Wall clock time and date at job start Mon Mar 8 2021 02:32:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42909 * 1 3 3 Si 1.86298 * 109.47272 * 2 1 4 4 C 1.50695 * 109.46769 * 239.99840 * 2 1 3 5 5 C 1.38395 * 119.82960 * 299.99780 * 4 2 1 6 6 C 1.37898 * 120.17467 * 180.02562 * 5 4 2 7 7 C 1.39836 * 119.82058 * 0.02562 * 6 5 4 8 8 C 1.47207 * 120.16516 * 179.97438 * 7 6 5 9 9 C 1.34814 * 119.99849 * 180.02562 * 8 7 6 10 10 C 1.46430 * 120.00182 * 180.02562 * 9 8 7 11 11 O 1.21695 * 119.99303 * 359.97438 * 10 9 8 12 12 N 1.34768 * 120.00094 * 179.97438 * 10 9 8 13 13 C 1.46500 * 120.00056 * 179.97438 * 12 10 9 14 14 H 1.09001 * 109.46596 * 35.00394 * 13 12 10 15 15 C 1.53006 * 109.47249 * 154.99998 * 13 12 10 16 16 C 1.52999 * 109.46626 * 60.00049 * 15 13 12 17 17 C 1.52997 * 109.46991 * 60.00378 * 16 15 13 18 18 H 1.09000 * 109.47611 * 59.99933 * 17 16 15 19 19 C 1.53002 * 109.47143 * 179.97438 * 17 16 15 20 20 O 1.42903 * 109.47280 * 294.99993 * 19 17 16 21 21 C 1.52996 * 109.47131 * 299.99311 * 17 16 15 22 22 C 1.52997 * 109.47473 * 275.00296 * 13 12 10 23 23 C 1.39832 * 119.66281 * 0.25338 * 7 6 5 24 24 C 1.37896 * 119.82534 * 359.51448 * 23 7 6 25 25 H 0.96701 * 113.99673 * 300.00438 * 1 2 3 26 26 H 1.08997 * 109.46442 * 119.99787 * 2 1 3 27 27 H 1.48491 * 110.00208 * 178.68044 * 3 2 1 28 28 H 1.48507 * 109.99874 * 299.99786 * 3 2 1 29 29 H 1.08004 * 119.91722 * 359.97438 * 5 4 2 30 30 H 1.07995 * 120.08798 * 179.97438 * 6 5 4 31 31 H 1.07997 * 120.00571 * 359.97438 * 8 7 6 32 32 H 1.08003 * 119.99960 * 359.97438 * 9 8 7 33 33 H 0.97007 * 120.00298 * 0.02562 * 12 10 9 34 34 H 1.08993 * 109.46955 * 180.02562 * 15 13 12 35 35 H 1.09000 * 109.47050 * 300.00351 * 15 13 12 36 36 H 1.09002 * 109.46719 * 180.02562 * 16 15 13 37 37 H 1.08993 * 109.47839 * 299.99931 * 16 15 13 38 38 H 1.09000 * 109.47173 * 55.00063 * 19 17 16 39 39 H 1.09002 * 109.47125 * 175.00124 * 19 17 16 40 40 H 0.96699 * 113.99746 * 180.02562 * 20 19 17 41 41 H 1.08996 * 109.47452 * 300.00000 * 21 17 16 42 42 H 1.09000 * 109.47054 * 180.02562 * 21 17 16 43 43 H 1.09002 * 109.47153 * 59.99757 * 22 13 12 44 44 H 1.08996 * 109.46952 * 179.97438 * 22 13 12 45 45 H 1.08000 * 120.08839 * 179.74639 * 23 7 6 46 46 H 1.07998 * 119.91311 * 180.23236 * 24 23 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4291 0.0000 0.0000 3 14 2.0501 1.7564 0.0000 4 6 1.9313 -0.7104 -1.2304 5 6 1.5948 -2.0354 -1.4459 6 6 2.0509 -2.6926 -2.5691 7 6 2.8559 -2.0167 -3.4914 8 6 3.3474 -2.7110 -4.6928 9 6 4.1237 -2.0563 -5.5795 10 6 4.6122 -2.7468 -6.7748 11 8 4.3178 -3.9117 -6.9675 12 7 5.3878 -2.0921 -7.6614 13 6 5.8770 -2.7831 -8.8571 14 1 5.1201 -3.4856 -9.2058 15 6 6.1665 -1.7583 -9.9557 16 6 7.2289 -0.7721 -9.4660 17 6 8.5125 -1.5323 -9.1265 18 1 8.8765 -2.0463 -10.0161 19 6 9.5751 -0.5461 -8.6374 20 8 9.9300 0.3386 -9.7021 21 6 8.2230 -2.5570 -8.0279 22 6 7.1606 -3.5432 -8.5176 23 6 3.1963 -0.6797 -3.2637 24 6 2.7284 -0.0350 -2.1381 25 1 -0.3933 0.4418 0.7650 26 1 1.7923 -0.5138 0.8900 27 1 3.5346 1.7703 0.0321 28 1 1.5616 2.4678 -1.2086 29 1 0.9740 -2.5565 -0.7320 30 1 1.7878 -3.7267 -2.7356 31 1 3.0869 -3.7451 -4.8635 32 1 4.3846 -1.0223 -5.4086 33 1 5.6228 -1.1636 -7.5076 34 1 6.5301 -2.2724 -10.8454 35 1 5.2520 -1.2168 -10.1976 36 1 7.4348 -0.0418 -10.2486 37 1 6.8650 -0.2580 -8.5765 38 1 9.1781 0.0312 -7.8024 39 1 10.4584 -1.0955 -8.3119 40 1 10.6011 0.9925 -9.4629 41 1 7.8591 -2.0430 -7.1383 42 1 9.1376 -3.0982 -7.7857 43 1 6.9543 -4.2733 -7.7349 44 1 7.5243 -4.0576 -9.4070 45 1 3.8210 -0.1523 -3.9694 46 1 2.9874 0.9987 -1.9627 There are 59 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 59 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_7207534_12360594.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 02:32:18 Heat of formation + Delta-G solvation = -86.008816 kcal Electronic energy + Delta-G solvation = -25898.202577 eV Core-core repulsion = 22139.834572 eV Total energy + Delta-G solvation = -3758.368004 eV No. of doubly occupied orbitals = 59 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 318.166 amu Computer time = 1.01 seconds Orbital eigenvalues (eV) -41.41785 -40.67443 -39.54816 -37.75746 -37.47199 -35.23458 -34.82321 -32.43776 -31.96437 -31.81798 -30.99745 -27.35863 -26.30969 -24.31265 -24.03446 -23.69864 -22.33129 -22.03061 -20.60471 -20.24794 -18.80781 -18.37415 -18.23900 -17.57379 -17.06155 -16.72444 -16.55380 -16.24995 -15.96892 -15.78885 -15.42653 -15.27101 -14.98425 -14.88126 -14.76746 -14.42580 -14.07371 -14.00034 -13.85768 -13.62700 -13.34006 -13.19974 -13.11441 -13.04017 -12.57581 -12.40049 -12.17935 -12.08704 -11.95248 -11.54776 -11.43817 -11.34805 -11.16367 -11.10354 -10.84485 -10.32645 -10.15210 -10.12446 -9.33836 -4.94389 -0.66074 0.22278 0.78515 1.29181 1.63483 1.95336 2.14465 2.16792 2.67196 3.26758 3.34733 3.46146 3.60133 3.64629 3.69226 3.72417 3.86695 3.87733 4.06400 4.07368 4.09677 4.19781 4.22690 4.30499 4.36602 4.38559 4.44863 4.47339 4.47918 4.63443 4.68885 4.70244 4.74198 4.84153 4.95171 4.95964 4.99159 5.05866 5.07052 5.11029 5.19531 5.26065 5.33899 5.38060 5.39685 5.46781 5.50447 5.75175 6.48914 6.87213 6.88374 7.16646 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.564 6.564 2 C -0.083 4.083 3 Si 0.774 3.226 4 C -0.081 4.081 5 C -0.102 4.102 6 C -0.098 4.098 7 C -0.081 4.081 8 C -0.019 4.019 9 C -0.210 4.210 10 C 0.543 3.457 11 O -0.589 6.589 12 N -0.704 5.704 13 C 0.145 3.855 14 H 0.069 0.931 15 C -0.121 4.121 16 C -0.106 4.106 17 C -0.086 4.086 18 H 0.069 0.931 19 C 0.077 3.923 20 O -0.594 6.594 21 C -0.105 4.105 22 C -0.126 4.126 23 C -0.097 4.097 24 C -0.145 4.145 25 H 0.404 0.596 26 H 0.096 0.904 27 H -0.285 1.285 28 H -0.297 1.297 29 H 0.142 0.858 30 H 0.147 0.853 31 H 0.129 0.871 32 H 0.156 0.844 33 H 0.412 0.588 34 H 0.082 0.918 35 H 0.075 0.925 36 H 0.067 0.933 37 H 0.069 0.931 38 H 0.056 0.944 39 H 0.049 0.951 40 H 0.395 0.605 41 H 0.067 0.933 42 H 0.067 0.933 43 H 0.050 0.950 44 H 0.078 0.922 45 H 0.152 0.848 46 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.833 5.418 5.140 7.690 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.374 6.374 2 C -0.193 4.193 3 Si 0.679 3.321 4 C -0.081 4.081 5 C -0.120 4.120 6 C -0.115 4.115 7 C -0.081 4.081 8 C -0.039 4.039 9 C -0.230 4.230 10 C 0.333 3.667 11 O -0.471 6.471 12 N -0.356 5.356 13 C 0.041 3.959 14 H 0.087 0.913 15 C -0.159 4.159 16 C -0.144 4.144 17 C -0.105 4.105 18 H 0.087 0.913 19 C 0.000 4.000 20 O -0.402 6.402 21 C -0.142 4.142 22 C -0.165 4.165 23 C -0.114 4.114 24 C -0.162 4.162 25 H 0.255 0.745 26 H 0.114 0.886 27 H -0.213 1.213 28 H -0.224 1.224 29 H 0.159 0.841 30 H 0.164 0.836 31 H 0.147 0.853 32 H 0.174 0.826 33 H 0.250 0.750 34 H 0.101 0.899 35 H 0.093 0.907 36 H 0.086 0.914 37 H 0.088 0.912 38 H 0.074 0.926 39 H 0.068 0.932 40 H 0.245 0.755 41 H 0.086 0.914 42 H 0.086 0.914 43 H 0.069 0.931 44 H 0.097 0.903 45 H 0.170 0.830 46 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges 1.773 4.543 3.699 6.120 hybrid contribution 0.591 -0.033 0.028 0.592 sum 2.364 4.510 3.726 6.309 Atomic orbital electron populations 1.86441 1.17088 1.82440 1.51440 1.24890 0.86014 1.11178 0.97224 0.94305 0.77372 0.75417 0.84961 1.19935 0.97227 0.94940 0.95968 1.21164 0.98990 0.93887 0.97983 1.21730 0.95669 1.00901 0.93238 1.19114 0.99657 0.94113 0.95234 1.22351 0.91645 0.99354 0.90534 1.23021 1.02998 1.02054 0.94957 1.18648 0.77984 0.86029 0.83995 1.90808 1.60010 1.18620 1.77684 1.45924 1.50789 1.16093 1.22806 1.20936 0.95410 0.94570 0.84996 0.91275 1.21796 0.99845 0.96906 0.97356 1.21478 0.93800 0.97477 1.01637 1.21144 0.95021 0.95419 0.98920 0.91292 1.22270 0.97145 0.91494 0.89126 1.86428 1.63987 1.49774 1.40025 1.21410 0.98637 0.96355 0.97814 1.21845 0.94991 0.97870 1.01796 1.21554 0.98959 0.93855 0.97080 1.20987 1.00300 0.99360 0.95573 0.74452 0.88614 1.21275 1.22449 0.84067 0.83561 0.85339 0.82618 0.74966 0.89916 0.90653 0.91438 0.91249 0.92622 0.93230 0.75509 0.91401 0.91395 0.93120 0.90339 0.83029 0.86025 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.56 0.52 12.74 -148.98 -1.90 -1.38 16 2 C -0.08 0.11 2.81 71.23 0.20 0.31 16 3 Si 0.77 -2.34 29.77 68.60 