Wall clock time and date at job start Sun Mar 7 2021 19:46:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09002 * 109.47097 * 2 1 4 4 C 1.53002 * 109.47454 * 120.00120 * 2 1 3 5 5 C 1.53001 * 109.46963 * 180.02562 * 4 2 1 6 6 C 1.53000 * 109.46886 * 299.99499 * 5 4 2 7 7 H 1.09002 * 109.47398 * 300.00496 * 6 5 4 8 8 N 1.46499 * 109.46840 * 180.02562 * 6 5 4 9 9 C 1.34781 * 119.99874 * 85.00543 * 8 6 5 10 10 O 1.21278 * 120.00033 * 359.97438 * 9 8 6 11 11 C 1.50703 * 120.00101 * 179.97438 * 9 8 6 12 12 F 1.39899 * 109.47143 * 300.00023 * 11 9 8 13 13 F 1.39900 * 109.47140 * 59.99791 * 11 9 8 14 14 O 1.42893 * 109.46977 * 179.97438 * 11 9 8 15 15 C 1.35907 * 116.99802 * 179.97438 * 14 11 9 16 16 C 1.38734 * 120.05588 * 359.73183 * 15 14 11 17 17 C 1.38141 * 119.94239 * 179.70120 * 16 15 14 18 18 C 1.38270 * 120.05829 * 0.58858 * 17 16 15 19 19 C 1.50690 * 119.94595 * 179.70346 * 18 17 16 20 20 O 1.42905 * 109.47372 * 119.98322 * 19 18 17 21 21 Si 1.86302 * 109.47357 * 359.97438 * 19 18 17 22 22 C 1.38271 * 120.10607 * 359.68605 * 18 17 16 23 23 C 1.38143 * 120.06016 * 0.02562 * 22 18 17 24 24 C 1.53002 * 109.47233 * 60.00670 * 6 5 4 25 25 C 1.52997 * 109.46978 * 240.00199 * 2 1 3 26 26 H 1.09002 * 109.46838 * 180.02562 * 1 2 3 27 27 H 1.08996 * 109.46698 * 299.99981 * 1 2 3 28 28 H 1.09001 * 109.47142 * 60.00035 * 1 2 3 29 29 H 1.09000 * 109.46497 * 300.00109 * 4 2 1 30 30 H 1.09002 * 109.47067 * 59.99861 * 4 2 1 31 31 H 1.09001 * 109.46652 * 179.97438 * 5 4 2 32 32 H 1.08992 * 109.47514 * 59.99933 * 5 4 2 33 33 H 0.97002 * 120.00410 * 264.99761 * 8 6 5 34 34 H 1.07998 * 120.02326 * 359.97438 * 16 15 14 35 35 H 1.07999 * 119.97017 * 180.27417 * 17 16 15 36 36 H 1.09006 * 109.47151 * 239.97915 * 19 18 17 37 37 H 0.96705 * 113.99543 * 300.00266 * 20 19 18 38 38 H 1.48498 * 109.99917 * 58.68064 * 21 19 18 39 39 H 1.48495 * 110.00148 * 179.97438 * 21 19 18 40 40 H 1.08004 * 119.96690 * 180.02562 * 22 18 17 41 41 H 1.07997 * 120.02656 * 180.02562 * 23 22 18 42 42 H 1.09002 * 109.47075 * 59.99068 * 24 6 5 43 43 H 1.08996 * 109.47407 * 180.02562 * 24 6 5 44 44 H 1.09001 * 109.47375 * 59.99908 * 25 2 1 45 45 H 1.09002 * 109.47497 * 299.99550 * 25 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0401 -0.7213 1.2492 5 6 3.5701 -0.7206 1.2494 6 6 4.0805 -1.4416 0.0002 7 1 3.7175 -2.4694 0.0000 8 7 5.5455 -1.4415 0.0007 9 6 6.2192 -2.3979 0.6701 10 8 5.6126 -3.2582 1.2724 11 6 7.7262 -2.3982 0.6702 12 9 8.1926 -2.5131 -0.6437 13 9 8.1928 -1.2029 1.2278 14 8 8.2022 -3.5016 1.4434 15 6 9.5495 -3.6480 1.5452 16 6 10.3959 -2.7514 0.9093 17 6 11.7650 -2.8988 1.0195 18 6 12.2921 -3.9459 1.7526 19 6 13.7860 -4.1082 1.8655 20 8 14.1704 -4.0368 3.2401 21 14 14.6321 -2.7494 0.9125 22 6 11.4506 -4.8442 2.3826 23 6 10.0808 -4.6978 2.2804 24 6 3.5705 -0.7204 -1.2491 25 6 2.0400 -0.7212 -1.2493 26 1 -0.3633 -1.0277 0.0005 27 1 -0.3632 0.5138 0.8900 28 1 -0.3633 0.5138 -0.8900 29 1 1.6767 -0.2074 2.1392 30 1 1.6768 -1.7490 1.2492 31 1 3.9335 -1.2341 2.1396 32 1 3.9331 0.3071 1.2496 33 1 6.0307 -0.7533 -0.4808 34 1 9.9847 -1.9363 0.3324 35 1 12.4243 -2.1984 0.5283 36 1 14.0784 -5.0753 1.4564 37 1 13.9407 -3.2014 3.6697 38 1 14.2171 -1.4247 1.4399 39 1 16.1060 -2.8978 1.0165 40 1 11.8647 -5.6611 2.9550 41 1 9.4240 -5.3994 2.7730 42 1 3.9334 0.3075 -1.2488 43 1 3.9337 -1.2342 -2.1391 44 1 1.6766 -0.2074 -2.1392 45 1 1.6767 -1.7489 -1.2493 There are 63 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 63 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_22_4279154_4549640.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 19:46:43 Heat of formation + Delta-G solvation = -185.641840 kcal Electronic energy + Delta-G solvation = -30330.372415 eV Core-core repulsion = 25757.002187 eV Total energy + Delta-G solvation = -4573.370227 eV No. of doubly occupied orbitals = 63 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 342.148 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -50.79934 -48.77562 -41.47692 -41.21753 -39.65719 -39.12245 -37.34030 -36.05858 -32.64096 -32.36167 -31.96286 -31.92490 -29.09628 -27.00019 -26.08994 -24.45443 -23.94785 -22.93056 -22.45996 -22.01673 -21.08456 -20.45349 -19.74300 -19.58179 -18.59311 -17.69376 -17.44073 -17.02813 -16.72568 -16.40313 -16.23917 -15.92871 -15.77425 -15.50220 -15.39561 -15.36820 -15.33909 -15.24745 -15.05244 -15.01583 -14.39549 -14.33646 -14.32435 -14.13901 -13.88438 -13.48572 -13.39024 -13.31955 -12.97214 -12.73335 -12.36398 -12.26692 -12.23434 -12.13359 -11.89719 -11.69891 -11.50619 -11.37839 -11.22663 -10.64940 -10.46568 -10.14413 -9.52285 -4.99246 0.07999 0.19607 0.53912 0.76059 1.25012 1.56567 1.78568 1.93755 2.06198 2.50068 2.77139 3.31095 3.33726 3.44799 3.53487 3.55447 3.66053 3.72615 3.74675 3.89514 3.99542 4.11452 4.20828 4.22459 4.25849 4.34360 4.37873 4.42554 4.54778 4.57396 4.61387 4.78470 4.80079 4.83456 4.87577 4.94654 4.96136 5.01424 5.04884 5.08903 5.10026 5.23176 5.24753 5.37406 5.39778 5.42487 5.82588 5.90335 6.37101 6.45699 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.096 4.096 3 H 0.072 0.928 4 C -0.112 4.112 5 C -0.132 4.132 6 C 0.145 3.855 7 H 0.097 0.903 8 N -0.701 5.701 9 C 0.516 3.484 10 O -0.468 6.468 11 C 0.431 3.569 12 F -0.174 7.174 13 F -0.175 7.175 14 O -0.286 6.286 15 C 0.107 3.893 16 C -0.187 4.187 17 C -0.077 4.077 18 C -0.141 4.141 19 C -0.071 4.071 20 O -0.529 6.529 21 Si 0.682 3.318 22 C -0.056 4.056 23 C -0.127 4.127 24 C -0.127 4.127 25 C -0.111 4.111 26 H 0.056 0.944 27 H 0.056 0.944 28 H 0.056 0.944 29 H 0.069 0.931 30 H 0.067 0.933 31 H 0.070 0.930 32 H 0.069 0.931 33 H 0.409 0.591 34 H 0.136 0.864 35 H 0.135 0.865 36 H 0.121 0.879 37 H 0.377 0.623 38 H -0.260 1.260 39 H -0.255 1.255 40 H 0.140 0.860 41 H 0.141 0.859 42 H 0.072 0.928 43 H 0.074 0.926 44 H 0.072 0.928 45 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.178 3.276 -3.997 5.608 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.114 4.114 3 H 0.090 0.910 4 C -0.150 4.150 5 C -0.171 4.171 6 C 0.042 3.958 7 H 0.115 0.885 8 N -0.354 5.354 9 C 0.294 3.706 10 O -0.338 6.338 11 C 0.353 3.647 12 F -0.156 7.156 13 F -0.157 7.157 14 O -0.202 6.202 15 C 0.064 3.936 16 C -0.205 4.205 17 C -0.094 4.094 18 C -0.141 4.141 19 C -0.181 4.181 20 O -0.336 6.336 21 Si 0.583 3.417 22 C -0.074 4.074 23 C -0.145 4.145 24 C -0.165 4.165 25 C -0.149 4.149 26 H 0.075 0.925 27 H 0.075 0.925 28 H 0.075 0.925 29 H 0.088 0.912 30 H 0.086 0.914 31 H 0.089 0.911 32 H 0.087 0.913 33 H 0.244 0.756 34 H 0.154 0.846 35 H 0.152 0.848 36 H 0.138 0.862 37 H 0.224 0.776 38 H -0.184 1.184 39 H -0.180 1.180 40 H 0.158 0.842 41 H 0.159 0.841 42 H 0.091 0.909 43 H 0.092 0.908 44 H 0.090 0.910 45 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -1.995 2.625 -3.577 4.865 hybrid contribution 0.296 0.906 0.742 1.208 sum -1.699 3.531 -2.836 4.837 Atomic orbital electron populations 1.21832 0.94820 1.02080 1.01941 1.21205 0.95905 0.99725 0.94593 0.90969 1.21567 0.94026 1.01352 0.98058 1.21957 0.96511 1.01018 0.97594 1.21293 0.76334 1.01977 0.96197 0.88497 1.45953 1.08432 1.29165 1.51828 1.19316 0.85657 0.83806 0.81834 1.90873 1.66891 1.35659 1.40395 1.21874 0.91581 0.76236 0.74978 1.93191 1.90087 1.95344 1.36958 1.93191 1.90094 1.47339 1.85056 1.86676 1.21716 1.44874 1.66978 1.18996 0.80249 0.96507 0.97832 1.21468 0.94492 1.00915 1.03652 1.20799 0.94280 0.96964 0.97391 1.20317 0.96488 0.96711 1.00634 1.24984 0.93201 1.11732 0.88208 1.86605 1.82901 1.41604 1.22444 0.95059 0.80105 0.76613 0.89945 1.20896 0.91335 0.98261 0.96893 1.20541 0.95482 0.97582 1.00894 1.21848 0.97049 1.01088 0.96559 1.21565 0.93538 1.01519 0.98271 0.92517 0.92516 0.92521 0.91236 0.91420 0.91112 0.91269 0.75560 0.84629 0.84820 0.86166 0.77582 1.18441 1.18037 0.84229 0.84134 0.90885 0.90759 0.90979 0.91337 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 0.29 9.19 37.16 0.34 0.63 16 2 C -0.10 0.21 2.72 -90.62 -0.25 -0.03 16 3 H 0.07 -0.16 8.14 -51.93 -0.42 -0.58 16 4 C -0.11 0.17 5.20 -26.73 -0.14 0.04 16 5 C -0.13 0.15 5.49 -26.73 -0.15 0.00 16 6 C 0.14 -0.20 2.45 -67.93 -0.17 -0.37 16 7 H 0.10 0.01 7.58 -51.93 -0.39 -0.38 16 8 N -0.70 0.85 5.08 -53.80 -0.27 0.58 16 9 C 0.52 0.98 7.31 -10.98 -0.08 0.90 16 10 O -0.47 -2.42 16.16 -14.35 -0.23 -2.65 16 11 C 0.43 0.78 2.05 36.01 0.07 0.86 16 12 F -0.17 -0.18 15.27 2.25 0.03 -0.14 16 13 F -0.18 -0.22 15.31 2.25 0.03 -0.18 16 14 O -0.29 -1.06 9.60 -39.36 -0.38 -1.44 16 15 C 0.11 0.29 6.48 -39.21 -0.25 0.04 16 16 C -0.19 -0.29 8.26 -39.43 -0.33 -0.61 16 17 C -0.08 -0.02 8.66 -39.61 -0.34 -0.37 16 18 C -0.14 -0.05 5.39 -104.60 -0.56 -0.61 16 19 C -0.07 0.02 2.82 36.00 0.10 0.12 16 20 O -0.53 -0.58 12.77 -35.23 -0.45 -1.03 16 21 Si 0.68 -0.66 29.78 -169.99 -5.06 -5.73 16 22 C -0.06 -0.04 9.60 -39.60 -0.38 -0.42 16 23 C -0.13 -0.21 9.99 -39.43 -0.39 -0.60 16 24 C -0.13 0.39 5.39 -26.70 -0.14 0.25 16 25 C -0.11 0.30 5.21 -26.70 -0.14 0.16 16 26 H 0.06 -0.10 8.14 -51.93 -0.42 -0.52 16 27 H 0.06 -0.10 8.14 -51.93 -0.42 -0.52 16 28 H 0.06 -0.11 8.14 -51.93 -0.42 -0.54 16 29 H 0.07 -0.10 8.14 -51.93 -0.42 -0.53 16 30 H 0.07 -0.07 8.14 -51.93 -0.42 -0.49 16 31 H 0.07 0.05 8.14 -51.93 -0.42 -0.37 16 32 H 0.07 -0.12 8.14 -51.93 -0.42 -0.54 16 33 H 0.41 -1.49 8.60 -40.82 -0.35 -1.84 16 34 H 0.14 0.09 5.10 -52.49 -0.27 -0.17 16 35 H 0.13 -0.23 4.87 -52.49 -0.26 -0.49 16 36 H 0.12 -0.14 7.96 -51.93 -0.41 -0.56 16 37 H 0.38 -0.60 8.70 45.56 0.40 -0.20 16 38 H -0.26 -0.26 7.11 56.52 0.40 0.14 16 39 H -0.26 -0.59 7.11 56.52 0.40 -0.19 16 40 H 0.14 -0.06 8.06 -52.48 -0.42 -0.49 16 41 H 0.14 0.08 8.06 -52.49 -0.42 -0.34 16 42 H 0.07 -0.28 8.14 -51.93 -0.42 -0.70 16 43 H 0.07 -0.24 8.14 -51.93 -0.42 -0.67 16 44 H 0.07 -0.21 8.14 -51.93 -0.42 -0.63 16 45 H 0.07 -0.16 8.14 -51.93 -0.42 -0.58 16 LS Contribution 371.05 15.07 5.59 5.59 Total: 0.00 -6.27 371.05 -9.94 -16.22 By element: Atomic # 1 Polarization: -4.79 SS G_CDS: -6.40 Total: -11.19 kcal Atomic # 6 Polarization: 2.78 SS G_CDS: -2.81 Total: -0.03 kcal Atomic # 7 Polarization: 0.85 SS G_CDS: -0.27 Total: 0.58 kcal Atomic # 8 Polarization: -4.06 SS G_CDS: -1.06 Total: -5.12 kcal Atomic # 9 Polarization: -0.39 SS G_CDS: 0.07 Total: -0.32 kcal Atomic # 14 Polarization: -0.66 SS G_CDS: -5.06 Total: -5.73 kcal Total LS contribution 5.59 Total: 5.59 kcal Total: -6.27 -9.94 -16.22 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_4279154_4549640.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -169.426 kcal (2) G-P(sol) polarization free energy of solvation -6.272 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -175.698 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.944 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -16.216 kcal (6) G-S(sol) free energy of system = (1) + (5) -185.642 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds