Wall clock time and date at job start Sun Mar 7 2021 19:47:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08992 * 109.47280 * 2 1 4 4 C 1.53002 * 109.46978 * 119.99927 * 2 1 3 5 5 C 1.52997 * 109.46978 * 180.02562 * 4 2 1 6 6 C 1.53006 * 109.47164 * 299.99874 * 5 4 2 7 7 H 1.08998 * 109.46505 * 299.99708 * 6 5 4 8 8 N 1.46500 * 109.47249 * 180.02562 * 6 5 4 9 9 C 1.34770 * 120.00256 * 84.99846 * 8 6 5 10 10 O 1.21696 * 120.00262 * 359.97438 * 9 8 6 11 11 C 1.46677 * 120.00037 * 179.97438 * 9 8 6 12 12 C 1.37871 * 126.23212 * 179.68498 * 11 9 8 13 13 C 1.39840 * 107.08576 * 179.84937 * 12 11 9 14 14 C 1.35457 * 107.86368 * 0.42062 * 13 12 11 15 15 C 1.50693 * 125.56375 * 179.76176 * 14 13 12 16 16 O 1.42906 * 109.47122 * 244.97508 * 15 14 13 17 17 Si 1.86292 * 109.47432 * 4.97553 * 15 14 13 18 18 N 1.35539 * 108.86715 * 359.73815 * 14 13 12 19 19 C 1.52997 * 109.47127 * 59.99836 * 6 5 4 20 20 C 1.52996 * 109.46975 * 239.99465 * 2 1 3 21 21 H 1.09001 * 109.47375 * 180.02562 * 1 2 3 22 22 H 1.09002 * 109.47045 * 300.00240 * 1 2 3 23 23 H 1.09000 * 109.47140 * 60.00147 * 1 2 3 24 24 H 1.09002 * 109.47097 * 299.99801 * 4 2 1 25 25 H 1.09001 * 109.47142 * 59.99766 * 4 2 1 26 26 H 1.09001 * 109.47375 * 59.99908 * 5 4 2 27 27 H 1.09000 * 109.47140 * 179.97438 * 5 4 2 28 28 H 0.97005 * 119.99374 * 264.99912 * 8 6 5 29 29 H 1.08002 * 126.46088 * 0.02562 * 12 11 9 30 30 H 1.07999 * 126.07247 * 180.16313 * 13 12 11 31 31 H 1.09006 * 109.47204 * 124.97799 * 15 14 13 32 32 H 0.96698 * 113.99905 * 180.02562 * 16 15 14 33 33 H 1.48505 * 110.00035 * 178.68063 * 17 15 14 34 34 H 1.48503 * 109.99962 * 300.00041 * 17 15 14 35 35 H 0.96999 * 125.67285 * 180.02562 * 18 14 13 36 36 H 1.09002 * 109.47153 * 180.02562 * 19 6 5 37 37 H 1.09001 * 109.46832 * 60.00321 * 19 6 5 38 38 H 1.09004 * 109.47368 * 60.00217 * 20 2 1 39 39 H 1.09001 * 109.47372 * 300.00372 * 20 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0399 -0.7212 1.2493 5 6 3.5699 -0.7207 1.2496 6 6 4.0805 -1.4416 0.0003 7 1 3.7175 -2.4694 0.0003 8 7 5.5455 -1.4416 0.0009 9 6 6.2191 -2.3979 0.6704 10 8 5.6104 -3.2611 1.2749 11 6 7.6859 -2.3981 0.6705 12 6 8.5005 -3.3058 1.3134 13 6 9.8217 -2.9338 1.0455 14 6 9.7916 -1.8245 0.2688 15 6 10.9978 -1.0848 -0.2498 16 8 11.0379 0.2231 0.3248 17 14 12.5437 -2.0147 0.2146 18 7 8.4997 -1.4888 0.0338 19 6 3.5704 -0.7205 -1.2489 20 6 2.0399 -0.7214 -1.2492 21 1 -0.3634 -1.0277 0.0005 22 1 -0.3633 0.5139 0.8900 23 1 -0.3633 0.5138 -0.8900 24 1 1.6766 -0.2074 2.1393 25 1 1.6766 -1.7489 1.2493 26 1 3.9329 0.3071 1.2498 27 1 3.9332 -1.2341 2.1398 28 1 6.0306 -0.7533 -0.4806 29 1 8.1790 -4.1473 1.9091 30 1 10.7086 -3.4387 1.3989 31 1 10.9350 -1.0031 -1.3350 32 1 11.7899 0.7572 0.0346 33 1 13.7385 -1.3121 -0.3185 34 1 12.6410 -2.1329 1.6917 35 1 8.1987 -0.7337 -0.4954 36 1 3.9338 -1.2343 -2.1389 37 1 3.9335 0.3073 -1.2487 38 1 1.6766 -0.2076 -2.1392 39 1 1.6765 -1.7490 -1.2491 There are 49 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 49 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_22_4279154_6580494.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 19:47:12 Heat of formation + Delta-G solvation = -41.774643 kcal Electronic energy + Delta-G solvation = -20144.905339 eV Core-core repulsion = 17053.701653 eV Total energy + Delta-G solvation = -3091.203686 eV No. of doubly occupied orbitals = 49 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 265.146 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -42.45127 -40.73757 -39.11471 -37.89722 -35.71188 -32.71455 -31.89253 -31.82680 -31.21010 -27.55134 -26.20169 -23.83397 -23.29782 -22.07870 -21.38606 -21.23064 -20.74437 -19.46347 -18.74753 -17.32682 -16.91135 -16.34766 -16.01464 -15.77416 -15.30918 -15.26263 -15.06465 -14.86056 -14.69912 -14.15283 -14.11736 -13.96780 -13.56132 -13.50680 -13.26496 -13.20490 -12.75034 -12.60781 -12.16129 -12.00631 -11.97693 -11.73909 -11.37594 -11.18181 -10.98221 -10.73328 -10.11557 -10.01395 -9.19859 -4.99427 0.41181 1.10131 1.53375 1.59909 1.88537 2.04454 2.15566 2.45516 3.12103 3.57549 3.64878 3.69523 3.77780 3.91229 4.01850 4.05541 4.13879 4.32473 4.33696 4.40921 4.45274 4.47190 4.50141 4.70153 4.72502 4.86709 4.93013 4.98049 5.04710 5.09211 5.12857 5.15571 5.20462 5.26262 5.34172 5.43661 5.49722 5.68089 5.88046 6.19771 6.27433 6.48379 7.18632 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.095 4.095 3 H 0.070 0.930 4 C -0.112 4.112 5 C -0.130 4.130 6 C 0.147 3.853 7 H 0.092 0.908 8 N -0.730 5.730 9 C 0.591 3.409 10 O -0.523 6.523 11 C -0.051 4.051 12 C -0.097 4.097 13 C -0.196 4.196 14 C 0.068 3.932 15 C -0.062 4.062 16 O -0.541 6.541 17 Si 0.715 3.285 18 N -0.525 5.525 19 C -0.127 4.127 20 C -0.111 4.111 21 H 0.056 0.944 22 H 0.055 0.945 23 H 0.055 0.945 24 H 0.066 0.934 25 H 0.066 0.934 26 H 0.063 0.937 27 H 0.069 0.931 28 H 0.393 0.607 29 H 0.154 0.846 30 H 0.151 0.849 31 H 0.077 0.923 32 H 0.384 0.616 33 H -0.260 1.260 34 H -0.250 1.250 35 H 0.415 0.585 36 H 0.069 0.931 37 H 0.067 0.933 38 H 0.068 0.932 39 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.711 2.103 -4.704 5.429 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.113 4.113 3 H 0.088 0.912 4 C -0.150 4.150 5 C -0.168 4.168 6 C 0.043 3.957 7 H 0.110 0.890 8 N -0.380 5.380 9 C 0.379 3.621 10 O -0.399 6.399 11 C -0.164 4.164 12 C -0.124 4.124 13 C -0.221 4.221 14 C -0.050 4.050 15 C -0.171 4.171 16 O -0.349 6.349 17 Si 0.613 3.387 18 N -0.121 5.121 19 C -0.165 4.165 20 C -0.149 4.149 21 H 0.075 0.925 22 H 0.074 0.926 23 H 0.074 0.926 24 H 0.085 0.915 25 H 0.085 0.915 26 H 0.081 0.919 27 H 0.088 0.912 28 H 0.226 0.774 29 H 0.172 0.828 30 H 0.169 0.831 31 H 0.095 0.905 32 H 0.233 0.767 33 H -0.185 1.185 34 H -0.174 1.174 35 H 0.252 0.748 36 H 0.088 0.912 37 H 0.086 0.914 38 H 0.087 0.913 39 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges 1.370 1.400 -3.626 4.121 hybrid contribution 0.209 2.103 -0.603 2.198 sum 1.579 3.503 -4.229 5.714 Atomic orbital electron populations 1.21834 0.94928 1.02048 1.01842 1.21186 0.95781 0.99620 0.94740 0.91167 1.21565 0.94465 1.01199 0.97795 1.21929 0.96089 1.00669 0.98158 1.21051 0.78186 1.01289 0.95191 0.88994 1.45996 1.07703 1.30407 1.53924 1.17043 0.84830 0.81399 0.78847 1.90869 1.68313 1.37326 1.43369 1.20460 0.90310 0.97661 1.07963 1.21316 0.91317 0.99389 1.00366 1.20676 0.98082 0.99096 1.04213 1.19833 0.83692 0.97911 1.03518 1.24596 1.04277 0.88620 0.99629 1.86586 1.51576 1.24883 1.71868 0.94294 0.73037 0.88380 0.82963 1.41911 1.05600 1.23901 1.40686 1.21827 0.96874 1.00776 0.96999 1.21556 0.93865 1.01395 0.98072 0.92519 0.92561 0.92605 0.91502 0.91500 0.91871 0.91208 0.77399 0.82839 0.83120 0.90531 0.76726 1.18469 1.17353 0.74761 0.91195 0.91418 0.91285 0.91411 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 0.14 9.19 37.16 0.34 0.48 16 2 C -0.09 0.09 2.72 -90.62 -0.25 -0.16 16 3 H 0.07 -0.06 8.14 -51.93 -0.42 -0.48 16 4 C -0.11 0.01 5.20 -26.73 -0.14 -0.13 16 5 C -0.13 -0.08 5.49 -26.73 -0.15 -0.23 16 6 C 0.15 0.04 2.45 -67.93 -0.17 -0.12 16 7 H 0.09 0.21 7.57 -51.93 -0.39 -0.19 16 8 N -0.73 -0.12 5.07 -55.11 -0.28 -0.40 16 9 C 0.59 1.94 7.75 -12.86 -0.10 1.84 16 10 O -0.52 -3.62 16.54 5.19 0.09 -3.54 16 11 C -0.05 -0.12 7.06 -81.98 -0.58 -0.70 16 12 C -0.10 -0.25 10.65 -39.12 -0.42 -0.67 16 13 C -0.20 -0.23 9.32 -39.98 -0.37 -0.61 16 14 C 0.07 0.04 6.50 -81.95 -0.53 -0.49 16 15 C -0.06 0.09 3.07 36.00 0.11 0.20 16 16 O -0.54 0.15 12.86 -35.23 -0.45 -0.30 16 17 Si 0.71 -1.44 30.56 -169.99 -5.19 -6.63 16 18 N -0.52 -0.08 5.99 -5.70 -0.03 -0.11 16 19 C -0.13 0.20 5.39 -26.71 -0.14 0.06 16 20 C -0.11 0.15 5.21 -26.71 -0.14 0.01 16 21 H 0.06 -0.04 8.14 -51.93 -0.42 -0.47 16 22 H 0.06 -0.05 8.14 -51.93 -0.42 -0.47 16 23 H 0.05 -0.06 8.14 -51.93 -0.42 -0.49 16 24 H 0.07 -0.01 8.14 -51.93 -0.42 -0.43 16 25 H 0.07 0.03 8.14 -51.93 -0.42 -0.39 16 26 H 0.06 0.01 8.14 -51.93 -0.42 -0.41 16 27 H 0.07 0.19 8.14 -51.93 -0.42 -0.23 16 28 H 0.39 -0.97 7.73 -40.82 -0.32 -1.29 16 29 H 0.15 0.33 8.06 -52.49 -0.42 -0.10 16 30 H 0.15 -0.11 6.19 -52.49 -0.32 -0.44 16 31 H 0.08 -0.26 7.96 -51.93 -0.41 -0.68 16 32 H 0.38 -1.63 8.74 45.56 0.40 -1.24 16 33 H -0.26 0.06 7.11 56.52 0.40 0.46 16 34 H -0.25 -0.34 7.11 56.52 0.40 0.06 16 35 H 0.42 -1.01 8.19 -40.82 -0.33 -1.34 16 36 H 0.07 -0.13 8.14 -51.93 -0.42 -0.55 16 37 H 0.07 -0.15 8.14 -51.93 -0.42 -0.58 16 38 H 0.07 -0.12 8.14 -51.93 -0.42 -0.54 16 39 H 0.07 -0.06 8.14 -51.93 -0.42 -0.49 16 LS Contribution 317.41 15.07 4.78 4.78 Total: 0.00 -7.29 317.41 -9.70 -16.99 By element: Atomic # 1 Polarization: -4.19 SS G_CDS: -6.08 Total: -10.27 kcal Atomic # 6 Polarization: 2.02 SS G_CDS: -2.53 Total: -0.51 kcal Atomic # 7 Polarization: -0.20 SS G_CDS: -0.31 Total: -0.51 kcal Atomic # 8 Polarization: -3.48 SS G_CDS: -0.37 Total: -3.84 kcal Atomic # 14 Polarization: -1.44 SS G_CDS: -5.19 Total: -6.63 kcal Total LS contribution 4.78 Total: 4.78 kcal Total: -7.29 -9.70 -16.99 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_4279154_6580494.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -24.785 kcal (2) G-P(sol) polarization free energy of solvation -7.291 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.076 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.699 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -16.990 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.775 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds