Wall clock time and date at job start Sun Mar 7 2021 19:46:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.09000 * 109.47089 * 2 1 4 4 C 1.53002 * 109.46628 * 120.00130 * 2 1 3 5 5 C 1.53006 * 109.46628 * 180.02562 * 4 2 1 6 6 C 1.52993 * 109.47028 * 299.99857 * 5 4 2 7 7 H 1.09000 * 109.47196 * 299.99948 * 6 5 4 8 8 N 1.46506 * 109.47171 * 180.02562 * 6 5 4 9 9 C 1.34773 * 119.99968 * 84.99494 * 8 6 5 10 10 O 1.21283 * 120.00360 * 359.73034 * 9 8 6 11 11 C 1.50706 * 120.00081 * 180.02562 * 9 8 6 12 12 O 1.42894 * 109.47263 * 179.72605 * 11 9 8 13 13 C 1.35898 * 116.99879 * 179.97438 * 12 11 9 14 14 C 1.38734 * 120.05666 * 359.72678 * 13 12 11 15 15 C 1.38147 * 119.94132 * 179.70263 * 14 13 12 16 16 C 1.38260 * 120.05911 * 0.59143 * 15 14 13 17 17 C 1.50694 * 119.94683 * 179.70200 * 16 15 14 18 18 O 1.42901 * 109.47172 * 119.98419 * 17 16 15 19 19 Si 1.86296 * 109.47134 * 359.97438 * 17 16 15 20 20 C 1.38271 * 120.10844 * 359.68519 * 16 15 14 21 21 C 1.38144 * 120.05655 * 0.02562 * 20 16 15 22 22 C 1.52994 * 109.47383 * 60.00370 * 6 5 4 23 23 C 1.52992 * 109.47043 * 239.99591 * 2 1 3 24 24 H 1.09000 * 109.47089 * 180.02562 * 1 2 3 25 25 H 1.08993 * 109.46911 * 300.00517 * 1 2 3 26 26 H 1.09004 * 109.46419 * 60.00205 * 1 2 3 27 27 H 1.09002 * 109.46998 * 299.99145 * 4 2 1 28 28 H 1.09000 * 109.47491 * 60.00117 * 4 2 1 29 29 H 1.09007 * 109.46917 * 179.97438 * 5 4 2 30 30 H 1.09000 * 109.47089 * 59.99870 * 5 4 2 31 31 H 0.96998 * 119.99507 * 265.00350 * 8 6 5 32 32 H 1.09001 * 109.46564 * 299.73030 * 11 9 8 33 33 H 1.08998 * 109.47012 * 59.72084 * 11 9 8 34 34 H 1.08002 * 120.02646 * 359.97438 * 14 13 12 35 35 H 1.08001 * 119.96878 * 180.32114 * 15 14 13 36 36 H 1.08998 * 109.47471 * 239.97975 * 17 16 15 37 37 H 0.96701 * 114.00181 * 180.02562 * 18 17 16 38 38 H 1.48501 * 109.99945 * 59.99910 * 19 17 16 39 39 H 1.48505 * 110.00013 * 181.31943 * 19 17 16 40 40 H 1.08005 * 119.96790 * 180.02562 * 20 16 15 41 41 H 1.08003 * 120.02296 * 180.02562 * 21 20 16 42 42 H 1.09000 * 109.47299 * 59.99641 * 22 6 5 43 43 H 1.09006 * 109.47305 * 179.97438 * 22 6 5 44 44 H 1.09004 * 109.47346 * 60.00771 * 23 2 1 45 45 H 1.08992 * 109.47696 * 300.00448 * 23 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0399 -0.7213 1.2493 5 6 3.5700 -0.7208 1.2496 6 6 4.0805 -1.4416 0.0004 7 1 3.7175 -2.4694 0.0002 8 7 5.5455 -1.4416 0.0010 9 6 6.2191 -2.3979 0.6705 10 8 5.6125 -3.2556 1.2766 11 6 7.7262 -2.3976 0.6716 12 8 8.2022 -3.4977 1.4495 13 6 9.5494 -3.6431 1.5528 14 6 10.3958 -2.7487 0.9138 15 6 11.7650 -2.8951 1.0254 16 6 12.2920 -3.9391 1.7630 17 6 13.7859 -4.1003 1.8776 18 8 14.1693 -4.0232 3.2520 19 14 14.6320 -2.7450 0.9196 20 6 11.4505 -4.8351 2.3961 21 6 10.0806 -4.6896 2.2925 22 6 3.5706 -0.7204 -1.2488 23 6 2.0400 -0.7213 -1.2491 24 1 -0.3633 -1.0277 0.0005 25 1 -0.3633 0.5139 0.8899 26 1 -0.3632 0.5138 -0.8901 27 1 1.6767 -0.2074 2.1393 28 1 1.6766 -1.7490 1.2493 29 1 3.9333 -1.2342 2.1399 30 1 3.9330 0.3070 1.2498 31 1 6.0307 -0.7533 -0.4804 32 1 8.0902 -2.4914 -0.3515 33 1 8.0890 -1.4642 1.1021 34 1 9.9847 -1.9361 0.3332 35 1 12.4243 -2.1961 0.5324 36 1 14.0789 -5.0689 1.4725 37 1 15.1200 -4.1187 3.4011 38 1 14.2407 -1.4192 1.4620 39 1 16.1056 -2.9112 0.9983 40 1 11.8646 -5.6496 2.9721 41 1 9.4238 -5.3896 2.7876 42 1 3.9336 0.3074 -1.2486 43 1 3.9347 -1.2337 -2.1388 44 1 1.6768 -0.2075 -2.1392 45 1 1.6767 -1.7489 -1.2492 There are 57 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 57 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_4279154_2989410.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 19:46:08 Heat of formation + Delta-G solvation = -89.419828 kcal Electronic energy + Delta-G solvation = -24491.441562 eV Core-core repulsion = 20861.151786 eV Total energy + Delta-G solvation = -3630.289776 eV No. of doubly occupied orbitals = 57 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 306.166 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -41.61916 -40.87572 -39.50710 -38.78915 -37.32426 -35.76226 -32.72729 -32.17993 -31.79982 -31.76384 -29.55419 -26.76323 -26.05662 -24.05530 -23.75838 -22.55206 -22.02846 -21.59967 -20.72046 -19.47972 -18.59136 -18.35087 -17.45536 -17.38324 -16.92808 -16.75378 -16.02797 -15.69759 -15.59918 -15.35326 -15.20420 -15.19644 -14.95924 -14.48099 -14.27764 -14.08364 -13.98578 -13.69008 -13.54180 -13.42027 -13.22851 -13.14775 -12.55947 -12.48279 -12.18819 -12.10680 -11.95133 -11.90264 -11.77420 -11.65709 -11.30756 -11.14631 -10.91424 -10.48107 -10.15672 -10.04443 -9.22342 -4.91638 0.26164 0.30327 1.32564 1.43067 1.48204 1.62235 1.96811 2.58132 2.61791 3.40469 3.50542 3.65973 3.71820 3.78079 3.82454 3.92030 3.97320 4.03399 4.07586 4.09419 4.18713 4.29191 4.39162 4.41579 4.43381 4.44924 4.52777 4.56440 4.67860 4.76188 4.79511 4.94934 4.96119 4.99366 5.08831 5.12671 5.15269 5.18056 5.22556 5.23918 5.33257 5.39929 5.44384 5.49717 5.55772 5.68240 6.25703 6.47296 6.60243 7.13033 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.090 4.090 3 H 0.079 0.921 4 C -0.112 4.112 5 C -0.125 4.125 6 C 0.147 3.853 7 H 0.061 0.939 8 N -0.706 5.706 9 C 0.511 3.489 10 O -0.574 6.574 11 C 0.036 3.964 12 O -0.320 6.320 13 C 0.120 3.880 14 C -0.199 4.199 15 C -0.077 4.077 16 C -0.124 