Wall clock time and date at job start Mon Mar 8 2021 02:32:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42909 * 1 3 3 Si 1.86298 * 109.47272 * 2 1 4 4 C 1.50695 * 109.46769 * 239.99840 * 2 1 3 5 5 C 1.38395 * 119.82960 * 299.99780 * 4 2 1 6 6 C 1.37898 * 120.17467 * 180.02562 * 5 4 2 7 7 C 1.39836 * 119.82058 * 0.02562 * 6 5 4 8 8 C 1.47207 * 120.16516 * 179.97438 * 7 6 5 9 9 C 1.34814 * 119.99849 * 180.02562 * 8 7 6 10 10 C 1.46430 * 120.00182 * 180.02562 * 9 8 7 11 11 O 1.21695 * 119.99303 * 359.97438 * 10 9 8 12 12 N 1.34768 * 120.00094 * 179.97438 * 10 9 8 13 13 C 1.46500 * 120.00056 * 179.97438 * 12 10 9 14 14 H 1.09001 * 109.46596 * 35.00394 * 13 12 10 15 15 C 1.53006 * 109.47249 * 154.99998 * 13 12 10 16 16 C 1.52999 * 109.46626 * 60.00049 * 15 13 12 17 17 C 1.52997 * 109.46991 * 60.00378 * 16 15 13 18 18 H 1.09000 * 109.47611 * 59.99933 * 17 16 15 19 19 C 1.53002 * 109.47143 * 179.97438 * 17 16 15 20 20 O 1.42903 * 109.47280 * 294.99993 * 19 17 16 21 21 C 1.52996 * 109.47131 * 299.99311 * 17 16 15 22 22 C 1.52997 * 109.47473 * 275.00296 * 13 12 10 23 23 C 1.39832 * 119.66281 * 0.25338 * 7 6 5 24 24 C 1.37896 * 119.82534 * 359.51448 * 23 7 6 25 25 H 0.96701 * 113.99673 * 300.00438 * 1 2 3 26 26 H 1.08997 * 109.46442 * 119.99787 * 2 1 3 27 27 H 1.48491 * 110.00208 * 178.68044 * 3 2 1 28 28 H 1.48507 * 109.99874 * 299.99786 * 3 2 1 29 29 H 1.08004 * 119.91722 * 359.97438 * 5 4 2 30 30 H 1.07995 * 120.08798 * 179.97438 * 6 5 4 31 31 H 1.07997 * 120.00571 * 359.97438 * 8 7 6 32 32 H 1.08003 * 119.99960 * 359.97438 * 9 8 7 33 33 H 0.97007 * 120.00298 * 0.02562 * 12 10 9 34 34 H 1.08993 * 109.46955 * 180.02562 * 15 13 12 35 35 H 1.09000 * 109.47050 * 300.00351 * 15 13 12 36 36 H 1.09002 * 109.46719 * 180.02562 * 16 15 13 37 37 H 1.08993 * 109.47839 * 299.99931 * 16 15 13 38 38 H 1.09000 * 109.47173 * 55.00063 * 19 17 16 39 39 H 1.09002 * 109.47125 * 175.00124 * 19 17 16 40 40 H 0.96699 * 113.99746 * 180.02562 * 20 19 17 41 41 H 1.08996 * 109.47452 * 300.00000 * 21 17 16 42 42 H 1.09000 * 109.47054 * 180.02562 * 21 17 16 43 43 H 1.09002 * 109.47153 * 59.99757 * 22 13 12 44 44 H 1.08996 * 109.46952 * 179.97438 * 22 13 12 45 45 H 1.08000 * 120.08839 * 179.74639 * 23 7 6 46 46 H 1.07998 * 119.91311 * 180.23236 * 24 23 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4291 0.0000 0.0000 3 14 2.0501 1.7564 0.0000 4 6 1.9313 -0.7104 -1.2304 5 6 1.5948 -2.0354 -1.4459 6 6 2.0509 -2.6926 -2.5691 7 6 2.8559 -2.0167 -3.4914 8 6 3.3474 -2.7110 -4.6928 9 6 4.1237 -2.0563 -5.5795 10 6 4.6122 -2.7468 -6.7748 11 8 4.3178 -3.9117 -6.9675 12 7 5.3878 -2.0921 -7.6614 13 6 5.8770 -2.7831 -8.8571 14 1 5.1201 -3.4856 -9.2058 15 6 6.1665 -1.7583 -9.9557 16 6 7.2289 -0.7721 -9.4660 17 6 8.5125 -1.5323 -9.1265 18 1 8.8765 -2.0463 -10.0161 19 6 9.5751 -0.5461 -8.6374 20 8 9.9300 0.3386 -9.7021 21 6 8.2230 -2.5570 -8.0279 22 6 7.1606 -3.5432 -8.5176 23 6 3.1963 -0.6797 -3.2637 24 6 2.7284 -0.0350 -2.1381 25 1 -0.3933 0.4418 0.7650 26 1 1.7923 -0.5138 0.8900 27 1 3.5346 1.7703 0.0321 28 1 1.5616 2.4678 -1.2086 29 1 0.9740 -2.5565 -0.7320 30 1 1.7878 -3.7267 -2.7356 31 1 3.0869 -3.7451 -4.8635 32 1 4.3846 -1.0223 -5.4086 33 1 5.6228 -1.1636 -7.5076 34 1 6.5301 -2.2724 -10.8454 35 1 5.2520 -1.2168 -10.1976 36 1 7.4348 -0.0418 -10.2486 37 1 6.8650 -0.2580 -8.5765 38 1 9.1781 0.0312 -7.8024 39 1 10.4584 -1.0955 -8.3119 40 1 10.6011 0.9925 -9.4629 41 1 7.8591 -2.0430 -7.1383 42 1 9.1376 -3.0982 -7.7857 43 1 6.9543 -4.2733 -7.7349 44 1 7.5243 -4.0576 -9.4070 45 1 3.8210 -0.1523 -3.9694 46 1 2.9874 0.9987 -1.9627 There are 59 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 59 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_22_7207534_12360594.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 02:32:19 Heat of formation + Delta-G solvation = -85.653256 kcal Electronic energy + Delta-G solvation = -25898.187158 eV Core-core repulsion = 22139.834572 eV Total energy + Delta-G solvation = -3758.352586 eV No. of doubly occupied orbitals = 59 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 318.166 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -41.30168 -40.63860 -39.45966 -37.81285 -37.48710 -35.16331 -34.71724 -32.38407 -31.93613 -31.80695 -30.96900 -27.33984 -26.34386 -24.26859 -23.96273 -23.72000 -22.30966 -21.99926 -20.52296 -20.20115 -18.72513 -18.44987 -18.30247 -17.53602 -16.96311 -16.71203 -16.49969 -16.23023 -15.89794 -15.75390 -15.39949 -15.28581 -14.96397 -14.81403 -14.71635 -14.38772 -14.04733 -13.98037 -13.82400 -13.61263 -13.34609 -13.19550 -13.10544 -12.96865 -12.58958 -12.34643 -12.21241 -12.04378 -11.94910 -11.58705 -11.38412 -11.33424 -11.14709 -10.93923 -10.85216 -10.40000 -10.07334 -10.00236 -9.27721 -5.04363 -0.57697 0.29371 0.88988 1.20348 1.56516 1.89237 2.23692 2.31660 2.73728 3.14605 3.27654 3.52464 3.60214 3.63935 3.68022 3.74140 3.82366 3.84025 4.06574 4.10129 4.12182 4.19897 4.21537 4.27526 4.32020 4.32880 4.41811 4.44056 4.46324 4.60457 4.64528 4.70220 4.73772 4.87954 4.91858 5.00006 5.03258 5.05890 5.08610 5.11992 5.17286 5.31988 5.35112 5.37138 5.39970 5.54258 5.58662 5.79772 6.53609 6.55900 6.61791 7.30232 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.545 6.545 2 C -0.075 4.075 3 Si 0.684 3.316 4 C -0.063 4.063 5 C -0.091 4.091 6 C -0.091 4.091 7 C -0.073 4.073 8 C -0.015 4.015 9 C -0.215 4.215 10 C 0.548 3.452 11 O -0.543 6.543 12 N -0.719 5.719 13 C 0.145 3.855 14 H 0.090 0.910 15 C -0.129 4.129 16 C -0.111 4.111 17 C -0.088 4.088 18 H 0.080 0.920 19 C 0.079 3.921 20 O -0.573 6.573 21 C -0.112 4.112 22 C -0.129 4.129 23 C -0.094 4.094 24 C -0.126 4.126 25 H 0.384 0.616 26 H 0.077 0.923 27 H -0.255 1.255 28 H -0.250 1.250 29 H 0.133 0.867 30 H 0.134 0.866 31 H 0.139 0.861 32 H 0.128 0.872 33 H 0.399 0.601 34 H 0.081 0.919 35 H 0.071 0.929 36 H 0.075 0.925 37 H 0.057 0.943 38 H 0.044 0.956 39 H 0.045 0.955 40 H 0.380 0.620 41 H 0.063 0.937 42 H 0.065 0.935 43 H 0.071 0.929 44 H 0.074 0.926 45 H 0.131 0.869 46 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.497 4.247 4.426 6.314 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.351 6.351 2 C -0.185 4.185 3 Si 0.585 3.415 4 C -0.063 4.063 5 C -0.109 4.109 6 C -0.109 4.109 7 C -0.073 4.073 8 C -0.035 4.035 9 C -0.236 4.236 10 C 0.337 3.663 11 O -0.422 6.422 12 N -0.371 5.371 13 C 0.040 3.960 14 H 0.108 0.892 15 C -0.167 4.167 16 C -0.148 4.148 17 C -0.107 4.107 18 H 0.098 0.902 19 C 0.001 3.999 20 O -0.379 6.379 21 C -0.149 4.149 22 C -0.168 4.168 23 C -0.112 4.112 24 C -0.144 4.144 25 H 0.231 0.769 26 H 0.095 0.905 27 H -0.180 1.180 28 H -0.175 1.175 29 H 0.151 0.849 30 H 0.152 0.848 31 H 0.157 0.843 32 H 0.146 0.854 33 H 0.235 0.765 34 H 0.099 0.901 35 H 0.089 0.911 36 H 0.094 0.906 37 H 0.075 0.925 38 H 0.062 0.938 39 H 0.064 0.936 40 H 0.227 0.773 41 H 0.082 0.918 42 H 0.084 0.916 43 H 0.090 0.910 44 H 0.093 0.907 45 H 0.149 0.851 46 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges 1.430 3.339 2.956 4.683 hybrid contribution 0.684 0.323 0.295 0.812 sum 2.113 3.662 3.251 5.334 Atomic orbital electron populations 1.86493 1.17026 1.81844 1.49768 1.24726 0.85888 1.10472 0.97454 0.95257 0.80620 0.78044 0.87570 1.19532 0.97249 0.94492 0.95047 1.20980 0.98613 0.93711 0.97592 1.21481 0.95907 1.00160 0.93307 1.19054 0.99269 0.93807 0.95168 1.22396 0.91249 0.99642 0.90201 1.22918 1.03515 1.01014 0.96118 1.18307 0.78139 0.86498 0.83351 1.90828 1.58190 1.16601 1.76597 1.46016 1.51919 1.15641 1.23520 1.20972 0.96006 0.94407 0.84568 0.89188 1.21857 0.99558 0.97299 0.97951 1.21520 0.94072 0.97834 1.01421 1.21185 0.94667 0.95375 0.99463 0.90156 1.22236 0.97077 0.91487 0.89117 1.86472 1.63165 1.49079 1.39166 1.21480 0.99032 0.96661 0.97766 1.21895 0.94625 0.97954 1.02286 1.21293 0.99076 0.93920 0.96916 1.20804 0.99594 0.99041 0.94944 0.76871 0.90525 1.17970 1.17469 0.84934 0.84794 0.84320 0.85444 0.76523 0.90065 0.91051 0.90606 0.92475 0.93774 0.93626 0.77282 0.91817 0.91622 0.91044 0.90711 0.85128 0.86179 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.54 0.08 12.74 -35.23 -0.45 -0.37 16 2 C -0.07 0.03 2.81 36.00 0.10 0.13 16 3 Si 0.68 -0.99 29.77 -169.99 -5.06 -6.05 16 4 C -0.06 -0.12 5.43 -104.51 -0.57 -0.69 16 5 C -0.09 -0.14 9.59 -39.65 -0.38 -0.52 16 6 C -0.09 -0.11 9.80 -39.11 -0.38 -0.49 16 7 C -0.07 -0.11 5.87 -105.06 -0.62 -0.72 16 8 C -0.02 -0.02 9.46 -37.15 -0.35 -0.37 16 9 C -0.21 -0.16 9.41 -37.50 -0.35 -0.51 16 10 C 0.55 1.44 7.71 -12.97 -0.10 1.34 16 11 O -0.54 -3.50 15.89 5.19 0.08 -3.42 16 12 N -0.72 -0.08 4.23 -55.20 -0.23 -0.31 16 13 C 0.14 0.05 2.78 -67.93 -0.19 -0.14 16 14 H 0.09 0.19 7.58 -51.93 -0.39 -0.20 16 15 C -0.13 0.13 5.61 -26.73 -0.15 -0.02 16 16 C -0.11 0.11 4.93 -26.73 -0.13 -0.02 16 17 C -0.09 0.06 2.43 -90.62 -0.22 -0.16 16 18 H 0.08 0.03 8.14 -51.93 -0.42 -0.40 16 19 C 0.08 -0.07 6.43 37.16 0.24 0.17 16 20 O -0.57 -0.14 13.20 -35.23 -0.46 -0.61 16 21 C -0.11 0.09 5.05 -26.73 -0.13 -0.05 16 22 C -0.13 -0.03 5.60 -26.73 -0.15 -0.18 16 23 C -0.09 -0.11 9.41 -39.11 -0.37 -0.48 16 24 C -0.13 -0.24 8.65 -39.65 -0.34 -0.58 16 25 H 0.38 -1.99 8.74 45.56 0.40 -1.59 16 26 H 0.08 -0.16 7.96 -51.93 -0.41 -0.57 16 27 H -0.25 -0.21 7.11 56.52 0.40 0.19 16 28 H -0.25 -0.45 7.11 56.52 0.40 -0.05 16 29 H 0.13 0.04 8.06 -52.48 -0.42 -0.38 16 30 H 0.13 -0.09 8.06 -52.49 -0.42 -0.51 16 31 H 0.14 0.25 7.52 -52.49 -0.39 -0.15 16 32 H 0.13 -0.22 6.07 -52.48 -0.32 -0.54 16 33 H 0.40 -0.80 6.85 -40.82 -0.28 -1.08 16 34 H 0.08 -0.09 8.14 -51.93 -0.42 -0.51 16 35 H 0.07 -0.07 8.14 -51.93 -0.42 -0.50 16 36 H 0.08 0.02 7.82 -51.93 -0.41 -0.39 16 37 H 0.06 -0.10 6.50 -51.93 -0.34 -0.44 16 38 H 0.04 -0.08 8.14 -51.93 -0.42 -0.50 16 39 H 0.05 -0.06 8.14 -51.93 -0.42 -0.48 16 40 H 0.38 -1.40 9.12 45.56 0.42 -0.99 16 41 H 0.06 -0.05 7.60 -51.93 -0.39 -0.44 16 42 H 0.07 -0.05 8.14 -51.93 -0.42 -0.48 16 43 H 0.07 0.15 8.14 -51.93 -0.42 -0.27 16 44 H 0.07 -0.02 8.14 -51.93 -0.42 -0.44 16 45 H 0.13 -0.14 6.17 -52.49 -0.32 -0.47 16 46 H 0.12 0.14 4.85 -52.49 -0.25 -0.12 16 LS Contribution 369.04 15.07 5.56 5.56 Total: 0.00 -9.02 369.04 -10.79 -19.81 By element: Atomic # 1 Polarization: -5.19 SS G_CDS: -6.13 Total: -11.32 kcal Atomic # 6 Polarization: 0.80 SS G_CDS: -4.10 Total: -3.30 kcal Atomic # 7 Polarization: -0.08 SS G_CDS: -0.23 Total: -0.31 kcal Atomic # 8 Polarization: -3.57 SS G_CDS: -0.83 Total: -4.40 kcal Atomic # 14 Polarization: -0.99 SS G_CDS: -5.06 Total: -6.05 kcal Total LS contribution 5.56 Total: 5.56 kcal Total: -9.02 -10.79 -19.81 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_7207534_12360594.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -65.841 kcal (2) G-P(sol) polarization free energy of solvation -9.021 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -74.863 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.791 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -19.812 kcal (6) G-S(sol) free energy of system = (1) + (5) -85.653 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds