Wall clock time and date at job start Mon Mar 8 2021 02:32:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42901 * 1 3 3 Si 1.86298 * 109.47175 * 2 1 4 4 C 1.50704 * 109.47055 * 120.00240 * 2 1 3 5 5 C 1.34828 * 125.65392 * 64.94671 * 4 2 1 6 6 C 1.40797 * 107.05339 * 180.02562 * 5 4 2 7 7 C 1.36115 * 106.72767 * 0.02562 * 6 5 4 8 8 C 1.47570 * 125.94235 * 179.97438 * 7 6 5 9 9 C 1.39927 * 119.95475 * 359.73093 * 8 7 6 10 10 C 1.36423 * 120.27781 * 179.71718 * 9 8 7 11 11 C 1.39874 * 120.18626 * 0.54967 * 10 9 8 12 12 C 1.47290 * 120.04996 * 179.69702 * 11 10 9 13 13 O 1.21627 * 120.00103 * 180.02562 * 12 11 10 14 14 N 1.34779 * 120.00139 * 0.02806 * 12 11 10 15 15 C 1.46490 * 120.00468 * 179.97438 * 14 12 11 16 16 H 1.09004 * 109.47161 * 34.99701 * 15 14 12 17 17 C 1.53002 * 109.47371 * 154.99855 * 15 14 12 18 18 C 1.53005 * 109.46772 * 60.00154 * 17 15 14 19 19 C 1.53002 * 109.47223 * 60.00011 * 18 17 15 20 20 H 1.09001 * 109.47004 * 59.99893 * 19 18 17 21 21 C 1.52992 * 109.47133 * 179.97438 * 19 18 17 22 22 O 1.42907 * 109.47125 * 185.00321 * 21 19 18 23 23 C 1.52995 * 109.47150 * 300.00329 * 19 18 17 24 24 C 1.53002 * 109.47839 * 59.99709 * 23 19 18 25 25 C 1.40413 * 119.90507 * 359.72569 * 11 10 9 26 26 O 1.35679 * 120.13587 * 179.97438 * 25 11 10 27 27 C 1.38267 * 119.72709 * 359.97438 * 25 11 10 28 28 O 1.34228 * 125.65139 * 244.97303 * 4 2 1 29 29 H 0.96703 * 113.99513 * 300.00016 * 1 2 3 30 30 H 1.09002 * 109.46938 * 240.00039 * 2 1 3 31 31 H 1.48503 * 109.99810 * 178.68039 * 3 2 1 32 32 H 1.48497 * 110.00134 * 299.99858 * 3 2 1 33 33 H 1.08000 * 126.47903 * 0.04485 * 5 4 2 34 34 H 1.07994 * 126.63968 * 180.26218 * 6 5 4 35 35 H 1.07998 * 119.86155 * 359.97438 * 9 8 7 36 36 H 1.07996 * 119.91094 * 180.29785 * 10 9 8 37 37 H 0.96999 * 119.99453 * 0.02562 * 14 12 11 38 38 H 1.09001 * 109.47051 * 179.97438 * 17 15 14 39 39 H 1.09000 * 109.47360 * 300.00294 * 17 15 14 40 40 H 1.09004 * 109.46781 * 180.02562 * 18 17 15 41 41 H 1.08996 * 109.46869 * 300.00290 * 18 17 15 42 42 H 1.09006 * 109.47414 * 304.99895 * 21 19 18 43 43 H 1.08995 * 109.47248 * 65.00170 * 21 19 18 44 44 H 0.96703 * 113.99838 * 180.02562 * 22 21 19 45 45 H 1.09000 * 109.47273 * 179.97438 * 23 19 18 46 46 H 1.09001 * 109.46812 * 299.99682 * 23 19 18 47 47 H 1.08992 * 109.47704 * 180.02562 * 24 23 19 48 48 H 1.08996 * 109.46592 * 59.99796 * 24 23 19 49 49 H 0.96695 * 114.00316 * 270.02626 * 26 25 11 50 50 H 1.08002 * 120.09557 * 179.97438 * 27 25 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4290 0.0000 0.0000 3 14 2.0500 1.7564 0.0000 4 6 1.9313 -0.7105 1.2305 5 6 1.7559 -2.0178 1.5098 6 6 2.3795 -2.2627 2.7481 7 6 2.9070 -1.0783 3.1622 8 6 3.6556 -0.8539 4.4140 9 6 3.8707 -1.9159 5.2994 10 6 4.5668 -1.7171 6.4557 11 6 5.0608 -0.4468 6.7697 12 6 5.8062 -0.2341 8.0222 13 8 6.2350 0.8710 8.2946 14 7 6.0133 -1.2642 8.8663 15 6 6.7552 -1.0529 10.1117 16 1 6.5323 -0.0605 10.5035 17 6 6.3421 -2.1107 11.1372 18 6 6.6551 -3.5037 10.5872 19 6 8.1559 -3.6183 10.3125 20 1 8.7079 -3.4611 11.2392 21 6 8.4689 -5.0115 9.7631 22 8 9.8827 -5.1590 9.6163 23 6 8.5689 -2.5605 9.2872 24 6 8.2560 -1.1674 9.8371 25 6 4.8445 0.6257 5.8896 26 8 5.3211 1.8600 6.1898 27 6 4.1438 0.4187 4.7157 28 8 2.6272 -0.1465 2.2302 29 1 -0.3932 0.4417 0.7651 30 1 1.7923 -0.5138 -0.8900 31 1 3.5346 1.7702 0.0321 32 1 1.5616 2.4679 -1.2085 33 1 1.2357 -2.7407 0.8989 34 1 2.4327 -3.2083 3.2671 35 1 3.4876 -2.8979 5.0644 36 1 4.7335 -2.5420 7.1325 37 1 5.6717 -2.1456 8.6488 38 1 6.8945 -1.9537 12.0637 39 1 5.2729 -2.0291 11.3328 40 1 6.3604 -4.2573 11.3175 41 1 6.1031 -3.6609 9.6605 42 1 8.0946 -5.7670 10.4539 43 1 7.9879 -5.1360 8.7930 44 1 10.1545 -6.0205 9.2712 45 1 9.6382 -2.6418 9.0918 46 1 8.0169 -2.7177 8.3605 47 1 8.5498 -0.4139 9.1065 48 1 8.8080 -1.0103 10.7637 49 1 4.7044 2.4078 6.6944 50 1 3.9737 1.2395 4.0347 There are 69 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 69 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_7207534_12807986.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 02:32:38 Heat of formation + Delta-G solvation = -120.792305 kcal Electronic energy + Delta-G solvation = -33947.237501 eV Core-core repulsion = 29293.544507 eV Total energy + Delta-G solvation = -4653.692995 eV No. of doubly occupied orbitals = 69 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 374.165 amu Computer time = 1.37 seconds Orbital eigenvalues (eV) -43.74813 -41.76274 -40.50064 -39.11099 -38.09734 -37.83181 -37.39160 -34.90676 -34.23026 -33.47190 -31.82743 -31.60826 -31.19207 -30.26792 -27.17084 -26.26772 -24.55040 -24.05548 -23.66691 -22.67886 -22.18480 -22.01037 -21.39699 -20.19284 -19.74879 -18.92741 -18.51910 -18.19175 -17.72282 -17.43469 -17.16906 -16.76322 -16.49534 -16.36051 -16.18972 -15.91534 -15.74589 -15.60776 -15.43399 -14.95017 -14.75207 -14.64615 -14.40144 -14.29574 -13.99603 -13.91252 -13.87614 -13.60284 -13.56966 -13.39499 -13.18392 -13.01427 -12.82806 -12.70883 -12.42364 -12.27364 -12.13260 -11.88508 -11.55063 -11.30498 -11.13648 -11.09313 -10.90130 -10.79689 -10.73545 -10.58460 -10.08145 -9.95042 -9.01604 -5.06496 -0.79100 0.14526 0.64395 1.12678 1.39350 1.45928 1.74159 1.86442 1.93787 2.09364 2.65166 3.01739 3.28827 3.32556 3.41543 3.60642 3.62241 3.71412 3.75661 3.87150 3.92910 3.98479 4.00387 4.06636 4.21543 4.29238 4.30934 4.39588 4.43144 4.43604 4.49650 4.51411 4.62933 4.67552 4.70437 4.74714 4.77300 4.79589 4.88536 5.02116 5.04070 5.07151 5.11194 5.12155 5.16453 5.21119 5.24588 5.41136 5.42309 5.44603 5.51749 5.54782 5.96458 6.49884 6.59822 6.70984 6.91318 7.19744 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.540 6.540 2 C -0.023 4.023 3 Si 0.769 3.231 4 C -0.053 4.053 5 C -0.184 4.184 6 C -0.172 4.172 7 C 0.006 3.994 8 C 0.025 3.975 9 C -0.109 4.109 10 C -0.052 4.052 11 C -0.179 4.179 12 C 0.555 3.445 13 O -0.564 6.564 14 N -0.704 5.704 15 C 0.148 3.852 16 H 0.071 0.929 17 C -0.119 4.119 18 C -0.110 4.110 19 C -0.087 4.087 20 H 0.067 0.933 21 C 0.075 3.925 22 O -0.599 6.599 23 C -0.101 4.101 24 C -0.130 4.130 25 C 0.160 3.840 26 O -0.496 6.496 27 C -0.152 4.152 28 O -0.175 6.175 29 H 0.400 0.600 30 H 0.138 0.862 31 H -0.299 1.299 32 H -0.277 1.277 33 H 0.166 0.834 34 H 0.182 0.818 35 H 0.170 0.830 36 H 0.169 0.831 37 H 0.411 0.589 38 H 0.084 0.916 39 H 0.086 0.914 40 H 0.086 0.914 41 H 0.077 0.923 42 H 0.058 0.942 43 H 0.056 0.944 44 H 0.395 0.605 45 H 0.048 0.952 46 H 0.062 0.938 47 H 0.040 0.960 48 H 0.074 0.926 49 H 0.409 0.591 50 H 0.140 0.860 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.896 -7.556 2.850 9.999 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.348 6.348 2 C -0.134 4.134 3 Si 0.674 3.326 4 C -0.103 4.103 5 C -0.203 4.203 6 C -0.191 4.191 7 C -0.044 4.044 8 C 0.024 3.976 9 C -0.127 4.127 10 C -0.071 4.071 11 C -0.183 4.183 12 C 0.343 3.657 13 O -0.444 6.444 14 N -0.358 5.358 15 C 0.044 3.956 16 H 0.089 0.911 17 C -0.157 4.157 18 C -0.147 4.147 19 C -0.106 4.106 20 H 0.086 0.914 21 C -0.002 4.002 22 O -0.408 6.408 23 C -0.139 4.139 24 C -0.168 4.168 25 C 0.114 3.886 26 O -0.309 6.309 27 C -0.171 4.171 28 O -0.072 6.072 29 H 0.250 0.750 30 H 0.155 0.845 31 H -0.226 1.226 32 H -0.203 1.203 33 H 0.183 0.817 34 H 0.200 0.800 35 H 0.187 0.813 36 H 0.187 0.813 37 H 0.250 0.750 38 H 0.103 0.897 39 H 0.104 0.896 40 H 0.104 0.896 41 H 0.096 0.904 42 H 0.077 0.923 43 H 0.074 0.926 44 H 0.244 0.756 45 H 0.067 0.933 46 H 0.080 0.920 47 H 0.059 0.941 48 H 0.093 0.907 49 H 0.269 0.731 50 H 0.158 0.842 Dipole moment (debyes) X Y Z Total from point charges -4.469 -5.756 2.066 7.575 hybrid contribution 0.009 -0.934 -0.461 1.042 sum -4.460 -6.691 1.604 8.200 Atomic orbital electron populations 1.86534 1.15816 1.82077 1.50353 1.24393 0.85452 1.10794 0.92752 0.93374 0.78029 0.75875 0.85322 1.23227 1.00478 0.94359 0.92282 1.21834 1.04183 0.95766 0.98493 1.22239 1.00838 0.98938 0.97067 1.20574 1.04543 0.87963 0.91287 1.17941 0.95499 0.93902 0.90217 1.21046 0.99305 0.99359 0.92964 1.21133 0.93911 0.95112 0.96920 1.20564 1.05460 0.96144 0.96133 1.18254 0.79330 0.84478 0.83656 1.90819 1.51940 1.25584 1.76034 1.45898 1.56551 1.12107 1.21223 1.20931 0.90472 1.00088 0.84116 0.91094 1.21791 1.02919 0.93349 0.97665 1.21521 0.93686 0.97109 1.02389 1.21178 0.97197 0.93454 0.98768 0.91438 1.22340 0.81064 0.96750 1.00039 1.86451 1.23749 1.41600 1.88967 1.21388 1.00655 0.93466 0.98367 1.21889 0.96251 0.97304 1.01390 1.18494 0.92227 0.85753 0.92159 1.84732 1.45736 1.23614 1.76818 1.21585 0.99415 0.98190 0.97908 1.83921 1.57946 1.38557 1.26822 0.74969 0.84478 1.22576 1.20336 0.81674 0.80040 0.81258 0.81327 0.75022 0.89709 0.89569 0.89576 0.90438 0.92329 0.92574 0.75591 0.93297 0.91977 0.94149 0.90724 0.73116 0.84235 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.54 1.09 12.88 -148.98 -1.92 -0.83 16 2 C -0.02 