Wall clock time and date at job start Mon Mar 8 2021 02:33:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42902 * 1 3 3 Si 1.86301 * 109.46857 * 2 1 4 4 C 1.50703 * 109.46822 * 240.00170 * 2 1 3 5 5 C 1.33749 * 125.12017 * 300.02312 * 4 2 1 6 6 C 1.37799 * 115.07916 * 179.73028 * 5 4 2 7 7 C 1.34980 * 114.70067 * 0.50144 * 6 5 4 8 8 C 1.47557 * 125.27562 * 179.79484 * 7 6 5 9 9 C 1.39822 * 120.00160 * 179.72124 * 8 7 6 10 10 C 1.36565 * 120.00394 * 179.97438 * 9 8 7 11 11 C 1.39834 * 119.99475 * 0.02562 * 10 9 8 12 12 C 1.47556 * 119.99870 * 180.02562 * 11 10 9 13 13 O 1.21603 * 120.00139 * 359.97438 * 12 11 10 14 14 N 1.34777 * 120.00195 * 180.02562 * 12 11 10 15 15 C 1.46506 * 119.99949 * 180.02562 * 14 12 11 16 16 H 1.09000 * 109.47020 * 324.99485 * 15 14 12 17 17 C 1.52999 * 109.47075 * 84.99839 * 15 14 12 18 18 C 1.52997 * 109.47317 * 59.99940 * 17 15 14 19 19 C 1.53000 * 109.47060 * 59.99960 * 18 17 15 20 20 H 1.08992 * 109.47399 * 59.99823 * 19 18 17 21 21 C 1.53001 * 109.46886 * 180.02562 * 19 18 17 22 22 O 1.42897 * 109.47209 * 185.00085 * 21 19 18 23 23 C 1.53002 * 109.47233 * 299.99657 * 19 18 17 24 24 C 1.52997 * 109.46817 * 60.00194 * 23 19 18 25 25 C 1.39824 * 120.00061 * 0.27884 * 11 10 9 26 26 C 1.36566 * 120.00020 * 359.39524 * 25 11 10 27 27 S 1.75859 * 125.11718 * 120.02185 * 4 2 1 28 28 H 0.96694 * 114.00422 * 59.99932 * 1 2 3 29 29 H 1.09004 * 109.47201 * 120.00474 * 2 1 3 30 30 H 1.48496 * 109.99954 * 60.00785 * 3 2 1 31 31 H 1.48507 * 109.99432 * 181.32341 * 3 2 1 32 32 H 1.07998 * 122.45412 * 359.97438 * 5 4 2 33 33 H 1.07997 * 122.64702 * 180.29640 * 6 5 4 34 34 H 1.07999 * 119.99516 * 359.97438 * 9 8 7 35 35 H 1.07992 * 120.00252 * 180.02562 * 10 9 8 36 36 H 0.97000 * 120.00195 * 359.97438 * 14 12 11 37 37 H 1.08996 * 109.46929 * 299.99044 * 17 15 14 38 38 H 1.09002 * 109.46716 * 179.97438 * 17 15 14 39 39 H 1.09002 * 109.47153 * 299.99641 * 18 17 15 40 40 H 1.09001 * 109.46832 * 179.97438 * 18 17 15 41 41 H 1.09008 * 109.46864 * 304.99696 * 21 19 18 42 42 H 1.09000 * 109.47679 * 64.99728 * 21 19 18 43 43 H 0.96701 * 114.00545 * 179.97438 * 22 21 19 44 44 H 1.08993 * 109.47662 * 180.02562 * 23 19 18 45 45 H 1.09002 * 109.47075 * 300.00932 * 23 19 18 46 46 H 1.09002 * 109.47153 * 60.00231 * 24 23 19 47 47 H 1.09001 * 109.47289 * 180.02562 * 24 23 19 48 48 H 1.08004 * 120.00522 * 179.72347 * 25 11 10 49 49 H 1.07997 * 120.00574 * 180.32050 * 26 25 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4290 0.0000 0.0000 3 14 2.0499 1.7565 0.0000 4 6 1.9313 -0.7104 -1.2305 5 6 1.6716 -1.9846 -1.5432 6 6 2.2324 -2.4224 -2.7234 7 6 2.9671 -1.4971 -3.3761 8 6 3.6724 -1.7152 -4.6537 9 6 4.3997 -0.6735 -5.2375 10 6 5.0529 -0.8755 -6.4197 11 6 4.9940 -2.1241 -7.0465 12 6 5.7003 -2.3426 -8.3235 13 8 6.3331 -1.4368 -8.8310 14 7 5.6431 -3.5459 -8.9279 15 6 6.3448 -3.7630 -10.1955 16 1 6.3122 -2.8498 -10.7898 17 6 7.8015 -4.1370 -9.9145 18 6 7.8472 -5.4187 -9.0803 19 6 7.1690 -6.5532 -9.8509 20 1 7.6910 -6.7147 -10.7940 21 6 7.2142 -7.8348 -9.0164 22 8 6.6861 -8.9201 -9.7813 23 6 5.7122 -6.1793 -10.1318 24 6 5.6665 -4.8976 -10.9660 25 6 4.2615 -3.1640 -6.4658 26 6 3.6138 -2.9639 -5.2803 27 16 2.9470 0.0113 -2.4715 28 1 -0.3934 0.4417 -0.7650 29 1 1.7924 -0.5139 0.8900 30 1 1.5616 2.4678 1.2086 31 1 3.5346 1.7702 -0.0322 32 1 1.0637 -2.6223 -0.9186 33 1 2.0976 -3.4274 -3.0949 34 1 4.4448 0.2909 -4.7536 35 1 5.6149 -0.0710 -6.8704 36 1 5.1380 -4.2684 -8.5233 37 1 8.2847 -3.3287 -9.3657 38 1 8.3234 -4.2989 -10.8576 39 1 7.3252 -5.2572 -8.1371 40 1 8.8851 -5.6853 -8.8805 41 1 8.2461 -8.0527 -8.7408 42 1 6.6174 -7.7020 -8.1139 43 1 6.6842 -9.7666 -9.3137 44 1 5.2288 -6.9876 -10.6804 45 1 5.1902 -6.0177 -9.1887 46 1 6.1885 -5.0591 -11.9092 47 1 4.6287 -4.6309 -11.1658 48 1 4.2123 -4.1271 -6.9521 49 1 3.0522 -3.7686 -4.8291 There are 66 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 66 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_7207534_13308390.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 02:33:22 Heat of formation + Delta-G solvation = -65.608982 kcal Electronic energy + Delta-G solvation = -30678.520858 eV Core-core repulsion = 26469.973663 eV Total energy + Delta-G solvation = -4208.547195 eV No. of doubly occupied orbitals = 66 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 374.138 amu Computer time = 1.47 seconds Orbital eigenvalues (eV) -41.66945 -40.38907 -39.45811 -38.89825 -37.46966 -37.32882 -34.95710 -33.55599 -32.39209 -31.81819 -31.45479 -30.27694 -27.33672 -26.30069 -24.75288 -23.99147 -23.66448 -23.44581 -22.23303 -21.86530 -20.24884 -20.20506 -19.32196 -18.65616 -18.18425 -17.62482 -17.05652 -16.73343 -16.53474 -16.27472 -16.21558 -16.04869 -15.97968 -15.55927 -15.54674 -15.04075 -14.90651 -14.83179 -14.50453 -14.40344 -14.30798 -13.97423 -13.88933 -13.60919 -13.36295 -13.26519 -13.19209 -13.08604 -13.04666 -12.59064 -12.53417 -12.29180 -12.14358 -12.06660 -11.57458 -11.51286 -11.31572 -11.13876 -11.08609 -10.81908 -10.79711 -10.53601 -10.19325 -10.11560 -9.55210 -9.03021 -5.16374 -0.88841 0.25634 0.33541 0.38354 0.76351 1.21795 1.52555 1.59410 1.84635 1.97444 2.08303 2.83221 3.30365 3.39471 3.44894 3.62372 3.67762 3.71306 3.74805 3.76653 3.84251 3.90354 4.09894 4.19575 4.25070 4.31287 4.36820 4.38867 4.42343 4.46692 4.48411 4.51179 4.56017 4.62525 4.66815 4.72590 4.77924 4.91817 4.99818 5.00553 5.05178 5.09320 5.11233 5.14731 5.22607 5.23459 5.29006 5.32083 5.41564 5.42558 5.48255 5.50473 5.73172 6.46229 6.66323 6.90905 7.13794 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.547 6.547 2 C -0.024 4.024 3 Si 0.716 3.284 4 C -0.221 4.221 5 C -0.110 4.110 6 C -0.116 4.116 7 C -0.159 4.159 8 C 0.007 3.993 9 C -0.128 4.128 10 C -0.064 4.064 11 C -0.150 4.150 12 C 0.556 3.444 13 O -0.580 6.580 14 N -0.703 5.703 15 C 0.146 