2.04 -0.30 16 4 C -0.08 -0.31 5.43 -19.79 -0.11 -0.42 16 5 C -0.10 -0.34 9.59 22.23 0.21 -0.13 16 6 C -0.10 -0.28 9.80 22.58 0.22 -0.06 16 7 C -0.08 -0.26 5.87 -20.15 -0.12 -0.38 16 8 C -0.02 -0.06 9.46 23.84 0.23 0.16 16 9 C -0.21 -0.28 9.41 23.62 0.22 -0.06 16 10 C 0.54 3.20 7.71 86.38 0.67 3.87 16 11 O -0.59 -8.68 15.89 -4.33 -0.07 -8.75 16 12 N -0.70 -0.15 4.23 -446.76 -1.89 -2.04 16 13 C 0.15 0.20 2.78 44.99 0.13 0.32 16 14 H 0.07 0.41 7.58 -2.39 -0.02 0.40 16 15 C -0.12 0.25 5.61 30.60 0.17 0.43 16 16 C -0.11 0.29 4.93 30.59 0.15 0.44 16 17 C -0.09 0.16 2.43 -10.79 -0.03 0.13 16 18 H 0.07 0.05 8.14 -2.39 -0.02 0.03 16 19 C 0.08 -0.21 6.43 71.98 0.46 0.25 16 20 O -0.59 0.11 13.20 -148.98 -1.97 -1.86 16 21 C -0.10 0.19 5.05 30.59 0.15 0.34 16 22 C -0.13 -0.17 5.60 30.59 0.17 0.00 16 23 C -0.10 -0.21 9.41 22.57 0.21 0.01 16 24 C -0.14 -0.57 8.65 22.23 0.19 -0.38 16 25 H 0.40 -4.63 8.74 -74.06 -0.65 -5.28 16 26 H 0.10 -0.51 7.96 -2.39 -0.02 -0.53 16 27 H -0.29 -0.54 7.11 99.48 0.71 0.17 16 28 H -0.30 -1.36 7.11 99.48 0.71 -0.65 16 29 H 0.14 0.10 8.06 -2.91 -0.02 0.08 16 30 H 0.15 -0.10 8.06 -2.91 -0.02 -0.12 16 31 H 0.13 0.67 7.52 -2.91 -0.02 0.65 16 32 H 0.16 -0.79 6.07 -2.91 -0.02 -0.81 16 33 H 0.41 -2.12 6.85 -92.70 -0.63 -2.76 16 34 H 0.08 -0.17 8.14 -2.39 -0.02 -0.19 16 35 H 0.07 -0.19 8.14 -2.39 -0.02 -0.21 16 36 H 0.07 -0.01 7.82 -2.39 -0.02 -0.03 16 37 H 0.07 -0.36 6.50 -2.39 -0.02 -0.38 16 38 H 0.06 -0.28 8.14 -2.39 -0.02 -0.30 16 39 H 0.05 -0.18 8.14 -2.39 -0.02 -0.20 16 40 H 0.40 -3.20 9.12 -74.06 -0.68 -3.88 16 41 H 0.07 -0.16 7.60 -2.39 -0.02 -0.18 16 42 H 0.07 -0.13 8.14 -2.39 -0.02 -0.15 16 43 H 0.05 0.30 8.14 -2.39 -0.02 0.28 16 44 H 0.08 0.03 8.14 -2.39 -0.02 0.01 16 45 H 0.15 -0.51 6.17 -2.91 -0.02 -0.53 16 46 H 0.12 0.33 4.85 -2.91 -0.01 0.32 16 Total: 0.00 -22.20 369.04 -1.55 -23.75 By element: Atomic # 1 Polarization: -13.35 SS G_CDS: -0.91 Total: -14.26 kcal Atomic # 6 Polarization: 1.69 SS G_CDS: 3.14 Total: 4.83 kcal Atomic # 7 Polarization: -0.15 SS G_CDS: -1.89 Total: -2.04 kcal Atomic # 8 Polarization: -8.05 SS G_CDS: -3.93 Total: -11.99 kcal Atomic # 14 Polarization: -2.34 SS G_CDS: 2.04 Total: -0.30 kcal Total: -22.20 -1.55 -23.75 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_7207534_12360594.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -62.255 kcal (2) G-P(sol) polarization free energy of solvation -22.204 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -84.459 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.550 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -23.754 kcal (6) G-S(sol) free energy of system = (1) + (5) -86.009 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.01 seconds