Wall clock time and date at job start Mon Mar 8 2021 02:31:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 O 1.42898 * 109.47351 * 2 1 4 4 C 1.35905 * 116.99652 * 275.32445 * 3 2 1 5 5 C 1.38733 * 120.05675 * 5.08761 * 4 3 2 6 6 C 1.38142 * 119.94262 * 179.70110 * 5 4 3 7 7 C 1.38265 * 120.05695 * 0.59038 * 6 5 4 8 8 C 1.50701 * 119.94943 * 179.70054 * 7 6 5 9 9 O 1.42893 * 109.47192 * 119.97544 * 8 7 6 10 10 Si 1.86308 * 109.46663 * 359.97438 * 8 7 6 11 11 C 1.38267 * 120.11251 * 359.68479 * 7 6 5 12 12 C 1.38149 * 120.05408 * 0.02562 * 11 7 6 13 13 C 1.50696 * 109.47017 * 120.00054 * 2 1 3 14 14 O 1.21287 * 120.00001 * 244.99679 * 13 2 1 15 15 N 1.34769 * 120.00470 * 64.99688 * 13 2 1 16 16 C 1.46503 * 120.00549 * 179.97438 * 15 13 2 17 17 H 1.09007 * 109.46389 * 35.00442 * 16 15 13 18 18 C 1.53000 * 109.47553 * 154.99914 * 16 15 13 19 19 C 1.53007 * 109.46860 * 60.00340 * 18 16 15 20 20 C 1.52997 * 109.47009 * 59.99923 * 19 18 16 21 21 H 1.09001 * 109.47166 * 60.00111 * 20 19 18 22 22 C 1.52997 * 109.47030 * 179.97438 * 20 19 18 23 23 O 1.42904 * 109.46841 * 185.00274 * 22 20 19 24 24 C 1.53003 * 109.47219 * 300.00102 * 20 19 18 25 25 C 1.52997 * 109.47178 * 275.00520 * 16 15 13 26 26 H 1.09001 * 109.47379 * 60.00078 * 1 2 3 27 27 H 1.08994 * 109.47248 * 180.02562 * 1 2 3 28 28 H 1.09001 * 109.47165 * 300.00305 * 1 2 3 29 29 H 1.08998 * 109.46673 * 239.99775 * 2 1 3 30 30 H 1.07993 * 120.02729 * 359.97438 * 5 4 3 31 31 H 1.07998 * 119.97237 * 180.26919 * 6 5 4 32 32 H 1.08996 * 109.47367 * 239.98647 * 8 7 6 33 33 H 0.96701 * 114.00257 * 180.02562 * 9 8 7 34 34 H 1.48500 * 109.99855 * 298.67576 * 10 8 7 35 35 H 1.48494 * 110.00058 * 59.99967 * 10 8 7 36 36 H 1.07997 * 119.97969 * 180.02562 * 11 7 6 37 37 H 1.07997 * 120.02808 * 179.97438 * 12 11 7 38 38 H 0.97006 * 119.99877 * 0.02562 * 15 13 2 39 39 H 1.08998 * 109.47181 * 300.00600 * 18 16 15 40 40 H 1.08997 * 109.47595 * 180.02562 * 18 16 15 41 41 H 1.09001 * 109.47066 * 299.99973 * 19 18 16 42 42 H 1.08993 * 109.47178 * 180.02562 * 19 18 16 43 43 H 1.08996 * 109.47508 * 65.00410 * 22 20 19 44 44 H 1.08994 * 109.47491 * 304.99898 * 22 20 19 45 45 H 0.96702 * 113.99780 * 180.02562 * 23 22 20 46 46 H 1.09007 * 109.47102 * 179.97438 * 24 20 19 47 47 H 1.08997 * 109.47396 * 299.99727 * 24 20 19 48 48 H 1.08993 * 109.47352 * 59.99661 * 25 16 15 49 49 H 1.09001 * 109.47166 * 179.97438 * 25 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0064 1.3472 0.0000 4 6 2.1061 1.9663 -1.2057 5 6 1.6543 1.3302 -2.3529 6 6 1.7512 1.9642 -3.5764 7 6 2.3089 3.2266 -3.6600 8 6 2.4196 3.9132 -4.9970 9 8 1.6856 5.1388 -4.9652 10 14 1.7223 2.8059 -6.3232 11 6 2.7651 3.8604 -2.5190 12 6 2.6651 3.2331 -1.2922 13 6 2.0323 -0.7104 1.2304 14 8 2.6530 -0.0979 2.0734 15 7 1.7918 -2.0263 1.3942 16 6 2.2806 -2.7171 2.5901 17 1 2.2338 -2.0416 3.4444 18 6 1.4088 -3.9446 2.8623 19 6 1.4744 -4.8927 1.6632 20 6 2.9223 -5.3345 1.4410 21 1 3.2860 -5.8484 2.3308 22 6 2.9878 -6.2831 0.2424 23 8 4.3181 -6.7868 0.1058 24 6 3.7941 -4.1069 1.1689 25 6 3.7285 -3.1589 2.3680 26 1 -0.3634 0.5138 -0.8900 27 1 -0.3633 -1.0276 0.0005 28 1 -0.3633 0.5139 0.8900 29 1 1.8932 -0.5139 -0.8900 30 1 1.2233 0.3421 -2.2888 31 1 1.3957 1.4713 -4.4692 32 1 3.4673 4.1225 -5.2124 33 1 1.7124 5.6350 -5.7948 34 1 2.4974 1.5409 -6.3879 35 1 0.2942 2.5128 -6.0412 36 1 3.2000 4.8466 -2.5867 37 1 3.0219 3.7284 -0.4013 38 1 1.2957 -2.5163 0.7199 39 1 0.3774 -3.6298 3.0206 40 1 1.7722 -4.4583 3.7523 41 1 1.1107 -4.3788 0.7734 42 1 0.8531 -5.7670 1.8568 43 1 2.7086 -5.7443 -0.6631 44 1 2.2991 -7.1134 0.3980 45 1 4.4337 -7.3960 -0.6363 46 1 4.8257 -4.4217 1.0111 47 1 3.4305 -3.5930 0.2791 48 1 4.3495 -2.2844 2.1741 49 1 4.0923 -3.6724 3.2579 There are 63 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 63 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_7207534_10157680.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 02:31:24 Heat of formation + Delta-G solvation = -134.539310 kcal Electronic energy + Delta-G solvation = -29636.671446 eV Core-core repulsion = 25530.205331 eV Total energy + Delta-G solvation = -4106.466115 eV No. of doubly occupied orbitals = 63 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 336.182 amu Computer time = 1.15 seconds Orbital eigenvalues (eV) -42.00765 -41.13499 -39.79025 -38.91166 -37.50197 -37.20963 -35.06491 -33.55975 -32.18280 -31.88378 -31.83380 -31.04027 -26.86120 -26.47332 -25.40079 -24.32488 -23.71478 -22.67462 -22.12885 -21.66300 -20.29966 -19.61248 -18.82060 -18.33225 -18.19987 -17.40158 -17.04736 -16.82912 -16.71267 -16.45366 -15.93987 -15.85857 -15.78051 -15.48581 -15.26992 -14.98609 -14.73970 -14.59668 -14.35244 -14.02919 -13.97368 -13.81527 -13.56819 -13.47565 -13.44789 -13.24078 -13.08752 -12.99067 -12.52166 -12.46799 -12.22469 -12.17556 -12.00546 -11.88225 -11.60588 -11.36668 -11.14860 -10.98679 -10.83918 -10.29997 -10.21465 -10.20586 -9.33939 -4.92647 0.09199 0.13928 1.31794 1.34642 1.41356 1.65204 1.96675 2.40480 2.47970 3.28217 3.33351 3.41899 3.51487 3.61888 3.62970 3.67766 3.70801 3.75501 3.86838 3.92474 4.00371 4.10052 4.23144 4.24853 4.36963 4.37510 4.38894 4.44342 4.45775 4.49531 4.52102 4.59676 4.62676 4.70304 4.71705 4.78731 4.96440 4.97886 5.00868 5.04404 5.05461 5.06732 5.11521 5.18089 5.34130 5.34962 5.37854 5.44285 5.54603 6.12922 6.36953 6.87748 6.92745 7.03396 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C 0.061 3.939 3 O -0.309 6.309 4 C 0.122 3.878 5 C -0.203 4.203 6 C -0.097 4.097 7 C -0.128 4.128 8 C -0.078 4.078 9 O -0.565 6.565 10 Si 0.774 3.226 11 C -0.054 4.054 12 C -0.161 4.161 13 C 0.517 3.483 14 O -0.568 6.568 15 N -0.699 5.699 16 C 