Wall clock time and date at job start Mon Mar 8 2021 02:33:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50693 * 1 3 3 C 1.38973 * 119.95580 * 2 1 4 4 O 1.35709 * 119.91174 * 0.03910 * 3 2 1 5 5 C 1.39021 * 120.17708 * 180.02562 * 3 2 1 6 6 C 1.50698 * 119.95272 * 179.97438 * 5 3 2 7 7 O 1.42900 * 109.47196 * 75.00309 * 6 5 3 8 8 Si 1.86304 * 109.46991 * 194.99742 * 6 5 3 9 9 C 1.37680 * 120.08722 * 0.02562 * 5 3 2 10 10 C 1.39754 * 119.90905 * 359.68218 * 9 5 3 11 11 C 1.47606 * 120.08630 * 180.31893 * 10 9 5 12 12 O 1.21583 * 119.99901 * 0.27457 * 11 10 9 13 13 N 1.34771 * 119.99905 * 180.28056 * 11 10 9 14 14 C 1.46503 * 120.00001 * 179.97438 * 13 11 10 15 15 H 1.08999 * 109.47091 * 324.99738 * 14 13 11 16 16 C 1.53003 * 109.46977 * 84.99292 * 14 13 11 17 17 C 1.53006 * 109.47006 * 60.00591 * 16 14 13 18 18 C 1.53000 * 109.47250 * 59.99350 * 17 16 14 19 19 H 1.09003 * 109.46760 * 60.00476 * 18 17 16 20 20 C 1.53001 * 109.46955 * 180.02562 * 18 17 16 21 21 O 1.42903 * 109.47072 * 295.00084 * 20 18 17 22 22 C 1.52991 * 109.47226 * 300.00494 * 18 17 16 23 23 C 1.52995 * 109.47495 * 204.99545 * 14 13 11 24 24 C 1.37726 * 119.95713 * 180.02562 * 2 1 3 25 25 H 1.09005 * 109.47594 * 269.98141 * 1 2 3 26 26 H 1.08999 * 109.47434 * 29.98428 * 1 2 3 27 27 H 1.09001 * 109.47343 * 149.97952 * 1 2 3 28 28 H 0.96699 * 114.00339 * 90.00441 * 4 3 2 29 29 H 1.09002 * 109.47796 * 314.99878 * 6 5 3 30 30 H 0.96700 * 114.00520 * 180.02562 * 7 6 5 31 31 H 1.48503 * 110.00160 * 178.68308 * 8 6 5 32 32 H 1.48501 * 109.99927 * 300.00346 * 8 6 5 33 33 H 1.07998 * 120.03941 * 179.97438 * 9 5 3 34 34 H 0.96997 * 120.00334 * 359.97438 * 13 11 10 35 35 H 1.09003 * 109.47219 * 180.02562 * 16 14 13 36 36 H 1.09002 * 109.47633 * 300.00441 * 16 14 13 37 37 H 1.09008 * 109.46482 * 299.99604 * 17 16 14 38 38 H 1.08998 * 109.47070 * 179.97438 * 17 16 14 39 39 H 1.08997 * 109.47295 * 55.00270 * 20 18 17 40 40 H 1.09001 * 109.46964 * 175.00044 * 20 18 17 41 41 H 0.96701 * 113.99687 * 179.97438 * 21 20 18 42 42 H 1.09003 * 109.47236 * 299.99690 * 22 18 17 43 43 H 1.09004 * 109.47370 * 180.02562 * 22 18 17 44 44 H 1.08998 * 109.46986 * 59.99832 * 23 14 13 45 45 H 1.08994 * 109.47417 * 180.02562 * 23 14 13 46 46 H 1.08002 * 120.04103 * 359.97438 * 24 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.2009 1.2041 0.0000 4 8 1.5196 2.3778 0.0008 5 6 3.5911 1.2095 -0.0005 6 6 4.3384 2.5181 -0.0011 7 8 4.2724 3.1049 1.3002 8 14 6.1196 2.2157 -0.4563 9 6 4.2859 0.0208 -0.0016 10 6 3.5917 -1.1921 0.0046 11 6 4.3327 -2.4687 0.0106 12 8 5.5485 -2.4659 0.0152 13 7 3.6615 -3.6374 0.0108 14 6 4.3970 -4.9045 0.0162 15 1 5.3094 -4.7974 -0.5703 16 6 4.7568 -5.2791 1.4553 17 6 3.4760 -5.4295 2.2787 18 6 2.6034 -6.5282 1.6684 19 1 3.1506 -7.4709 1.6725 20 6 1.3223 -6.6780 2.4914 21 8 1.6502 -7.1404 3.8032 22 6 2.2437 -6.1535 0.2294 23 6 3.5245 -6.0032 -0.5939 24 6 2.1947 -1.1933 -0.0005 25 1 -0.3634 -0.0003 1.0277 26 1 -0.3634 0.8901 -0.5136 27 1 -0.3634 -0.8898 -0.5141 28 1 1.3227 2.7177 0.8844 29 1 3.8874 3.1939 -0.7278 30 1 4.7330 3.9520 1.3735 31 1 6.8603 3.5024 -0.4914 32 1 6.7459 1.2958 0.5269 33 1 5.3658 0.0259 -0.0024 34 1 2.6916 -3.6397 0.0074 35 1 5.3044 -6.2216 1.4593 36 1 5.3784 -4.4963 1.8901 37 1 2.9288 -4.4867 2.2746 38 1 3.7323 -5.6968 3.3038 39 1 0.8204 -5.7130 2.5613 40 1 0.6615 -7.3970 2.0073 41 1 0.8843 -7.2580 4.3816 42 1 1.6965 -5.2107 0.2254 43 1 1.6216 -6.9360 -0.2052 44 1 3.2681 -5.7363 -1.6192 45 1 4.0715 -6.9460 -0.5895 46 1 1.6546 -2.1286 -0.0005 There are 60 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 60 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_7207534_13287732.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 02:33:09 Heat of formation + Delta-G solvation = -147.758414 kcal Electronic energy + Delta-G solvation = -28230.405508 eV Core-core repulsion = 24278.903789 eV Total energy + Delta-G solvation = -3951.501719 eV No. of doubly occupied orbitals = 60 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 322.166 amu Computer time = 1.01 seconds Orbital eigenvalues (eV) -41.85604 -40.90042 -39.49078 -37.91422 -37.62784 -37.37134 -34.95195 -34.08190 -32.46976 -31.80332 -30.90929 -27.98909 -26.96714 -26.39948 -24.83714 -23.66523 -22.25001 -21.91138 -21.71356 -20.23381 -19.47491 -18.81961 -18.59239 -18.20450 -17.68104 -16.72037 -16.64177 -16.57965 -16.18940 -15.93651 -15.71649 -15.47568 -15.15729 -14.99914 -14.78107 -14.67050 -14.27518 -14.03619 -13.92097 -13.68405 -13.52363 -13.46958 -13.21952 -13.06834 -12.97924 -12.84598 -12.62477 -12.42408 -12.13915 -11.98976 -11.56805 -11.49798 -11.32004 -11.14844 -11.08270 -10.80069 -10.55945 -10.19775 -9.97702 -9.65478 -5.03777 -0.40755 0.05379 1.17827 1.46164 1.59328 1.83574 2.03951 2.52599 3.12534 3.23315 3.32025 3.54271 3.64579 3.66893 3.71229 3.75346 3.90390 3.98701 4.05459 4.15523 4.28091 4.35051 4.40126 4.42648 4.45928 4.48931 4.50370 4.62869 4.66777 4.71426 4.75147 4.76697 4.82791 5.00927 5.03263 5.03791 5.10263 5.12183 5.15875 5.20614 5.22962 5.31736 5.39896 5.42862 5.49724 5.59288 6.43777 6.50567 6.68137 6.90989 7.11378 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.111 4.111 2 C -0.118 4.118 3 C 0.155 3.845 4 O -0.493 6.493 5 C -0.116 4.116 6 C -0.063 4.063 7 O -0.551 6.551 8 Si 0.736 3.264 9 C -0.067 4.067 10 C -0.151 4.151 11 C 0.558 3.442 12 O -0.580 6.580 13 N -0.701 5.701 14 C 0.146 3.854 15 H 0.073 0.927 16 C -0.130 4.130 17 C -0.101 4.101 18 C -0.087 4.087 19 H 0.068 0.932 20 C 0.076 3.924 21 O -0.599 6.599 22 C -0.110 4.110 23 C -0.119 4.119 24 C -0.055 4.055 25 H 0.083 0.917 26 H 0.073 0.927 27 H 0.088 0.912 28 H 0.411 0.589 29 H 0.099 0.901 30 H 0.397 0.603 31 H -0.271 1.271 32 H -0.308 1.308 33 H 0.126 0.874 34 H 0.412 0.588 35 H 0.076 0.924 36 H 0.040 0.960 37 H 0.061 0.939 38 H 0.049 0.951 39 H 0.055 0.945 40 H 0.059 0.941 41 H 0.395 0.605 42 H 0.075 0.925 43 H 0.086 0.914 44 H 0.086 0.914 45 H 0.086 0.914 46 H 0.163 0.837 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.659 -1.134 -2.386 9.053 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C -0.118 4.118 3 C 0.110 3.890 4 O -0.307 6.307 5 C -0.117 4.117 6 C -0.173 4.173 7 O -0.362 6.362 8 Si 0.643 3.357 9 C -0.086 4.086 10 C -0.154 4.154 11 C 0.346 3.654 12 O -0.461 6.461 13 N -0.354 5.354 14 C 0.041 3.959 15 H 0.091 0.909 16 C -0.168 4.168 17 C -0.139 4.139 18 C -0.106 4.106 19 H 0.087 0.913 20 C -0.002 4.002 21 O -0.407 6.407 22 C -0.148 4.148 23 C -0.157 4.157 24 C -0.074 4.074 25 H 0.101 0.899 26 H 0.092 0.908 27 H 0.107 0.893 28 H 0.271 0.729 29 H 0.116 0.884 30 H 0.248 0.752 31 H -0.197 1.197 32 H -0.236 1.236 33 H 0.144 0.856 34 H 0.251 0.749 35 H 0.095 0.905 36 H 0.059 0.941 37 H 0.079 0.921 38 H 0.068 0.932 39 H 0.073 0.927 40 H 0.077 0.923 41 H 0.244 0.756 42 H 0.094 0.906 43 H 0.105 0.895 44 H 0.104 0.896 45 H 0.105 0.895 46 H 0.181 0.819 Dipole moment (debyes) X Y Z Total from point charges -6.703 -1.641 -2.877 7.477 hybrid contribution -0.402 1.067 1.839 2.164 sum -7.105 -0.574 -1.038 7.203 Atomic orbital electron populations 1.20776 0.87866 1.04461 1.03630 1.20451 0.98516 0.91501 1.01354 1.18411 0.88487 0.86145 0.95999 1.84608 1.75368 1.35531 1.35181 1.19604 0.93763 0.93807 1.04530 1.24570 1.09986 0.94394 0.88376 1.86488 1.78029 1.41716 1.29947 0.94096 0.73717 0.78920 0.89016 1.21056 1.00199 0.91237 0.96092 1.19815 0.94539 0.92514 1.08576 1.18382 0.86790 0.84640 0.75538 1.90782 1.15355 1.88137 1.51787 1.45892 1.10886 1.04638 1.73970 1.20994 0.95794 0.82885 0.96184 0.90920 1.21895 0.98016 1.01370 0.95550 1.21396 0.95511 0.98568 0.98439 1.21176 0.95618 0.98903 0.94866 0.91314 1.22336 0.96343 0.98597 0.82912 1.86449 1.39211 1.89745 1.25291 1.21523 0.97384 1.02976 0.92872 1.21790 0.96229 0.97922 0.99772 1.21350 0.91433 0.99129 0.95443 0.89852 0.90835 0.89306 0.72861 0.88353 0.75214 1.19732 1.23590 0.85644 0.74907 0.90526 0.94083 0.92051 0.93169 0.92652 0.92318 0.75597 0.90599 0.89517 0.89566 0.89521 0.81932 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 0.72 9.78 71.23 0.70 1.42 16 2 C -0.12 0.17 5.89 -19.81 -0.12 0.05 16 3 C 0.16 0.29 6.66 22.63 0.15 0.44 16 4 O -0.49 0.28 11.84 -90.30 -1.07 -0.79 16 5 C -0.12 -0.54 5.30 -19.81 -0.11 -0.64 16 6 C -0.06 -0.13 2.36 71.24 0.17 0.03 16 7 O -0.55 -1.33 12.86 -148.98 -1.92 -3.24 16 8 Si 0.74 2.50 30.19 68.60 2.07 4.58 16 9 C -0.07 -0.50 8.20 22.50 0.18 -0.31 16 10 C -0.15 -0.70 5.87 -20.08 -0.12 -0.82 16 11 C 0.56 4.09 7.73 86.72 0.67 4.76 16 12 O -0.58 -9.45 16.00 -3.98 -0.06 -9.52 16 13 N -0.70 0.16 4.18 -445.64 -1.86 -1.71 16 14 C 0.15 0.06 2.78 44.99 0.13 0.19 16 15 H 0.07 0.35 7.58 -2.39 -0.02 0.33 16 16 C -0.13 -0.38 5.60 30.60 0.17 -0.21 16 17 C -0.10 -0.09 4.94 30.60 0.15 0.06 16 18 C -0.09 0.26 2.43 -10.80 -0.03 0.24 16 19 H 0.07 -0.02 8.14 -2.39 -0.02 -0.04 16 20 C 0.08 -0.30 6.43 71.98 0.46 0.16 16 21 O -0.60 -0.20 13.20 -148.98 -1.97 -2.17 16 22 C -0.11 0.86 5.03 30.59 0.15 1.01 16 23 C -0.12 0.68 5.61 30.59 0.17 0.85 16 24 C -0.06 0.11 9.18 22.50 0.21 0.32 16 25 H 0.08 -0.68 8.14 -2.38 -0.02 -0.70 16 26 H 0.07 -0.36 7.52 -2.39 -0.02 -0.38 16 27 H 0.09 -0.86 8.08 -2.39 -0.02 -0.88 16 28 H 0.41 -2.81 9.06 -74.06 -0.67 -3.48 16 29 H 0.10 -0.10 7.82 -2.39 -0.02 -0.12 16 30 H 0.40 -2.12 8.74 -74.06 -0.65 -2.77 16 31 H -0.27 -1.48 7.11 99.48 0.71 -0.77 16 32 H -0.31 -3.96 6.75 99.48 0.67 -3.29 16 33 H 0.13 1.32 4.47 -2.91 -0.01 1.31 16 34 H 0.41 -2.71 4.89 -92.71 -0.45 -3.16 16 35 H 0.08 0.16 8.14 -2.39 -0.02 0.14 16 36 H 0.04 0.36 8.14 -2.39 -0.02 0.34 16 37 H 0.06 0.01 7.60 -2.38 -0.02 0.00 16 38 H 0.05 0.26 7.82 -2.39 -0.02 0.25 16 39 H 0.06 -0.35 8.14 -2.39 -0.02 -0.37 16 40 H 0.06 -0.38 8.14 -2.39 -0.02 -0.40 16 41 H 0.39 -3.06 9.12 -74.06 -0.68 -3.74 16 42 H 0.08 -0.81 6.51 -2.39 -0.02 -0.82 16 43 H 0.09 -0.84 8.14 -2.39 -0.02 -0.86 16 44 H 0.09 -0.63 8.14 -2.39 -0.02 -0.65 16 45 H 0.09 -0.50 8.14 -2.39 -0.02 -0.52 16 46 H 0.16 -1.55 6.39 -2.91 -0.02 -1.57 16 Total: 0.00 -24.22 364.81 -3.26 -27.48 By element: Atomic # 1 Polarization: -20.76 SS G_CDS: -1.40 Total: -22.17 kcal Atomic # 6 Polarization: 4.59 SS G_CDS: 2.95 Total: 7.54 kcal Atomic # 7 Polarization: 0.16 SS G_CDS: -1.86 Total: -1.71 kcal Atomic # 8 Polarization: -10.71 SS G_CDS: -5.01 Total: -15.72 kcal Atomic # 14 Polarization: 2.50 SS G_CDS: 2.07 Total: 4.58 kcal Total: -24.22 -3.26 -27.48 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_7207534_13287732.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -120.279 kcal (2) G-P(sol) polarization free energy of solvation -24.218 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -144.498 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.261 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -27.479 kcal (6) G-S(sol) free energy of system = (1) + (5) -147.758 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.01 seconds