0.03 2.98 71.24 0.21 0.25 16 3 Si 0.77 -0.54 32.11 68.60 2.20 1.66 16 4 C -0.05 -0.04 6.21 24.90 0.15 0.11 16 5 C -0.18 0.07 10.78 22.11 0.24 0.30 16 6 C -0.17 0.32 10.26 22.40 0.23 0.55 16 7 C 0.01 0.01 7.02 24.24 0.17 0.18 16 8 C 0.03 0.00 5.87 -20.08 -0.12 -0.11 16 9 C -0.11 0.58 9.48 22.26 0.21 0.79 16 10 C -0.05 0.27 9.47 22.24 0.21 0.48 16 11 C -0.18 -0.43 5.89 -19.97 -0.12 -0.55 16 12 C 0.55 3.15 7.72 86.62 0.67 3.82 16 13 O -0.56 -8.17 14.80 16.87 0.25 -7.92 16 14 N -0.70 1.05 4.18 -445.92 -1.86 -0.82 16 15 C 0.15 -0.04 2.78 45.00 0.13 0.09 16 16 H 0.07 0.30 7.58 -2.38 -0.02 0.28 16 17 C -0.12 0.75 5.61 30.60 0.17 0.92 16 18 C -0.11 0.91 5.03 30.60 0.15 1.06 16 19 C -0.09 0.28 2.43 -10.80 -0.03 0.26 16 20 H 0.07 -0.03 8.14 -2.39 -0.02 -0.05 16 21 C 0.08 -0.32 6.43 71.98 0.46 0.14 16 22 O -0.60 -0.19 13.20 -148.98 -1.97 -2.15 16 23 C -0.10 -0.07 4.94 30.59 0.15 0.08 16 24 C -0.13 -0.35 5.60 30.60 0.17 -0.18 16 25 C 0.16 0.84 6.71 22.81 0.15 0.99 16 26 O -0.50 -3.96 11.56 -68.98 -0.80 -4.75 16 27 C -0.15 -0.47 9.65 22.61 0.22 -0.25 16 28 O -0.17 -0.50 8.79 -5.92 -0.05 -0.55 16 29 H 0.40 -3.84 8.70 -74.06 -0.64 -4.49 16 30 H 0.14 -0.33 7.96 -2.39 -0.02 -0.35 16 31 H -0.30 -2.08 7.11 99.48 0.71 -1.37 16 32 H -0.28 -1.22 7.11 99.48 0.71 -0.51 16 33 H 0.17 -0.49 8.06 -2.91 -0.02 -0.51 16 34 H 0.18 -1.48 7.24 -2.91 -0.02 -1.50 16 35 H 0.17 -1.99 6.95 -2.91 -0.02 -2.01 16 36 H 0.17 -2.19 6.38 -2.91 -0.02 -2.21 16 37 H 0.41 -3.28 4.87 -92.71 -0.45 -3.73 16 38 H 0.08 -0.51 8.14 -2.39 -0.02 -0.53 16 39 H 0.09 -0.69 8.14 -2.39 -0.02 -0.71 16 40 H 0.09 -0.87 8.14 -2.39 -0.02 -0.89 16 41 H 0.08 -0.89 6.50 -2.39 -0.02 -0.90 16 42 H 0.06 -0.39 8.14 -2.38 -0.02 -0.41 16 43 H 0.06 -0.37 8.14 -2.39 -0.02 -0.39 16 44 H 0.39 -3.08 9.12 -74.06 -0.68 -3.76 16 45 H 0.05 0.26 7.82 -2.39 -0.02 0.24 16 46 H 0.06 -0.01 7.60 -2.39 -0.02 -0.03 16 47 H 0.04 0.35 8.14 -2.39 -0.02 0.33 16 48 H 0.07 0.16 8.14 -2.39 -0.02 0.14 16 49 H 0.41 0.23 9.06 -74.06 -0.67 -0.44 16 50 H 0.14 0.38 7.90 -2.91 -0.02 0.36 16 Total: 0.00 -27.81 407.47 -2.08 -29.90 By element: Atomic # 1 Polarization: -22.08 SS G_CDS: -1.38 Total: -23.46 kcal Atomic # 6 Polarization: 5.49 SS G_CDS: 3.44 Total: 8.93 kcal Atomic # 7 Polarization: 1.05 SS G_CDS: -1.86 Total: -0.82 kcal Atomic # 8 Polarization: -11.72 SS G_CDS: -4.48 Total: -16.21 kcal Atomic # 14 Polarization: -0.54 SS G_CDS: 2.20 Total: 1.66 kcal Total: -27.81 -2.08 -29.90 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_7207534_12807986.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -90.897 kcal (2) G-P(sol) polarization free energy of solvation -27.811 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -118.708 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.084 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -29.895 kcal (6) G-S(sol) free energy of system = (1) + (5) -120.792 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.37 seconds