0.148 3.852 17 H 0.070 0.930 18 C -0.119 4.119 19 C -0.110 4.110 20 C -0.088 4.088 21 H 0.068 0.932 22 C 0.076 3.924 23 O -0.599 6.599 24 C -0.101 4.101 25 C -0.130 4.130 26 H 0.081 0.919 27 H 0.112 0.888 28 H 0.062 0.938 29 H 0.122 0.878 30 H 0.158 0.842 31 H 0.127 0.873 32 H 0.092 0.908 33 H 0.403 0.597 34 H -0.286 1.286 35 H -0.294 1.294 36 H 0.146 0.854 37 H 0.136 0.864 38 H 0.415 0.585 39 H 0.086 0.914 40 H 0.085 0.915 41 H 0.077 0.923 42 H 0.085 0.915 43 H 0.055 0.945 44 H 0.058 0.942 45 H 0.395 0.605 46 H 0.050 0.950 47 H 0.063 0.937 48 H 0.041 0.959 49 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.897 -4.715 -7.331 9.548 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.230 4.230 2 C 0.002 3.998 3 O -0.222 6.222 4 C 0.076 3.924 5 C -0.221 4.221 6 C -0.114 4.114 7 C -0.129 4.129 8 C -0.187 4.187 9 O -0.375 6.375 10 Si 0.680 3.320 11 C -0.072 4.072 12 C -0.180 4.180 13 C 0.303 3.697 14 O -0.446 6.446 15 N -0.354 5.354 16 C 0.043 3.957 17 H 0.088 0.912 18 C -0.156 4.156 19 C -0.147 4.147 20 C -0.106 4.106 21 H 0.086 0.914 22 C -0.002 4.002 23 O -0.407 6.407 24 C -0.139 4.139 25 C -0.169 4.169 26 H 0.100 0.900 27 H 0.131 0.869 28 H 0.081 0.919 29 H 0.139 0.861 30 H 0.175 0.825 31 H 0.144 0.856 32 H 0.110 0.890 33 H 0.254 0.746 34 H -0.213 1.213 35 H -0.222 1.222 36 H 0.164 0.836 37 H 0.153 0.847 38 H 0.254 0.746 39 H 0.105 0.895 40 H 0.104 0.896 41 H 0.096 0.904 42 H 0.104 0.896 43 H 0.073 0.927 44 H 0.076 0.924 45 H 0.244 0.756 46 H 0.069 0.931 47 H 0.081 0.919 48 H 0.060 0.940 49 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -3.800 -4.795 -5.585 8.284 hybrid contribution 0.210 -0.443 0.010 0.490 sum -3.590 -5.238 -5.575 8.451 Atomic orbital electron populations 1.22368 0.90432 1.05837 1.04320 1.22456 0.97310 0.82082 0.97961 1.86201 1.81414 1.27068 1.27563 1.19192 0.95836 0.93131 0.84199 1.21378 1.06623 1.02606 0.91532 1.20856 0.98134 0.95073 0.97353 1.19687 1.02280 0.95105 0.95778 1.24816 1.00784 0.93181 0.99932 1.86441 1.74090 1.34500 1.42493 0.94322 0.76139 0.77561 0.84022 1.21005 0.96355 0.99621 0.90264 1.20739 1.03736 0.94062 0.99442 1.20433 0.79130 0.82903 0.87252 1.90749 1.41460 1.67134 1.45215 1.45844 1.57216 1.07637 1.24676 1.20977 0.93572 0.93967 0.87149 0.91219 1.21785 1.00287 0.93915 0.99650 1.21520 0.94719 0.99978 0.98502 1.21180 0.96383 0.94948 0.98111 0.91360 1.22329 0.83433 0.96567 0.97853 1.86448 1.30730 1.67276 1.56237 1.21398 0.99915 0.95139 0.97452 1.21893 0.96322 0.98839 0.99812 0.89978 0.86940 0.91902 0.86056 0.82486 0.85559 0.89040 0.74593 1.21278 1.22173 0.83585 0.84650 0.74583 0.89538 0.89607 0.90424 0.89621 0.92677 0.92386 0.75564 0.93081 0.91880 0.94041 0.90565 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 0.60 9.12 71.98 0.66 1.26 16 2 C 0.06 0.11 2.64 29.85 0.08 0.19 16 3 O -0.31 -3.06 9.34 -73.49 -0.69 -3.74 