Wall clock time and date at job start Mon Mar 8 2021 02:31:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42896 * 1 3 3 Si 1.86301 * 109.46974 * 2 1 4 4 C 1.50701 * 109.47417 * 120.00123 * 2 1 3 5 5 C 1.38230 * 119.99832 * 244.72919 * 4 2 1 6 6 C 1.38237 * 120.00024 * 179.78833 * 5 4 2 7 7 C 1.38240 * 119.99909 * 0.43694 * 6 5 4 8 8 C 1.50694 * 120.00238 * 179.83490 * 7 6 5 9 9 C 1.50696 * 109.47560 * 269.97918 * 8 7 6 10 10 O 1.21280 * 119.99523 * 0.02562 * 9 8 7 11 11 N 1.34769 * 120.00614 * 179.97438 * 9 8 7 12 12 C 1.46494 * 120.00399 * 180.02562 * 11 9 8 13 13 H 1.09003 * 109.47272 * 324.99934 * 12 11 9 14 14 C 1.52998 * 109.47275 * 84.99978 * 12 11 9 15 15 C 1.52997 * 109.47321 * 60.00427 * 14 12 11 16 16 C 1.52996 * 109.47328 * 59.99765 * 15 14 12 17 17 H 1.09000 * 109.47134 * 60.00556 * 16 15 14 18 18 C 1.53004 * 109.47182 * 180.02562 * 16 15 14 19 19 O 1.42902 * 109.46893 * 294.99785 * 18 16 15 20 20 C 1.52998 * 109.47111 * 300.00363 * 16 15 14 21 21 C 1.53001 * 109.47250 * 60.00293 * 20 16 15 22 22 C 1.38240 * 119.99783 * 359.81613 * 7 6 5 23 23 C 1.38234 * 119.99999 * 359.97213 * 22 7 6 24 24 H 0.96708 * 114.00101 * 299.99304 * 1 2 3 25 25 H 1.09002 * 109.46984 * 240.00143 * 2 1 3 26 26 H 1.48494 * 109.99914 * 178.67998 * 3 2 1 27 27 H 1.48493 * 110.00101 * 300.00094 * 3 2 1 28 28 H 1.07999 * 120.00632 * 359.97438 * 5 4 2 29 29 H 1.08003 * 120.00584 * 180.27696 * 6 5 4 30 30 H 1.09008 * 109.47105 * 29.98074 * 8 7 6 31 31 H 1.09003 * 109.46854 * 149.97764 * 8 7 6 32 32 H 0.97007 * 119.99737 * 0.02562 * 11 9 8 33 33 H 1.09007 * 109.47029 * 180.02562 * 14 12 11 34 34 H 1.08996 * 109.47262 * 299.99834 * 14 12 11 35 35 H 1.09000 * 109.46559 * 299.99970 * 15 14 12 36 36 H 1.09000 * 109.47324 * 180.02562 * 15 14 12 37 37 H 1.08992 * 109.47136 * 55.00077 * 18 16 15 38 38 H 1.08995 * 109.47286 * 175.00334 * 18 16 15 39 39 H 0.96699 * 113.99669 * 179.97438 * 19 18 16 40 40 H 1.08998 * 109.47621 * 299.99699 * 20 16 15 41 41 H 1.09006 * 109.47381 * 180.02562 * 20 16 15 42 42 H 1.09001 * 109.46999 * 180.02562 * 21 20 16 43 43 H 1.08993 * 109.47426 * 59.99924 * 21 20 16 44 44 H 1.07995 * 120.00095 * 179.97438 * 22 7 6 45 45 H 1.08000 * 120.00376 * 179.97438 * 23 22 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4290 0.0000 0.0000 3 14 2.0499 1.7565 0.0000 4 6 1.9314 -0.7104 1.2304 5 6 2.6436 -0.0135 2.1885 6 6 3.1007 -0.6642 3.3192 7 6 2.8533 -2.0138 3.4876 8 6 3.3548 -2.7240 4.7185 9 6 4.7359 -3.2675 4.4574 10 8 5.2614 -3.0947 3.3781 11 7 5.3875 -3.9446 5.4234 12 6 6.7302 -4.4725 5.1697 13 1 6.8039 -4.7943 4.1308 14 6 7.7670 -3.3803 5.4398 15 6 7.6639 -2.9286 6.8980 16 6 7.9262 -4.1203 7.8209 17 1 8.9253 -4.5130 7.6321 18 6 7.8224 -3.6687 9.2790 19 8 8.8649 -2.7336 9.5634 20 6 6.8894 -5.2125 7.5507 21 6 6.9927 -5.6643 6.0926 22 6 2.1456 -2.7119 2.5270 23 6 1.6847 -2.0602 1.3983 24 1 -0.3934 0.4416 0.7652 25 1 1.7923 -0.5138 -0.8900 26 1 3.5345 1.7703 0.0321 27 1 1.5614 2.4679 -1.2084 28 1 2.8404 1.0400 2.0551 29 1 3.6533 -0.1188 4.0700 30 1 3.3919 -2.0231 5.5526 31 1 2.6815 -3.5453 4.9637 32 1 4.9672 -4.0825 6.2868 33 1 8.7662 -3.7730 5.2506 34 1 7.5802 -2.5313 4.7823 35 1 6.6648 -2.5358 7.0867 36 1 8.4022 -2.1501 7.0903 37 1 6.8547 -3.1954 9.4448 38 1 7.9210 -4.5334 9.9352 39 1 8.8602 -2.4038 10.4724 40 1 5.8902 -4.8198 7.7395 41 1 7.0759 -6.0614 8.2085 42 1 6.2537 -6.4421 5.9000 43 1 7.9917 -6.0571 5.9038 44 1 1.9527 -3.7663 2.6583 45 1 1.1321 -2.6056 0.6476 There are 57 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 57 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_22_7207534_12335836.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 02:31:48 Heat of formation + Delta-G solvation = -107.528413 kcal Electronic energy + Delta-G solvation = -25203.896924 eV Core-core repulsion = 21572.821901 eV Total energy + Delta-G solvation = -3631.075024 eV No. of doubly occupied orbitals = 57 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 306.166 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -41.44686 -40.51908 -39.36464 -37.68571 -37.39026 -34.73840 -34.01927 -31.91186 -31.89050 -31.68434 -29.51929 -26.56147 -25.58347 -23.77834 -23.74762 -22.69089 -22.08853 -21.43385 -20.19144 -18.47467 -18.31390 -18.18494 -17.24076 -16.91940 -16.62431 -16.32943 -16.24183 -15.94649 -15.76157 -15.58138 -15.04004 -14.97295 -14.74894 -14.56892 -14.42253 -13.98603 -13.96074 -13.60411 -13.30298 -13.22829 -13.12095 -13.00903 -12.77771 -12.52820 -12.24291 -12.15916 -11.91304 -11.65036 -11.63783 -11.38329 -11.18465 -10.91787 -10.82052 -10.37155 -10.00483 -9.81141 -9.56603 -4.99136 0.29495 0.51778 1.35264 1.70142 1.71045 2.03231 2.17484 2.83405 3.11326 3.50630 3.56931 3.61768 3.64375 3.78082 3.82344 3.87737 3.94424 4.01165 4.06564 4.17048 4.25479 4.28595 4.36349 4.38002 4.39723 4.44432 4.50815 4.53451 4.57325 4.59905 4.67405 4.73273 4.89518 4.96764 5.01749 5.04048 5.06894 5.12016 5.23130 5.35237 5.36802 5.42745 5.55691 5.59849 5.63290 6.05057 6.50992 6.61605 6.61869 7.28904 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.540 6.540 2 C -0.068 4.068 3 Si 0.686 3.314 4 C -0.119 4.119 5 C -0.114 4.114 6 C -0.100 4.100 7 C -0.062 4.062 8 C -0.104 4.104 9 C 0.514 3.486 10 O -0.528 6.528 11 N -0.726 5.726 12 C 0.145 3.855 13 H 0.088 0.912 14 C -0.132 4.132 15 C -0.107 4.107 16 C -0.089 4.089 17 H 0.080 0.920 18 C 0.079 3.921 19 O -0.573 6.573 20 C -0.114 4.114 21 C -0.126 4.126 22 C -0.104 4.104 23 C -0.091 4.091 24 H 0.378 0.622 25 H 0.113 0.887 26 H -0.258 1.258 27 H -0.255 1.255 28 H 0.126 0.874 29 H 0.124 0.876 30 H 0.104 0.896 31 H 0.104 0.896 32 H 0.398 0.602 33 H 0.072 0.928 34 H 0.068 0.932 35 H 0.059 0.941 36 H 0.070 0.930 37 H 0.044 0.956 38 H 0.045 0.955 39 H 0.380 0.620 40 H 0.062 0.938 41 H 0.070 0.930 42 H 0.072 0.928 43 H 0.081 0.919 44 H 0.122 0.878 45 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.003 -0.958 7.775 8.086 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.346 6.346 2 C -0.179 4.179 3 Si 0.588 3.412 4 C -0.120 4.120 5 C -0.131 4.131 6 C -0.118 4.118 7 C -0.062 4.062 8 C -0.144 4.144 9 C 0.300 3.700 10 O -0.403 6.403 11 N -0.379 5.379 12 C 0.041 3.959 13 H 0.106 0.894 14 C -0.170 4.170 15 C -0.145 4.145 16 C -0.108 4.108 17 H 0.098 0.902 18 C 0.001 3.999 19 O -0.378 6.378 20 C -0.152 4.152 21 C -0.164 4.164 22 C -0.122 4.122 23 C -0.109 4.109 24 H 0.226 0.774 25 H 0.130 0.870 26 H -0.183 1.183 27 H -0.180 1.180 28 H 0.144 0.856 29 H 0.142 0.858 30 H 0.122 0.878 31 H 0.122 0.878 32 H 0.233 0.767 33 H 0.091 0.909 34 H 0.087 0.913 35 H 0.077 0.923 36 H 0.089 0.911 37 H 0.062 0.938 38 H 0.063 0.937 39 H 0.227 0.773 40 H 0.080 0.920 41 H 0.088 0.912 42 H 0.091 0.909 43 H 0.100 0.900 44 H 0.140 0.860 45 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges -0.894 -0.668 5.363 5.478 hybrid contribution -0.176 -0.694 0.956 1.195 sum -1.070 -1.363 6.320 6.553 Atomic orbital electron populations 1.86505 1.17140 1.81722 1.49186 1.25051 0.85162 1.10097 0.97588 0.94831 0.81222 0.78095 0.87049 1.20306 0.99831 0.95097 0.96723 1.20915 0.98779 0.99133 0.94279 1.20907 0.99161 0.93992 0.97742 1.19261 0.97875 0.93731 0.95349 1.20701 0.94338 1.01580 0.97802 1.20554 0.87271 0.77994 0.84214 1.90757 1.68459 1.56803 1.24273 1.46140 1.17874 1.57342 1.16558 1.20947 0.81484 0.93250 1.00209 0.89362 1.21933 0.98969 0.99148 0.96974 1.21466 1.01912 0.97405 0.93667 1.21187 1.00298 0.95920 0.93364 0.90206 1.22229 0.89913 0.91600 0.96139 1.86483 1.53421 1.62984 1.34942 1.21517 0.98731 0.98264 0.96667 1.21812 1.03311 0.96995 0.94278 1.21010 0.97841 0.99577 0.93765 1.20957 0.98744 0.93739 0.97435 0.77446 0.87004 1.18264 1.18033 0.85648 0.85812 0.87775 0.87804 0.76650 0.90942 0.91286 0.92258 0.91134 0.93752 0.93665 0.77274 0.91962 0.91151 0.90913 0.90041 0.86036 0.85705 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.54 -0.62 12.83 -35.23 -0.45 -1.08 16 2 C -0.07 -0.07 2.80 36.01 0.10 0.03 16 3 Si 0.69 0.09 29.80 -169.99 -5.07 -4.98 16 4 C -0.12 -0.20 5.35 -104.62 -0.56 -0.76 16 5 C -0.11 -0.12 8.67 -39.58 -0.34 -0.46 16 6 C -0.10 -0.10 9.70 -39.58 -0.38 -0.49 16 7 C -0.06 -0.06 4.37 -104.62 -0.46 -0.52 16 8 C -0.10 0.16 5.83 -29.04 -0.17 -0.01 16 9 C 0.51 0.54 7.79 -10.99 -0.09 0.45 16 10 O -0.53 -3.02 15.70 5.56 0.09 -2.94 16 11 N -0.73 1.00 4.23 -53.81 -0.23 0.77 16 12 C 0.15 -0.08 2.78 -67.93 -0.19 -0.26 16 13 H 0.09 0.14 7.58 -51.93 -0.39 -0.26 16 14 C -0.13 -0.03 5.60 -26.73 -0.15 -0.18 16 15 C -0.11 0.04 4.94 -26.73 -0.13 -0.09 16 16 C -0.09 0.12 2.43 -90.62 -0.22 -0.10 16 17 H 0.08 -0.01 8.14 -51.93 -0.42 -0.44 16 18 C 0.08 -0.13 6.43 37.16 0.24 0.11 16 19 O -0.57 -0.02 13.20 -35.23 -0.46 -0.49 16 20 C -0.11 0.35 5.03 -26.73 -0.13 0.21 16 21 C -0.13 0.30 5.61 -26.73 -0.15 0.15 16 22 C -0.10 -0.16 9.70 -39.58 -0.38 -0.55 16 23 C -0.09 -0.19 9.69 -39.58 -0.38 -0.57 16 24 H 0.38 -1.08 8.70 45.56 0.40 -0.68 16 25 H 0.11 0.20 7.96 -51.93 -0.41 -0.22 16 26 H -0.26 -0.74 7.11 56.52 0.40 -0.34 16 27 H -0.26 -0.82 7.11 56.52 0.40 -0.42 16 28 H 0.13 -0.12 4.91 -52.49 -0.26 -0.38 16 29 H 0.12 -0.09 8.06 -52.48 -0.42 -0.51 16 30 H 0.10 -0.39 8.09 -51.92 -0.42 -0.81 16 31 H 0.10 -0.37 8.09 -51.93 -0.42 -0.79 16 32 H 0.40 -1.54 6.87 -40.82 -0.28 -1.82 16 33 H 0.07 0.01 8.14 -51.93 -0.42 -0.41 16 34 H 0.07 0.16 8.14 -51.93 -0.42 -0.26 16 35 H 0.06 -0.05 7.60 -51.93 -0.39 -0.44 16 36 H 0.07 0.09 7.82 -51.93 -0.41 -0.31 16 37 H 0.04 -0.11 8.14 -51.93 -0.42 -0.53 16 38 H 0.05 -0.11 8.14 -51.93 -0.42 -0.53 16 39 H 0.38 -1.51 9.12 45.56 0.42 -1.09 16 40 H 0.06 -0.25 6.51 -51.93 -0.34 -0.59 16 41 H 0.07 -0.23 8.14 -51.93 -0.42 -0.66 16 42 H 0.07 -0.20 8.14 -51.93 -0.42 -0.62 16 43 H 0.08 -0.19 8.14 -51.93 -0.42 -0.61 16 44 H 0.12 0.01 8.06 -52.49 -0.42 -0.41 16 45 H 0.12 0.19 8.06 -52.49 -0.42 -0.24 16 LS Contribution 359.24 15.07 5.41 5.41 Total: 0.00 -9.20 359.24 -10.47 -19.67 By element: Atomic # 1 Polarization: -7.00 SS G_CDS: -6.36 Total: -13.36 kcal Atomic # 6 Polarization: 0.38 SS G_CDS: -3.40 Total: -3.02 kcal Atomic # 7 Polarization: 1.00 SS G_CDS: -0.23 Total: 0.77 kcal Atomic # 8 Polarization: -3.67 SS G_CDS: -0.83 Total: -4.50 kcal Atomic # 14 Polarization: 0.09 SS G_CDS: -5.07 Total: -4.98 kcal Total LS contribution 5.41 Total: 5.41 kcal Total: -9.20 -10.47 -19.67 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_7207534_12335836.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -87.855 kcal (2) G-P(sol) polarization free energy of solvation -9.201 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -97.056 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.472 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -19.673 kcal (6) G-S(sol) free energy of system = (1) + (5) -107.528 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds