Wall clock time and date at job start Mon Mar 8 2021 02:33:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46895 * 1 3 3 C 1.46905 * 110.99931 * 2 1 4 4 C 1.39045 * 111.00253 * 123.95833 * 2 1 3 5 5 C 1.39200 * 119.93678 * 120.00070 * 4 2 1 6 6 C 1.50698 * 119.95995 * 359.97438 * 5 4 2 7 7 O 1.42905 * 109.47321 * 75.00311 * 6 5 4 8 8 Si 1.86299 * 109.46871 * 195.00011 * 6 5 4 9 9 C 1.37622 * 120.07055 * 180.25466 * 5 4 2 10 10 C 1.39771 * 119.93074 * 359.51135 * 9 5 4 11 11 C 1.47525 * 120.06976 * 180.21301 * 10 9 5 12 12 O 1.21597 * 120.00031 * 0.29534 * 11 10 9 13 13 N 1.34784 * 119.99917 * 180.29916 * 11 10 9 14 14 C 1.46504 * 119.99573 * 179.97438 * 13 11 10 15 15 H 1.08996 * 109.47110 * 324.99705 * 14 13 11 16 16 C 1.52997 * 109.46854 * 84.99771 * 14 13 11 17 17 C 1.53003 * 109.47302 * 60.00018 * 16 14 13 18 18 C 1.53000 * 109.47283 * 59.99428 * 17 16 14 19 19 H 1.09001 * 109.46801 * 59.99957 * 18 17 16 20 20 C 1.52995 * 109.47157 * 179.97438 * 18 17 16 21 21 O 1.42899 * 109.47551 * 295.00587 * 20 18 17 22 22 C 1.53003 * 109.47130 * 300.00403 * 18 17 16 23 23 C 1.53000 * 109.47180 * 59.99961 * 22 18 17 24 24 C 1.39818 * 119.86163 * 0.50860 * 10 9 5 25 25 C 1.37579 * 119.93217 * 359.72469 * 24 10 9 26 26 H 1.09001 * 109.46891 * 296.04291 * 1 2 3 27 27 H 1.08998 * 109.47575 * 56.04668 * 1 2 3 28 28 H 1.08999 * 109.47029 * 176.04650 * 1 2 3 29 29 H 1.09002 * 109.47138 * 183.95486 * 3 2 1 30 30 H 1.08999 * 109.46866 * 303.95212 * 3 2 1 31 31 H 1.08996 * 109.47180 * 63.95459 * 3 2 1 32 32 H 1.09001 * 109.47612 * 315.00579 * 6 5 4 33 33 H 0.96696 * 114.00036 * 299.99741 * 7 6 5 34 34 H 1.48504 * 109.99999 * 60.00368 * 8 6 5 35 35 H 1.48504 * 110.00212 * 181.32086 * 8 6 5 36 36 H 1.08003 * 120.03486 * 179.72338 * 9 5 4 37 37 H 0.96996 * 119.99900 * 359.97438 * 13 11 10 38 38 H 1.09003 * 109.46798 * 179.97438 * 16 14 13 39 39 H 1.08997 * 109.47560 * 299.99564 * 16 14 13 40 40 H 1.09003 * 109.46555 * 299.99367 * 17 16 14 41 41 H 1.08992 * 109.47124 * 179.97438 * 17 16 14 42 42 H 1.09004 * 109.46834 * 55.00440 * 20 18 17 43 43 H 1.08999 * 109.47190 * 175.00004 * 20 18 17 44 44 H 0.96696 * 114.00093 * 179.97438 * 21 20 18 45 45 H 1.09001 * 109.46914 * 299.99485 * 22 18 17 46 46 H 1.09003 * 109.46844 * 179.97438 * 22 18 17 47 47 H 1.08998 * 109.47028 * 180.02562 * 23 22 18 48 48 H 1.08996 * 109.47246 * 60.00242 * 23 22 18 49 49 H 1.08001 * 120.03418 * 179.74417 * 24 10 9 50 50 H 1.08001 * 119.96743 * 180.02562 * 25 24 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3715 0.0000 4 6 1.9673 -0.7251 1.0767 5 6 2.7794 -1.8331 0.8518 6 6 3.1166 -2.2452 -0.5580 7 8 4.0855 -1.3447 -1.0988 8 14 3.8116 -3.9737 -0.5502 9 6 3.2698 -2.5558 1.9153 10 6 2.9602 -2.1703 3.2226 11 6 3.4881 -2.9401 4.3649 12 8 4.1979 -3.9079 4.1699 13 7 3.1837 -2.5706 5.6249 14 6 3.7076 -3.3354 6.7593 15 1 3.7541 -4.3918 6.4948 16 6 5.1106 -2.8345 7.1076 17 6 5.0452 -1.3516 7.4789 18 6 4.1238 -1.1684 8.6865 19 1 4.5135 -1.7375 9.5305 20 6 4.0589 0.3143 9.0582 21 8 5.3468 0.7527 9.4953 22 6 2.7207 -1.6693 8.3381 23 6 2.7861 -3.1522 7.9669 24 6 2.1439 -1.0572 3.4452 25 6 1.6527 -0.3416 2.3778 26 1 -0.3633 0.4512 0.9233 27 1 -0.3634 0.5739 -0.8524 28 1 -0.3633 -1.0252 -0.0709 29 1 3.0827 1.3433 -0.0709 30 1 1.5898 1.9163 -0.8525 31 1 1.7044 1.8724 0.9233 32 1 2.2149 -2.2189 -1.1699 33 1 3.7909 -0.4244 -1.1334 34 1 2.8134 -4.9200 0.0099 35 1 4.1778 -4.3802 -1.9307 36 1 3.8962 -3.4181 1.7400 37 1 2.6177 -1.7983 5.7805 38 1 5.5002 -3.4033 7.9519 39 1 5.7671 -2.9650 6.2473 40 1 4.6555 -0.7827 6.6348 41 1 6.0447 -0.9949 7.7275 42 1 3.7541 0.8942 8.1870 43 1 3.3350 0.4564 9.8606 44 1 5.3801 1.6856 9.7473 45 1 2.3309 -1.1003 7.4941 46 1 2.0644 -1.5392 9.1986 47 1 1.7866 -3.5089 7.7182 48 1 3.1758 -3.7212 8.8109 49 1 1.8994 -0.7592 4.4541 50 1 1.0225 0.5186 2.5491 There are 63 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 63 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_7207534_13422196.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 02:33:31 Heat of formation + Delta-G solvation = -86.593298 kcal Electronic energy + Delta-G solvation = -30239.955821 eV Core-core repulsion = 26233.287463 eV Total energy + Delta-G solvation = -4006.668358 eV No. of doubly occupied orbitals = 63 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 335.193 amu Computer time = 1.20 seconds Orbital eigenvalues (eV) -41.86392 -40.96468 -39.49109 -37.72792 -37.51294 -37.24591 -34.90497 -32.96736 -31.91697 -31.75114 -30.79384 -28.59635 -26.93891 -26.73030 -25.77211 -23.73033 -23.44016 -22.97608 -22.12069 -21.38585 -20.18190 -19.26732 -18.24771 -18.02931 -17.82695 -17.33269 -16.61341 -16.56532 -16.43585 -15.97860 -15.93656 -15.77682 -15.37371 -15.19482 -15.06884 -15.01926 -14.68040 -14.55466 -14.20106 -13.97929 -13.88493 -13.58747 -13.42286 -13.19155 -13.09521 -13.01505 -12.99554 -12.73461 -12.63690 -12.41716 -12.21437 -12.12467 -11.55508 -11.41587 -11.31121 -11.28363 -11.09630 -11.01111 -10.79252 -10.18281 -10.10394 -9.79107 -9.63008 -4.93577 -0.41176 0.13632 1.31470 1.52609 1.67760 1.84347 2.06906 2.62541 2.71886 3.32257 3.48388 3.59537 3.68944 3.71448 3.75436 3.88628 3.92337 4.01447 4.06126 4.10896 4.17944 4.29298 4.34193 4.38957 4.41659 4.44633 4.45151 4.49693 4.52347 4.57099 4.64070 4.67567 4.71605 4.76690 4.77579 4.92866 4.96822 5.00006 5.03120 5.06377 5.11419 5.14355 5.16805 5.19639 5.24479 5.41627 5.43825 5.49385 5.54542 5.75604 6.18863 6.46250 6.62199 6.91528 7.14198 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 N -0.528 5.528 3 C 0.023 3.977 4 C 0.125 3.875 5 C -0.112 4.112 6 C -0.057 4.057 7 O -0.544 6.544 8 Si 0.770 3.230 9 C -0.060 4.060 10 C -0.146 4.146 11 C 0.556 3.444 12 O -0.574 6.574 13 N -0.702 5.702 14 C 0.146 3.854 15 H 0.073 0.927 16 C -0.129 4.129 17 C -0.101 4.101 18 C -0.088 4.088 19 H 0.068 0.932 20 C 0.076 3.924 21 O -0.598 6.598 22 C -0.110 4.110 23 C -0.120 4.120 24 C -0.060 4.060 25 C -0.151 4.151 26 H 0.046 0.954 27 H 0.087 0.913 28 H 0.062 0.938 29 H 0.072 0.928 30 H 0.088 0.912 31 H 0.043 0.957 32 H 0.081 0.919 33 H 0.373 0.627 34 H -0.274 1.274 35 H -0.286 1.286 36 H 0.136 0.864 37 H 0.411 0.589 38 H 0.075 0.925 39 H 0.046 0.954 40 H 0.062 0.938 41 H 0.051 0.949 42 H 0.055 0.945 43 H 0.057 0.943 44 H 0.395 0.605 45 H 0.075 0.925 46 H 0.084 0.916 47 H 0.083 0.917 48 H 0.086 0.914 49 H 0.159 0.841 50 H 0.153 0.847 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.184 7.497 4.407 10.671 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 N -0.250 5.250 3 C -0.123 4.123 4 C 0.031 3.969 5 C -0.114 4.114 6 C -0.167 4.167 7 O -0.351 6.351 8 Si 0.673 3.327 9 C -0.079 4.079 10 C -0.149 4.149 11 C 0.344 3.656 12 O -0.454 6.454 13 N -0.356 5.356 14 C 0.042 3.958 15 H 0.091 0.909 16 C -0.168 4.168 17 C -0.139 4.139 18 C -0.106 4.106 19 H 0.086 0.914 20 C -0.002 4.002 21 O -0.406 6.406 22 C -0.147 4.147 23 C -0.158 4.158 24 C -0.079 4.079 25 C -0.170 4.170 26 H 0.064 0.936 27 H 0.106 0.894 28 H 0.081 0.919 29 H 0.091 0.909 30 H 0.107 0.893 31 H 0.062 0.938 32 H 0.098 0.902 33 H 0.223 0.777 34 H -0.200 1.200 35 H -0.212 1.212 36 H 0.153 0.847 37 H 0.250 0.750 38 H 0.094 0.906 39 H 0.064 0.936 40 H 0.080 0.920 41 H 0.070 0.930 42 H 0.073 0.927 43 H 0.075 0.925 44 H 0.244 0.756 45 H 0.093 0.907 46 H 0.102 0.898 47 H 0.101 0.899 48 H 0.104 0.896 49 H 0.176 0.824 50 H 0.170 0.830 Dipole moment (debyes) X Y Z Total from point charges -5.149 4.639 3.393 7.717 hybrid contribution -1.563 2.106 0.305 2.640 sum -6.712 6.745 3.697 10.208 Atomic orbital electron populations 1.22524 0.84392 1.02772 1.02416 1.59443 1.09817 1.15396 1.40330 1.22594 1.01162 0.86090 1.02450 1.18957 0.94511 0.93456 0.89995 1.20183 0.99033 0.96312 0.95835 1.25131 0.96132 1.04700 0.90716 1.86700 1.41750 1.21786 1.84882 0.92250 0.87667 0.71372 0.81368 1.21067 0.96954 0.98474 0.91401 1.19912 1.03130 0.98951 0.92895 1.18392 0.79796 0.83550 0.83815 1.90791 1.39293 1.29397 1.85933 1.45908 1.52190 1.32994 1.04473 1.20978 0.93465 0.95656 0.85711 0.90932 1.21887 0.96552 0.97220 1.01095 1.21389 0.99691 0.95322 0.97455 1.21176 0.96431 0.95049 0.97951 0.91367 1.22325 0.84453 0.94860 0.98528 1.86447 1.32759 1.33039 1.88362 1.21514 0.95328 0.95261 1.02606 1.21791 0.99908 0.97608 0.96505 1.21423 0.93599 0.92173 1.00682 1.21814 1.01696 1.01455 0.92069 0.93569 0.89447 0.91918 0.90891 0.89322 0.93790 0.90186 0.77733 1.19994 1.21245 0.84688 0.75034 0.90631 0.93558 0.91961 0.93042 0.92679 0.92502 0.75600 0.90669 0.89755 0.89862 0.89574 0.82395 0.82980 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 -0.12 9.34 127.69 1.19 1.07 16 2 N -0.53 1.41 3.70 -745.10 -2.76 -1.35 16 3 C 0.02 -0.14 9.09 127.69 1.16 1.02 16 4 C 0.13 -0.04 4.66 38.47 0.18 0.14 16 5 C -0.11 -0.40 5.28 -19.78 -0.10 -0.50 16 6 C -0.06 -0.27 2.29 71.24 0.16 -0.11 16 7 O -0.54 -2.99 12.65 -148.98 -1.89 -4.88 16 8 Si 0.77 4.77 30.16 68.60 2.07 6.84 16 9 C -0.06 -0.32 8.19 22.49 0.18 -0.13 16 10 C -0.15 -0.39 5.88 -20.08 -0.12 -0.50 16 11 C 0.56 3.06 7.73 86.69 0.67 3.73 16 12 O -0.57 -7.98 16.00 -4.02 -0.06 -8.04 16 13 N -0.70 0.98 4.18 -445.69 -1.86 -0.88 16 14 C 0.15 -0.07 2.78 44.99 0.13 0.05 16 15 H 0.07 0.29 7.58 -2.39 -0.02 0.27 16 16 C -0.13 -0.21 5.60 30.59 0.17 -0.04 16 17 C -0.10 0.02 4.94 30.60 0.15 0.17 16 18 C -0.09 0.31 2.43 -10.79 -0.03 0.28 16 19 H 0.07 -0.05 8.14 -2.39 -0.02 -0.07 16 20 C 0.08 -0.33 6.43 71.98 0.46 0.13 16 21 O -0.60 0.12 13.19 -148.98 -1.97 -1.84 16 22 C -0.11 0.88 5.03 30.60 0.15 1.04 16 23 C -0.12 0.72 5.61 30.59 0.17 0.89 16 24 C -0.06 0.24 9.53 22.50 0.21 0.45 16 25 C -0.15 0.60 8.53 22.36 0.19 0.79 16 26 H 0.05 -0.32 7.10 -2.39 -0.02 -0.34 16 27 H 0.09 -0.58 8.12 -2.39 -0.02 -0.60 16 28 H 0.06 -0.18 8.14 -2.39 -0.02 -0.20 16 29 H 0.07 -0.41 7.41 -2.39 -0.02 -0.43 16 30 H 0.09 -0.69 8.12 -2.39 -0.02 -0.71 16 31 H 0.04 -0.33 7.32 -2.39 -0.02 -0.35 16 32 H 0.08 0.36 7.78 -2.39 -0.02 0.34 16 33 H 0.37 0.34 7.48 -74.06 -0.55 -0.22 16 34 H -0.27 -2.66 7.11 99.48 0.71 -1.95 16 35 H -0.29 -3.27 7.11 99.48 0.71 -2.56 16 36 H 0.14 0.88 4.69 -2.91 -0.01 0.87 16 37 H 0.41 -3.08 4.88 -92.71 -0.45 -3.53 16 38 H 0.08 0.08 8.14 -2.39 -0.02 0.06 16 39 H 0.05 0.32 8.14 -2.39 -0.02 0.30 16 40 H 0.06 -0.06 7.60 -2.39 -0.02 -0.08 16 41 H 0.05 0.21 7.82 -2.39 -0.02 0.19 16 42 H 0.05 -0.37 8.14 -2.38 -0.02 -0.39 16 43 H 0.06 -0.38 8.14 -2.39 -0.02 -0.40 16 44 H 0.39 -3.25 9.12 -74.06 -0.68 -3.93 16 45 H 0.07 -0.82 6.51 -2.39 -0.02 -0.83 16 46 H 0.08 -0.81 8.14 -2.39 -0.02 -0.83 16 47 H 0.08 -0.61 8.14 -2.39 -0.02 -0.63 16 48 H 0.09 -0.52 8.14 -2.39 -0.02 -0.54 16 49 H 0.16 -1.73 6.39 -2.91 -0.02 -1.75 16 50 H 0.15 -1.30 6.99 -2.91 -0.02 -1.32 16 Total: 0.00 -19.11 385.62 -2.20 -21.31 By element: Atomic # 1 Polarization: -18.95 SS G_CDS: -0.68 Total: -19.63 kcal Atomic # 6 Polarization: 3.53 SS G_CDS: 4.94 Total: 8.47 kcal Atomic # 7 Polarization: 2.39 SS G_CDS: -4.62 Total: -2.23 kcal Atomic # 8 Polarization: -10.85 SS G_CDS: -3.92 Total: -14.76 kcal Atomic # 14 Polarization: 4.77 SS G_CDS: 2.07 Total: 6.84 kcal Total: -19.11 -2.20 -21.31 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_7207534_13422196.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -65.282 kcal (2) G-P(sol) polarization free energy of solvation -19.110 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -84.392 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.201 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -21.311 kcal (6) G-S(sol) free energy of system = (1) + (5) -86.593 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.20 seconds