4.124 17 C -0.086 4.086 18 O -0.561 6.561 19 Si 0.769 3.231 20 C -0.062 4.062 21 C -0.167 4.167 22 C -0.117 4.117 23 C -0.112 4.112 24 H 0.049 0.951 25 H 0.054 0.946 26 H 0.061 0.939 27 H 0.065 0.935 28 H 0.052 0.948 29 H 0.040 0.960 30 H 0.079 0.921 31 H 0.421 0.579 32 H 0.130 0.870 33 H 0.124 0.876 34 H 0.167 0.833 35 H 0.152 0.848 36 H 0.092 0.908 37 H 0.394 0.606 38 H -0.295 1.295 39 H -0.289 1.289 40 H 0.134 0.866 41 H 0.128 0.872 42 H 0.088 0.912 43 H 0.078 0.922 44 H 0.080 0.920 45 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.957 5.243 -7.420 9.293 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.109 4.109 3 H 0.097 0.903 4 C -0.150 4.150 5 C -0.164 4.164 6 C 0.043 3.957 7 H 0.079 0.921 8 N -0.360 5.360 9 C 0.298 3.702 10 O -0.452 6.452 11 C -0.041 4.041 12 O -0.233 6.233 13 C 0.075 3.925 14 C -0.217 4.217 15 C -0.095 4.095 16 C -0.125 4.125 17 C -0.194 4.194 18 O -0.371 6.371 19 Si 0.674 3.326 20 C -0.080 4.080 21 C -0.186 4.186 22 C -0.155 4.155 23 C -0.150 4.150 24 H 0.068 0.932 25 H 0.073 0.927 26 H 0.080 0.920 27 H 0.084 0.916 28 H 0.070 0.930 29 H 0.059 0.941 30 H 0.097 0.903 31 H 0.259 0.741 32 H 0.148 0.852 33 H 0.141 0.859 34 H 0.184 0.816 35 H 0.169 0.831 36 H 0.110 0.890 37 H 0.244 0.756 38 H -0.223 1.223 39 H -0.217 1.217 40 H 0.152 0.848 41 H 0.146 0.854 42 H 0.107 0.893 43 H 0.097 0.903 44 H 0.099 0.901 45 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges 1.273 5.252 -6.812 8.695 hybrid contribution 0.710 -0.365 1.302 1.527 sum 1.983 4.887 -5.509 7.627 Atomic orbital electron populations 1.21842 0.95106 1.01721 1.02068 1.21160 0.95632 0.99865 0.94227 0.90253 1.21554 0.94286 1.00579 0.98601 1.21867 0.96334 1.01070 0.97115 1.20994 0.78581 0.99909 0.96244 0.92109 1.45782 1.07302 1.30022 1.52860 1.20590 0.89892 0.81232 0.78519 1.90762 1.71030 1.39189 1.44248 1.22762 0.90901 0.91184 0.99290 1.86127 1.19619 1.48713 1.68852 1.19200 0.81770 0.95462 0.96100 1.21484 0.93561 1.01925 1.04768 1.21023 0.95132 0.96128 0.97193 1.19462 0.94294 0.97362 1.01348 1.25042 0.95718 1.10684 0.87958 1.86551 1.30459 1.95669 1.24406 0.94217 0.76290 0.74395 0.87655 1.20919 0.91547 0.98746 0.96756 1.20623 0.95589 0.99326 1.03049 1.21772 0.96249 1.01662 0.95800 1.21570 0.94388 1.00846 0.98206 0.93164 0.92736 0.91960 0.91615 0.92954 0.94112 0.90251 0.74084 0.85248 0.85852 0.81553 0.83050 0.88983 0.75589 1.22296 1.21682 0.84782 0.85444 0.89331 0.90349 0.90143 0.92529 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 0.35 9.19 71.98 0.66 1.01 16 2 C -0.09 0.27 2.72 -10.79 -0.03 0.24 16 3 H 0.08 -0.33 8.14 -2.39 -0.02 -0.35 16 4 C -0.11 -0.01 5.20 