16 4 C 0.12 0.98 6.60 22.51 0.15 1.13 16 5 C -0.20 -0.81 8.23 22.37 0.18 -0.63 16 6 C -0.10 -0.49 8.66 22.25 0.19 -0.30 16 7 C -0.13 -0.71 5.42 -19.85 -0.11 -0.82 16 8 C -0.08 0.02 2.81 71.24 0.20 0.22 16 9 O -0.57 -0.03 12.74 -148.98 -1.90 -1.93 16 10 Si 0.77 -2.07 29.78 68.60 2.04 -0.03 16 11 C -0.05 -0.34 9.60 22.26 0.21 -0.13 16 12 C -0.16 -1.34 9.99 22.37 0.22 -1.11 16 13 C 0.52 2.98 7.14 87.66 0.63 3.61 16 14 O -0.57 -9.58 16.17 15.94 0.26 -9.33 16 15 N -0.70 1.37 4.19 -442.53 -1.86 -0.48 16 16 C 0.15 -0.04 2.78 44.99 0.13 0.09 16 17 H 0.07 0.33 7.58 -2.38 -0.02 0.31 16 18 C -0.12 0.74 5.61 30.60 0.17 0.91 16 19 C -0.11 0.91 5.03 30.60 0.15 1.06 16 20 C -0.09 0.30 2.43 -10.79 -0.03 0.27 16 21 H 0.07 -0.04 8.14 -2.39 -0.02 -0.06 16 22 C 0.08 -0.32 6.43 71.98 0.46 0.15 16 23 O -0.60 -0.08 13.20 -148.98 -1.97 -2.04 16 24 C -0.10 -0.02 4.94 30.59 0.15 0.13 16 25 C -0.13 -0.30 5.60 30.59 0.17 -0.13 16 26 H 0.08 -0.31 6.91 -2.39 -0.02 -0.32 16 27 H 0.11 -1.18 7.92 -2.39 -0.02 -1.20 16 28 H 0.06 0.02 8.14 -2.39 -0.02 0.00 16 29 H 0.12 -0.45 6.31 -2.39 -0.02 -0.46 16 30 H 0.16 -0.38 5.43 -2.91 -0.02 -0.40 16 31 H 0.13 0.37 4.87 -2.91 -0.01 0.36 16 32 H 0.09 -0.37 7.96 -2.39 -0.02 -0.38 16 33 H 0.40 -4.27 8.74 -74.06 -0.65 -4.92 16 34 H -0.29 -0.60 7.11 99.48 0.71 0.11 16 35 H -0.29 -1.29 7.11 99.48 0.71 -0.58 16 36 H 0.15 0.46 8.06 -2.91 -0.02 0.44 16 37 H 0.14 1.01 8.06 -2.91 -0.02 0.98 16 38 H 0.42 -3.71 6.65 -92.70 -0.62 -4.32 16 39 H 0.09 -0.68 8.14 -2.39 -0.02 -0.70 16 40 H 0.09 -0.51 8.14 -2.39 -0.02 -0.53 16 41 H 0.08 -0.88 6.51 -2.39 -0.02 -0.89 16 42 H 0.09 -0.84 8.14 -2.39 -0.02 -0.86 16 43 H 0.05 -0.36 8.14 -2.39 -0.02 -0.38 16 44 H 0.06 -0.38 8.14 -2.39 -0.02 -0.40 16 45 H 0.39 -3.13 9.12 -74.06 -0.68 -3.81 16 46 H 0.05 0.23 7.82 -2.38 -0.02 0.22 16 47 H 0.06 -0.07 7.60 -2.39 -0.02 -0.09 16 48 H 0.04 0.34 8.14 -2.39 -0.02 0.32 16 49 H 0.08 0.14 8.14 -2.39 -0.02 0.12 16 Total: 0.00 -27.75 385.50 -1.40 -29.14 By element: Atomic # 1 Polarization: -16.55 SS G_CDS: -0.92 Total: -17.47 kcal Atomic # 6 Polarization: 2.26 SS G_CDS: 3.63 Total: 5.88 kcal Atomic # 7 Polarization: 1.37 SS G_CDS: -1.86 Total: -0.48 kcal Atomic # 8 Polarization: -12.75 SS G_CDS: -4.29 Total: -17.05 kcal Atomic # 14 Polarization: -2.07 SS G_CDS: 2.04 Total: -0.03 kcal Total: -27.75 -1.40 -29.14 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_7207534_10157680.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -105.397 kcal (2) G-P(sol) polarization free energy of solvation -27.746 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -133.143 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.396 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -29.143 kcal (6) G-S(sol) free energy of system = (1) + (5) -134.539 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.15 seconds