9.19 71.98 0.66 1.01 16 2 C -0.09 0.24 2.72 -10.79 -0.03 0.21 16 3 H 0.08 -0.29 8.14 -2.39 -0.02 -0.31 16 4 C -0.11 -0.02 5.20 30.59 0.16 0.14 16 5 C -0.12 -0.17 5.49 30.59 0.17 0.00 16 6 C 0.15 0.09 2.45 44.99 0.11 0.20 16 7 H 0.06 0.40 7.57 -2.39 -0.02 0.39 16 8 N -0.71 0.36 5.03 -445.66 -2.24 -1.88 16 9 C 0.56 3.59 7.73 86.70 0.67 4.26 16 10 O -0.58 -9.03 15.99 -4.02 -0.06 -9.09 16 11 C -0.15 -0.44 5.88 -20.05 -0.12 -0.56 16 12 C -0.07 0.25 9.48 22.26 0.21 0.46 16 13 C -0.11 0.40 9.48 22.26 0.21 0.61 16 14 C 0.01 0.00 5.88 -20.05 -0.12 -0.12 16 15 C -0.16 -0.01 6.37 23.98 0.15 0.15 16 16 C -0.12 0.27 9.64 21.42 0.21 0.47 16 17 C -0.11 0.15 10.00 21.14 0.21 0.36 16 18 C -0.22 0.15 5.73 24.66 0.14 0.29 16 19 C -0.02 0.03 2.96 71.24 0.21 0.24 16 20 O -0.55 0.63 12.86 -148.98 -1.92 -1.28 16 21 Si 0.72 -0.93 30.96 68.60 2.12 1.20 16 22 S 0.12 -0.01 19.46 -56.49 -1.10 -1.11 16 23 C -0.13 -0.30 9.54 22.26 0.21 -0.08 16 24 C -0.06 -0.30 9.53 22.27 0.21 -0.09 16 25 C -0.12 0.56 5.39 30.61 0.17 0.73 16 26 C -0.11 0.41 5.21 30.61 0.16 0.57 16 27 H 0.05 -0.11 8.14 -2.39 -0.02 -0.13 16 28 H 0.06 -0.20 8.14 -2.39 -0.02 -0.22 16 29 H 0.05 -0.06 8.14 -2.38 -0.02 -0.08 16 30 H 0.05 0.14 8.14 -2.39 -0.02 0.12 16 31 H 0.07 0.01 8.14 -2.39 -0.02 -0.01 16 32 H 0.04 0.29 8.14 -2.39 -0.02 0.27 16 33 H 0.08 -0.09 8.14 -2.39 -0.02 -0.11 16 34 H 0.41 -3.11 6.61 -92.71 -0.61 -3.73 16 35 H 0.16 -1.79 6.38 -2.91 -0.02 -1.80 16 36 H 0.16 -1.51 6.74 -2.91 -0.02 -1.52 16 37 H 0.17 -1.23 6.88 -2.91 -0.02 -1.25 16 38 H 0.15 -0.50 8.06 -2.91 -0.02 -0.52 16 39 H 0.12 -0.14 7.96 -2.39 -0.02 -0.16 16 40 H 0.40 -3.44 8.70 -74.06 -0.64 -4.08 16 41 H -0.27 -1.23 7.11 99.48 0.71 -0.52 16 42 H -0.27 -0.99 7.11 99.48 0.71 -0.29 16 43 H 0.13 0.06 7.26 -2.91 -0.02 0.04 16 44 H 0.13 0.83 7.64 -2.91 -0.02 0.81 16 45 H 0.09 -0.67 8.14 -2.39 -0.02 -0.69 16 46 H 0.08 -0.41 8.14 -2.39 -0.02 -0.43 16 47 H 0.08 -0.43 8.14 -2.39 -0.02 -0.45 16 48 H 0.06 -0.09 8.14 -2.39 -0.02 -0.11 16 Total: 0.00 -18.29 397.90 0.16 -18.12 By element: Atomic # 1 Polarization: -14.57 SS G_CDS: -0.24 Total: -14.81 kcal Atomic # 6 Polarization: 5.26 SS G_CDS: 3.60 Total: 8.86 kcal Atomic # 7 Polarization: 0.36 SS G_CDS: -2.24 Total: -1.88 kcal Atomic # 8 Polarization: -8.40 SS G_CDS: -1.98 Total: -10.38 kcal Atomic # 14 Polarization: -0.93 SS G_CDS: 2.12 Total: 1.20 kcal Atomic # 16 Polarization: -0.01 SS G_CDS: -1.10 Total: -1.11 kcal Total: -18.29 0.16 -18.12 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_4279154_13308390.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.670 kcal (2) G-P(sol) polarization free energy of solvation -18.288 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.958 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.164 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -18.124 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.794 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.21 seconds