30.60 0.16 0.15 16 5 C -0.13 -0.08 5.49 30.59 0.17 0.09 16 6 C 0.15 -0.09 2.45 44.99 0.11 0.02 16 7 H 0.06 0.35 7.58 -2.39 -0.02 0.33 16 8 N -0.71 2.39 5.08 -442.54 -2.25 0.14 16 9 C 0.51 1.96 7.87 87.66 0.69 2.65 16 10 O -0.57 -9.15 16.16 16.00 0.26 -8.89 16 11 C 0.04 -0.08 5.22 71.24 0.37 0.29 16 12 O -0.32 -2.34 9.67 -73.37 -0.71 -3.05 16 13 C 0.12 0.61 6.69 22.51 0.15 0.77 16 14 C -0.20 0.16 9.04 22.37 0.20 0.36 16 15 C -0.08 0.02 8.66 22.25 0.19 0.22 16 16 C -0.12 -0.36 5.42 -19.85 -0.11 -0.46 16 17 C -0.09 0.03 2.81 71.23 0.20 0.23 16 18 O -0.56 -1.64 12.74 -148.98 -1.90 -3.54 16 19 Si 0.77 -2.24 29.78 68.60 2.04 -0.20 16 20 C -0.06 -0.31 9.60 22.26 0.21 -0.10 16 21 C -0.17 -1.14 9.99 22.37 0.22 -0.92 16 22 C -0.12 0.69 5.39 30.61 0.17 0.86 16 23 C -0.11 0.47 5.21 30.61 0.16 0.63 16 24 H 0.05 -0.05 8.14 -2.39 -0.02 -0.07 16 25 H 0.05 -0.11 8.14 -2.39 -0.02 -0.13 16 26 H 0.06 -0.21 8.14 -2.38 -0.02 -0.23 16 27 H 0.07 0.01 8.14 -2.39 -0.02 -0.01 16 28 H 0.05 0.14 8.14 -2.39 -0.02 0.12 16 29 H 0.04 0.27 8.14 -2.38 -0.02 0.25 16 30 H 0.08 -0.18 8.14 -2.39 -0.02 -0.20 16 31 H 0.42 -4.86 8.60 -92.71 -0.80 -5.66 16 32 H 0.13 -1.22 7.65 -2.39 -0.02 -1.24 16 33 H 0.12 -1.04 7.68 -2.39 -0.02 -1.05 16 34 H 0.17 -1.44 6.30 -2.91 -0.02 -1.46 16 35 H 0.15 -0.83 4.87 -2.91 -0.01 -0.84 16 36 H 0.09 -0.36 7.96 -2.39 -0.02 -0.38 16 37 H 0.39 -2.03 8.74 -74.06 -0.65 -2.68 16 38 H -0.30 -1.11 7.11 99.48 0.71 -0.41 16 39 H -0.29 -0.47 7.11 99.48 0.71 0.24 16 40 H 0.13 0.47 8.06 -2.91 -0.02 0.45 16 41 H 0.13 0.89 8.06 -2.91 -0.02 0.87 16 42 H 0.09 -0.80 8.14 -2.39 -0.02 -0.82 16 43 H 0.08 -0.53 8.14 -2.38 -0.02 -0.55 16 44 H 0.08 -0.47 8.14 -2.38 -0.02 -0.49 16 45 H 0.06 -0.10 8.14 -2.39 -0.02 -0.12 16 Total: 0.00 -24.53 361.82 0.56 -23.97 By element: Atomic # 1 Polarization: -14.03 SS G_CDS: -0.42 Total: -14.45 kcal Atomic # 6 Polarization: 2.49 SS G_CDS: 3.53 Total: 6.02 kcal Atomic # 7 Polarization: 2.39 SS G_CDS: -2.25 Total: 0.14 kcal Atomic # 8 Polarization: -13.13 SS G_CDS: -2.35 Total: -15.48 kcal Atomic # 14 Polarization: -2.24 SS G_CDS: 2.04 Total: -0.20 kcal Total: -24.53 0.56 -23.97 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_4279154_2989410.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -65.453 kcal (2) G-P(sol) polarization free energy of solvation -24.527 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -89.981 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.561 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -23.966 kcal (6) G-S(sol) free energy of system = (1) + (5) -89.420 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds