Wall clock time and date at job start Mon Mar 8 2021 02:33:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.36414 * 125.80277 * 2 1 4 4 C 1.47385 * 127.19072 * 0.02562 * 3 2 1 5 5 O 1.21609 * 120.00001 * 359.97438 * 4 3 2 6 6 N 1.34780 * 120.00140 * 180.02562 * 4 3 2 7 7 C 1.46495 * 120.00095 * 180.02562 * 6 4 3 8 8 H 1.09004 * 109.47186 * 34.99611 * 7 6 4 9 9 C 1.53003 * 109.47146 * 154.99854 * 7 6 4 10 10 C 1.52994 * 109.47207 * 59.99818 * 9 7 6 11 11 C 1.53001 * 109.47446 * 60.00014 * 10 9 7 12 12 H 1.09007 * 109.46943 * 59.99736 * 11 10 9 13 13 C 1.52994 * 109.47446 * 179.97438 * 11 10 9 14 14 O 1.42898 * 109.47200 * 184.99890 * 13 11 10 15 15 C 1.53003 * 109.46906 * 300.00170 * 11 10 9 16 16 C 1.53001 * 109.47184 * 59.99966 * 15 11 10 17 17 C 1.47022 * 105.61755 * 180.02562 * 3 2 1 18 18 C 1.34172 * 105.95119 * 359.97438 * 17 3 2 19 19 C 1.50706 * 125.43260 * 179.97438 * 18 17 3 20 20 O 1.42895 * 109.46938 * 299.99625 * 19 18 17 21 21 Si 1.86299 * 109.46748 * 179.97438 * 19 18 17 22 22 O 1.33649 * 125.80335 * 180.32190 * 2 1 3 23 23 H 1.08995 * 109.47064 * 90.00335 * 1 2 3 24 24 H 1.09000 * 109.47010 * 210.00076 * 1 2 3 25 25 H 1.09005 * 109.46787 * 330.00253 * 1 2 3 26 26 H 0.97003 * 119.99377 * 359.97438 * 6 4 3 27 27 H 1.08993 * 109.46820 * 180.02562 * 9 7 6 28 28 H 1.08996 * 109.46981 * 299.99995 * 9 7 6 29 29 H 1.09001 * 109.47604 * 180.02562 * 10 9 7 30 30 H 1.09007 * 109.47265 * 299.99947 * 10 9 7 31 31 H 1.09003 * 109.46970 * 304.99915 * 13 11 10 32 32 H 1.09000 * 109.47089 * 65.00129 * 13 11 10 33 33 H 0.96705 * 114.00337 * 180.02562 * 14 13 11 34 34 H 1.09006 * 109.47034 * 179.97438 * 15 11 10 35 35 H 1.08998 * 109.47220 * 299.99682 * 15 11 10 36 36 H 1.09004 * 109.46851 * 179.97438 * 16 15 11 37 37 H 1.08998 * 109.47274 * 59.99749 * 16 15 11 38 38 H 1.08003 * 127.02179 * 180.02562 * 17 3 2 39 39 H 1.09000 * 109.47161 * 59.99891 * 19 18 17 40 40 H 0.96698 * 114.00355 * 299.99977 * 20 19 18 41 41 H 1.48504 * 110.00212 * 58.68085 * 21 19 18 42 42 H 1.48504 * 109.99999 * 179.97438 * 21 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3050 1.1064 0.0000 4 6 1.8740 2.5158 0.0005 5 8 0.6890 2.7892 0.0006 6 7 2.7930 3.5016 -0.0001 7 6 2.3646 4.9025 0.0010 8 1 1.4539 5.0035 0.5915 9 6 3.4662 5.7723 0.6098 10 6 4.7444 5.6306 -0.2189 11 6 4.4736 6.0821 -1.6555 12 1 4.1547 7.1245 -1.6547 13 6 5.7519 5.9410 -2.4841 14 8 5.5321 6.4706 -3.7930 15 6 3.3719 5.2123 -2.2643 16 6 2.0936 5.3541 -1.4355 17 6 3.6850 0.5991 -0.0006 18 6 3.5859 -0.7390 -0.0004 19 6 4.7460 -1.7010 -0.0014 20 8 5.5414 -1.4867 -1.1690 21 14 4.1027 -3.4494 0.0003 22 8 2.2889 -1.0839 -0.0061 23 1 -0.3633 -0.0001 -1.0276 24 1 -0.3633 -0.8900 0.5138 25 1 -0.3633 0.8901 0.5138 26 1 3.7382 3.2834 -0.0005 27 1 3.1472 6.8145 0.6110 28 1 3.6593 5.4506 1.6332 29 1 5.5295 6.2499 0.2150 30 1 5.0633 4.5882 -0.2197 31 1 6.5604 6.4899 -2.0011 32 1 6.0219 4.8876 -2.5590 33 1 6.3024 6.4138 -4.3748 34 1 3.1786 5.5343 -3.2876 35 1 3.6907 4.1700 -2.2651 36 1 1.3087 4.7347 -1.8696 37 1 1.7749 6.3964 -1.4348 38 1 4.5929 1.1840 -0.0004 39 1 5.3545 -1.5373 0.8880 40 1 5.0634 -1.6153 -1.9996 41 1 3.2451 -3.6762 -1.1907 42 1 5.2370 -4.4079 -0.0013 There are 55 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 55 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_7207534_13308374.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 02:33:19 Heat of formation + Delta-G solvation = -115.326932 kcal Electronic energy + Delta-G solvation = -24857.322442 eV Core-core repulsion = 21190.990816 eV Total energy + Delta-G solvation = -3666.331625 eV No. of doubly occupied orbitals = 55 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 296.150 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -43.77910 -41.22392 -39.42403 -38.16974 -37.47546 -34.90198 -34.11265 -33.13063 -31.84445 -31.48865 -29.35389 -26.64019 -25.74148 -24.33808 -23.68121 -22.59787 -21.98380 -20.84353 -20.16484 -19.05318 -18.22772 -18.03823 -17.73039 -16.97674 -16.85393 -16.44169 -16.07689 -15.98248 -15.76146 -15.55322 -14.95469 -14.89178 -14.67046 -14.20694 -14.19401 -13.98418 -13.89855 -13.84235 -13.47102 -13.20728 -13.03381 -12.93363 -12.83378 -12.45123 -12.18890 -12.15891 -11.58329 -11.33379 -11.16974 -11.11390 -10.96113 -10.83087 -10.74021 -10.10220 -9.58477 -4.94686 0.22605 0.81526 1.17369 1.41557 1.69596 1.90786 2.17432 2.25996 3.15773 3.28781 3.37711 3.62393 3.70240 3.75529 3.76524 3.90670 4.04232 4.11293 4.26664 4.37983 4.39172 4.41374 4.45378 4.48069 4.49210 4.57648 4.64092 4.65045 4.71175 4.74131 4.79505 4.99555 5.04886 5.08170 5.12914 5.13709 5.20241 5.22707 5.37951 5.42088 5.52804 5.87907 6.32057 6.49644 6.87351 7.17453 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.085 4.085 2 C 0.084 3.916 3 C -0.269 4.269 4 C 0.587 3.413 5 O -0.575 6.575 6 N -0.703 5.703 7 C 0.148 3.852 8 H 0.074 0.926 9 C -0.120 4.120 10 C -0.110 4.110 11 C -0.086 4.086 12 H 0.071 0.929 13 C 0.076 3.924 14 O -0.597 6.597 15 C -0.101 4.101 16 C -0.128 4.128 