3.854 16 H 0.071 0.929 17 C -0.127 4.127 18 C -0.105 4.105 19 C -0.087 4.087 20 H 0.068 0.932 21 C 0.077 3.923 22 O -0.594 6.594 23 C -0.106 4.106 24 C -0.122 4.122 25 C -0.069 4.069 26 C -0.108 4.108 27 S 0.122 5.878 28 H 0.397 0.603 29 H 0.123 0.877 30 H -0.269 1.269 31 H -0.268 1.268 32 H 0.154 0.846 33 H 0.167 0.833 34 H 0.134 0.866 35 H 0.129 0.871 36 H 0.411 0.589 37 H 0.049 0.951 38 H 0.079 0.921 39 H 0.068 0.932 40 H 0.066 0.934 41 H 0.048 0.952 42 H 0.058 0.942 43 H 0.395 0.605 44 H 0.068 0.932 45 H 0.070 0.930 46 H 0.083 0.917 47 H 0.077 0.923 48 H 0.159 0.841 49 H 0.161 0.839 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.937 -4.889 0.858 5.768 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.355 6.355 2 C -0.138 4.138 3 Si 0.620 3.380 4 C -0.339 4.339 5 C -0.140 4.140 6 C -0.146 4.146 7 C -0.276 4.276 8 C 0.004 3.996 9 C -0.147 4.147 10 C -0.083 4.083 11 C -0.153 4.153 12 C 0.345 3.655 13 O -0.461 6.461 14 N -0.356 5.356 15 C 0.042 3.958 16 H 0.089 0.911 17 C -0.166 4.166 18 C -0.143 4.143 19 C -0.105 4.105 20 H 0.087 0.913 21 C 0.000 4.000 22 O -0.402 6.402 23 C -0.144 4.144 24 C -0.160 4.160 25 C -0.088 4.088 26 C -0.127 4.127 27 S 0.389 5.611 28 H 0.247 0.753 29 H 0.140 0.860 30 H -0.195 1.195 31 H -0.194 1.194 32 H 0.171 0.829 33 H 0.184 0.816 34 H 0.152 0.848 35 H 0.147 0.853 36 H 0.250 0.750 37 H 0.068 0.932 38 H 0.097 0.903 39 H 0.086 0.914 40 H 0.085 0.915 41 H 0.066 0.934 42 H 0.076 0.924 43 H 0.245 0.755 44 H 0.087 0.913 45 H 0.089 0.911 46 H 0.101 0.899 47 H 0.096 0.904 48 H 0.176 0.824 49 H 0.178 0.822 Dipole moment (debyes) X Y Z Total from point charges -1.367 -2.046 0.824 2.595 hybrid contribution -0.320 -2.252 0.960 2.469 sum -1.688 -4.298 1.783 4.950 Atomic orbital electron populations 1.86490 1.16518 1.82050 1.50414 1.24398 0.85296 1.08998 0.95093 0.94182 0.79517 0.76443 0.87858 1.25164 1.07027 0.99346 1.02331 1.20186 1.01282 0.94889 0.97664 1.20632 0.97660 1.01397 0.94949 1.23159 1.06526 0.98239 0.99677 1.18451 0.95145 0.94598 0.91363 1.21033 0.98268 0.99329 0.96021 1.20940 0.96655 0.96506 0.94173 1.20041 1.02921 0.96232 0.96122 1.18484 0.79862 0.82510 0.84627 1.90781 1.44579 1.44008 1.66768 1.45936 1.52694 1.12789 1.24175 1.20966 0.91699 0.98841 0.84327 0.91098 1.21854 0.96023 0.97495 1.01214 1.21417 1.00951 0.93327 0.98574 1.21148 0.97061 0.93065 0.99263 0.91339 1.22271 0.97626 0.86541 0.93606 1.86426 1.86536 1.21128 1.46117 1.21486 0.95773 0.96791 1.00343 1.21809 1.01562 0.93541 0.99044 1.21219 0.94012 0.98559 0.94962 1.21186 0.99945 0.96432 0.95165 1.84199 1.49136 1.13106 1.14667 0.75318 0.86000 1.19454 1.19390 0.82863 0.81606 0.84816 0.85349 0.75005 0.93168 0.90287 0.91357 0.91493 0.93402 0.92410 0.75526 0.91291 0.91126 0.89863 0.90436 0.82402 0.82191 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.55 0.72 12.86 -148.98 -1.92 -1.19 16 2 C -0.02 0.04 2.96 71.24 0.21 0.25 16 3 Si 0.72 -1.06 30.96 68.60 2.12 1.06 16 4 C -0.22 0.21 5.73 24.67 0.14 0.35 16 5 C -0.11 0.18 10.00 21.15 0.21 0.39 16 6 C -0.12 0.30 9.64 21.42 0.21 0.51 16 7 C -0.16 0.05 6.37 23.98 0.15 0.20 16 8 C 0.01 0.00 5.88 -20.05 -0.12 -0.12 16 9 C -0.13 -0.23 9.54 22.26 0.21 -0.02 16 10 C -0.06 -0.26 9.53 22.26 0.21 -0.05 16 11 C -0.15 -0.36 5.88 -20.05 -0.12 -0.47 16 12 C 0.56 3.13 7.73 86.70 0.67 3.80 16 13 O -0.58 -8.32 15.99 -4.04 -0.06 -8.39 16 14 N -0.70 0.64 4.18 -445.65 -1.86 -1.23 16 15 C 0.15 0.01 2.78 44.99 0.13 0.13 16 16 H 0.07 0.33 7.58 -2.39 -0.02 0.31 16 17 C -0.13 -0.04 5.60 30.59 0.17 0.13 16 18 C -0.11 0.30 5.05 30.59 0.15 0.46 16 19 C -0.09 0.27 2.43 -10.79 -0.03 0.24 16 20 H 0.07 -0.03 8.14 -2.39 -0.02 -0.05 16 21 C 0.08 -0.31 6.43 71.98 0.46 0.16 16 22 O -0.59 0.83 13.19 -148.98 -1.97 -1.13 16 23 C -0.11 0.47 4.93 30.59 0.15 0.62 16 24 C -0.12 0.44 5.61 30.60 0.17 0.62 16 25 C -0.07 0.27 9.48 22.26 0.21 0.48 16 26 C -0.11 0.43 9.48 22.26 0.21 0.64 16 27 S 0.12 -0.05 19.46 -56.49 -1.10 -1.15 16 28 H 0.40 -3.50 8.70 -74.06 -0.64 -4.15 16 29 H 0.12 -0.16 7.96 -2.39 -0.02 -0.18 16 30 H -0.27 -1.20 7.11 99.48 0.71 -0.50 16 31 H -0.27 -0.93 7.11 99.48 0.71 -0.22 16 32 H 0.15 -0.52 8.06 -2.91 -0.02 -0.54 16 33 H 0.17 -1.26 6.88 -2.91 -0.02 -1.28 16 34 H 0.13 0.00 7.26 -2.91 -0.02 -0.02 16 35 H 0.13 0.74 7.63 -2.91 -0.02 0.72 16 36 H 0.41 -2.70 4.88 -92.71 -0.45 -3.15 16 37 H 0.05 0.25 8.14 -2.39 -0.02 0.23 16 38 H 0.08 -0.05 8.14 -2.39 -0.02 -0.07 16 39 H 0.07 -0.25 7.60 -2.39 -0.02 -0.27 16 40 H 0.07 -0.18 8.14 -2.39 -0.02 -0.20 16 41 H 0.05 -0.22 8.14 -2.38 -0.02 -0.24 16 42 H 0.06 -0.38 8.14 -2.39 -0.02 -0.40 16 43 H 0.40 -3.63 9.12 -74.06 -0.68 -4.31 16 44 H 0.07 -0.13 7.82 -2.39 -0.02 -0.15 16 45 H 0.07 -0.52 6.50 -2.39 -0.02 -0.54 16 46 H 0.08 -0.29 8.14 -2.39 -0.02 -0.31 16 47 H 0.08 -0.33 8.14 -2.39 -0.02 -0.35 16 48 H 0.16 -1.69 6.38 -2.91 -0.02 -1.71 16 49 H 0.16 -1.53 6.74 -2.91 -0.02 -1.55 16 Total: 0.00 -20.53 404.15 -2.10 -22.63 By element: Atomic # 1 Polarization: -18.19 SS G_CDS: -0.73 Total: -18.92 kcal Atomic # 6 Polarization: 4.90 SS G_CDS: 3.41 Total: 8.31 kcal Atomic # 7 Polarization: 0.64 SS G_CDS: -1.86 Total: -1.23 kcal Atomic # 8 Polarization: -6.77 SS G_CDS: -3.95 Total: -10.72 kcal Atomic # 14 Polarization: -1.06 SS G_CDS: 2.12 Total: 1.06 kcal Atomic # 16 Polarization: -0.05 SS G_CDS: -1.10 Total: -1.15 kcal Total: -20.53 -2.10 -22.63 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_7207534_13308390.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -42.979 kcal (2) G-P(sol) polarization free energy of solvation -20.531 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.510 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.099 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -22.630 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.609 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.47 seconds