17 C -0.147 4.147 18 C -0.057 4.057 19 C -0.031 4.031 20 O -0.533 6.533 21 Si 0.769 3.231 22 O -0.172 6.172 23 H 0.094 0.906 24 H 0.101 0.899 25 H 0.097 0.903 26 H 0.409 0.591 27 H 0.088 0.912 28 H 0.082 0.918 29 H 0.084 0.916 30 H 0.070 0.930 31 H 0.058 0.942 32 H 0.051 0.949 33 H 0.395 0.605 34 H 0.051 0.949 35 H 0.057 0.943 36 H 0.044 0.956 37 H 0.077 0.923 38 H 0.176 0.824 39 H 0.159 0.841 40 H 0.390 0.610 41 H -0.296 1.296 42 H -0.281 1.281 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.187 -0.642 2.802 5.079 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C 0.031 3.969 3 C -0.274 4.274 4 C 0.376 3.624 5 O -0.456 6.456 6 N -0.355 5.355 7 C 0.044 3.956 8 H 0.092 0.908 9 C -0.157 4.157 10 C -0.147 4.147 11 C -0.105 4.105 12 H 0.089 0.911 13 C -0.002 4.002 14 O -0.405 6.405 15 C -0.138 4.138 16 C -0.166 4.166 17 C -0.167 4.167 18 C -0.105 4.105 19 C -0.141 4.141 20 O -0.341 6.341 21 Si 0.673 3.327 22 O -0.069 6.069 23 H 0.112 0.888 24 H 0.120 0.880 25 H 0.116 0.884 26 H 0.246 0.754 27 H 0.106 0.894 28 H 0.101 0.899 29 H 0.103 0.897 30 H 0.089 0.911 31 H 0.076 0.924 32 H 0.069 0.931 33 H 0.244 0.756 34 H 0.069 0.931 35 H 0.075 0.925 36 H 0.063 0.937 37 H 0.096 0.904 38 H 0.193 0.807 39 H 0.176 0.824 40 H 0.240 0.760 41 H -0.223 1.223 42 H -0.208 1.208 Dipole moment (debyes) X Y Z Total from point charges 3.133 -1.245 3.073 4.562 hybrid contribution 0.987 0.465 -1.652 1.979 sum 4.120 -0.780 1.422 4.427 Atomic orbital electron populations 1.20700 0.82672 1.05730 1.04967 1.23212 0.94751 0.83015 0.95944 1.21255 0.94290 0.93555 1.18258 1.17391 0.85293 0.84452 0.75221 1.90749 1.17960 1.84545 1.52389 1.45813 1.09840 1.05547 1.74311 1.20963 0.98598 0.79846 0.96234 0.90765 1.21782 0.93944 1.00442 0.99568 1.21506 0.97877 1.02265 0.93088 1.21168 0.94346 1.00295 0.94688 0.91098 1.22319 0.97073 0.97704 0.83067 1.86441 1.43478 1.85339 1.25269 1.21378 0.94490 0.99453 0.98502 1.21881 0.97648 1.01662 0.95427 1.22762 0.96309 0.93651 1.03937 1.22847 0.82863 0.95921 1.08892 1.24487 0.90082 1.06899 0.92609 1.86634 1.39360 1.91702 1.16409 0.93528 0.78804 0.72298 0.88072 1.83674 1.16809 1.34981 1.71445 0.88786 0.87987 0.88415 0.75359 0.89380 0.89917 0.89710 0.91110 0.92371 0.93062 0.75593 0.93058 0.92475 0.93707 0.90448 0.80657 0.82386 0.76038 1.22330 1.20772 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.09 9.89 71.24 0.70 0.62 16 2 C 0.08 0.34 7.37 25.26 0.19 0.53 16 3 C -0.27 -1.21 6.31 -18.99 -0.12 -1.33 16 4 C 0.59 4.02 7.78 86.65 0.67 4.69 16 5 O -0.57 -7.58 14.51 -4.06 -0.06 -7.64 16 6 N -0.70 -0.64 4.23 -445.83 -1.89 -2.52 16 7 C 0.15 0.12 2.78 44.99 0.13 0.24 16 8 H 0.07 0.34 7.58 -2.39 -0.02 0.32 16 9 C -0.12 0.54 5.61 30.59 0.17 0.71 16 10 C -0.11 0.65 5.03 30.59 0.15 0.80 16 11 C -0.09 0.15 2.43 -10.79 -0.03 0.13 16 12 H 0.07 0.03 8.14 -2.38 -0.02 0.01 16 13 C 0.08 -0.18 6.43 71.98 0.46 0.28 16 14 O -0.60 -0.80 13.20 -148.98 -1.97 -2.76 16 15 C -0.10 -0.17 4.94 30.60 0.15 -0.02 16 16 C -0.13 -0.36 5.60 30.60 0.17 -0.19 16 17 C -0.15 -0.01 10.46 23.65 0.25 0.24 16 18 C -0.06 0.01 6.20 24.76 0.15 0.16 16 19 C -0.03 0.11 2.97 71.24 0.21 0.32 16 20 O -0.53 0.76 12.86 -148.98 -1.92 -1.15 16 21 Si 0.77 -1.99 32.09 68.60 2.20 0.21 16 22 O -0.17 -0.41 8.89 4.53 0.04 -0.37 16 23 H 0.09 0.01 8.14 -2.39 -0.02 -0.01 16 24 H 0.10 -0.35 8.14 -2.39 -0.02 -0.37 16 25 H 0.10 0.41 6.48 -2.38 -0.02 0.40 16 26 H 0.41 -1.48 6.04 -92.71 -0.56 -2.04 16 27 H 0.09 -0.45 8.14 -2.39 -0.02 -0.47 16 28 H 0.08 -0.47 8.14 -2.39 -0.02 -0.49 16 29 H 0.08 -0.66 8.14 -2.39 -0.02 -0.68 16 30 H 0.07 -0.54 6.51 -2.38 -0.02 -0.55 16 31 H 0.06 -0.28 8.14 -2.39 -0.02 -0.30 16 32 H 0.05 -0.20 8.14 -2.39 -0.02 -0.22 16 33 H 0.39 -2.66 9.12 -74.05 -0.68 -3.34 16 34 H 0.05 0.29 7.82 -2.38 -0.02 0.27 16 35 H 0.06 0.11 7.60 -2.39 -0.02 0.09 16 36 H 0.04 0.35 8.14 -2.39 -0.02 0.33 16 37 H 0.08 0.14 8.14 -2.39 -0.02 0.12 16 38 H 0.18 -0.83 7.74 -2.91 -0.02 -0.85 16 39 H 0.16 -1.21 7.96 -2.39 -0.02 -1.23 16 40 H 0.39 -2.29 8.70 -74.06 -0.64 -2.94 16 41 H -0.30 -1.22 7.11 99.48 0.71 -0.51 16 42 H -0.28 -0.81 7.11 99.48 0.71 -0.10 16 Total: 0.00 -18.51 340.77 -1.10 -19.62 By element: Atomic # 1 Polarization: -11.77 SS G_CDS: -0.79 Total: -12.56 kcal Atomic # 6 Polarization: 3.92 SS G_CDS: 3.27 Total: 7.18 kcal Atomic # 7 Polarization: -0.64 SS G_CDS: -1.89 Total: -2.52 kcal Atomic # 8 Polarization: -8.03 SS G_CDS: -3.90 Total: -11.93 kcal Atomic # 14 Polarization: -1.99 SS G_CDS: 2.20 Total: 0.21 kcal Total: -18.51 -1.10 -19.62 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_7207534_13308374.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -95.710 kcal (2) G-P(sol) polarization free energy of solvation -18.512 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -114.222 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.105 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -19.617 kcal (6) G-S(sol) free energy of system = (1) + (5) -115.327 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds