Wall clock time and date at job start Mon Mar 8 2021 02:33:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42896 * 1 3 3 Si 1.86301 * 109.46974 * 2 1 4 4 C 1.50701 * 109.47417 * 120.00123 * 2 1 3 5 5 C 1.34179 * 125.43716 * 64.71885 * 4 2 1 6 6 C 1.47019 * 105.95106 * 179.87156 * 5 4 2 7 7 C 1.47379 * 127.19054 * 180.17299 * 6 5 4 8 8 O 1.21620 * 120.00125 * 0.28457 * 7 6 5 9 9 N 1.34773 * 120.00209 * 180.28400 * 7 6 5 10 10 C 1.46498 * 120.00402 * 180.02562 * 9 7 6 11 11 H 1.09001 * 109.47074 * 34.99581 * 10 9 7 12 12 C 1.52999 * 109.47479 * 155.00003 * 10 9 7 13 13 C 1.52994 * 109.47428 * 59.99785 * 12 10 9 14 14 C 1.53005 * 109.47079 * 59.99781 * 13 12 10 15 15 H 1.09001 * 109.46686 * 60.00442 * 14 13 12 16 16 C 1.52994 * 109.47079 * 180.02562 * 14 13 12 17 17 O 1.42902 * 109.47123 * 185.00184 * 16 14 13 18 18 C 1.52999 * 109.47169 * 300.00377 * 14 13 12 19 19 C 1.52998 * 109.47274 * 60.00173 * 18 14 13 20 20 C 1.36413 * 105.61883 * 0.39053 * 6 5 4 21 21 O 1.33648 * 108.39650 * 359.76180 * 20 6 5 22 22 H 0.96708 * 114.00101 * 299.99304 * 1 2 3 23 23 H 1.09002 * 109.46984 * 240.00143 * 2 1 3 24 24 H 1.48494 * 109.99914 * 178.67998 * 3 2 1 25 25 H 1.48493 * 110.00101 * 300.00094 * 3 2 1 26 26 H 1.07996 * 127.02343 * 359.96075 * 5 4 2 27 27 H 0.97000 * 120.00079 * 359.97438 * 9 7 6 28 28 H 1.09001 * 109.46860 * 179.97438 * 12 10 9 29 29 H 1.09001 * 109.46534 * 299.99427 * 12 10 9 30 30 H 1.09001 * 109.47292 * 180.02562 * 13 12 10 31 31 H 1.09001 * 109.47001 * 300.00416 * 13 12 10 32 32 H 1.09001 * 109.47341 * 305.00378 * 16 14 13 33 33 H 1.09005 * 109.47081 * 65.00481 * 16 14 13 34 34 H 0.96699 * 114.00223 * 179.97438 * 17 16 14 35 35 H 1.08999 * 109.46557 * 179.97438 * 18 14 13 36 36 H 1.08991 * 109.46892 * 299.99761 * 18 14 13 37 37 H 1.09001 * 109.47138 * 179.97438 * 19 18 14 38 38 H 1.09001 * 109.47352 * 59.99463 * 19 18 14 39 39 H 1.07997 * 125.80578 * 179.74937 * 20 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4290 0.0000 0.0000 3 14 2.0499 1.7565 0.0000 4 6 1.9314 -0.7104 1.2304 5 6 1.7506 -2.0111 1.5061 6 6 2.4128 -2.2462 2.7975 7 6 2.5014 -3.5194 3.5345 8 8 1.9949 -4.5249 3.0744 9 7 3.1437 -3.5696 4.7183 10 6 3.2322 -4.8353 5.4506 11 1 3.3242 -5.6590 4.7427 12 6 4.4580 -4.8103 6.3660 13 6 4.3290 -3.6541 7.3596 14 6 3.0665 -3.8448 8.2028 15 1 3.1324 -4.7865 8.7477 16 6 2.9372 -2.6883 9.1961 17 8 1.8244 -2.9253 10.0608 18 6 1.8408 -3.8698 7.2875 19 6 1.9698 -5.0260 6.2938 20 6 2.9238 -1.0386 3.1735 21 8 2.6260 -0.1419 2.2282 22 1 -0.3934 0.4416 0.7652 23 1 1.7923 -0.5138 -0.8900 24 1 3.5345 1.7703 0.0321 25 1 1.5614 2.4679 -1.2084 26 1 1.2270 -2.7372 0.9021 27 1 3.5479 -2.7678 5.0851 28 1 4.5235 -5.7519 6.9111 29 1 5.3573 -4.6745 5.7652 30 1 5.2024 -3.6361 8.0115 31 1 4.2631 -2.7124 6.8148 32 1 3.8489 -2.6148 9.7890 33 1 2.7821 -1.7570 8.6512 34 1 1.6824 -2.2306 10.7184 35 1 0.9416 -4.0061 7.8882 36 1 1.7750 -2.9281 6.7427 37 1 1.0964 -5.0441 5.6420 38 1 2.0357 -5.9678 6.8387 39 1 3.4752 -0.8406 4.0807 There are 52 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 52 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_22_7207534_13456056.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 02:33:42 Heat of formation + Delta-G solvation = -108.819125 kcal Electronic energy + Delta-G solvation = -22584.656880 eV Core-core repulsion = 19074.145074 eV Total energy + Delta-G solvation = -3510.511807 eV No. of doubly occupied orbitals = 52 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 282.135 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -43.73051 -41.19856 -39.34454 -38.05281 -37.49653 -34.83980 -33.92778 -32.21913 -31.88272 -31.07417 -26.92855 -26.42393 -24.88495 -23.75582 -22.29135 -22.21772 -21.26923 -20.16496 -19.41911 -18.31999 -17.87456 -17.50720 -17.42727 -16.84058 -16.54870 -16.18543 -15.92963 -15.79328 -15.62078 -14.94408 -14.83271 -14.67956 -14.20758 -13.99898 -13.96136 -13.63097 -13.51571 -13.26105 -13.06239 -12.88503 -12.54428 -12.25883 -12.16078 -11.64792 -11.39917 -11.19258 -10.99352 -10.92042 -10.86454 -10.66486 -10.06345 -9.81731 -5.09402 0.22704 0.90094 1.09620 1.44375 1.74379 1.88658 2.10504 2.38572 3.10805 3.18543 3.37756 3.54944 3.59354 3.64005 3.81297 3.90486 3.95696 4.14474 4.23744 4.27692 4.33930 4.36394 4.37730 4.45405 4.52731 4.57537 4.59639 4.66088 4.77299 4.88947 4.95978 5.03250 5.04711 5.21308 5.23911 5.34933 5.36999 5.52321 5.81886 6.36101 6.47234 6.61767 7.24742 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.530 6.530 2 C -0.029 4.029 3 Si 0.706 3.294 4 C -0.058 4.058 5 C -0.123 4.123 6 C -0.236 4.236 7 C 0.587 3.413 8 O -0.531 6.531 9 N -0.720 5.720 10 C 0.147 3.853 11 H 0.091 0.909 12 C -0.127 4.127 13 C -0.114 4.114 14 C -0.089 4.089 15 H 0.080 0.920 16 C 0.079 3.921 17 O -0.572 6.572 18 C -0.107 4.107 19 C -0.132 4.132 20 C 0.029 3.971 21 O -0.166 6.166 22 H 0.384 0.616 23 H 0.134 0.866 24 H -0.254 1.254 25 H -0.247 1.247 26 H 0.162 0.838 27 H 0.395 0.605 28 H 0.083 0.917 29 H 0.073 0.927 30 H 0.071 0.929 31 H 0.060 0.940 32 H 0.045 0.955 33 H 0.044 0.956 34 H 0.380 0.620 35 H 0.071 0.929 36 H 0.058 0.942 37 H 0.070 0.930 38 H 0.074 0.926 39 H 0.212 0.788 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.876 5.088 4.636 7.460 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.335 6.335 2 C -0.139 4.139 3 Si 0.606 3.394 4 C -0.107 4.107 5 C -0.143 4.143 6 C -0.240 4.240 7 C 0.375 3.625 8 O -0.408 6.408 9 N -0.373 5.373 10 C 0.043 3.957 11 H 0.109 0.891 12 C -0.164 4.164 13 C -0.152 4.152 14 C -0.108 4.108 15 H 0.099 0.901 16 C 0.001 3.999 17 O -0.378 6.378 18 C -0.145 4.145 19 C -0.171 4.171 20 C -0.041 4.041 21 O -0.062 6.062 22 H 0.232 0.768 23 H 0.151 0.849 24 H -0.178 1.178 25 H -0.171 1.171 26 H 0.179 0.821 27 H 0.230 0.770 28 H 0.102 0.898 29 H 0.092 0.908 30 H 0.089 0.911 31 H 0.078 0.922 32 H 0.063 0.937 33 H 0.062 0.938 34 H 0.227 0.773 35 H 0.090 0.910 36 H 0.077 0.923 37 H 0.089 0.911 38 H 0.092 0.908 39 H 0.228 0.772 Dipole moment (debyes) X Y Z Total from point charges 3.106 4.389 2.936 6.126 hybrid contribution 0.384 0.029 0.577 0.694 sum 3.490 4.418 3.512 6.636 Atomic orbital electron populations 1.86581 1.16101 1.81744 1.49107 1.24468 0.85276 1.11359 0.92802 0.94261 0.81353 0.76574 0.87200 1.22738 1.01686 0.93507 0.92746 1.22549 1.01012 0.95356 0.95374 1.21567 1.08819 0.94407 0.99228 1.17265 0.77993 0.87068 0.80203 1.90820 1.46320 1.35593 1.68030 1.45949 1.57595 1.12691 1.21071 1.20988 0.95099 0.86407 0.93254 0.89081 1.21821 0.97326 1.00019 0.97273 1.21520 0.97579 0.98412 0.97673 1.21193 0.95238 0.99068 0.95299 0.90117 1.22227 0.88555 0.97408 0.91683 1.86485 1.50751 1.50865 1.49691 1.21472 0.98008 0.98487 0.96533 1.21949 0.98098 0.99211 0.97839 1.24425 0.99668 0.86762 0.93289 1.83676 1.57320 1.38822 1.26356 0.76821 0.84935 1.17781 1.17114 0.82070 0.76957 0.89833 0.90837 0.91054 0.92152 0.93661 0.93780 0.77271 0.91033 0.92293 0.91144 0.90751 0.77153 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.53 0.17 12.88 -35.23 -0.45 -0.29 16 2 C -0.03 0.02 2.97 36.01 0.11 0.13 16 3 Si 0.71 -1.12 32.09 -169.99 -5.46 -6.57 16 4 C -0.06 -0.02 6.18 -35.74 -0.22 -0.24 16 5 C -0.12 -0.26 10.90 -37.45 -0.41 -0.67 16 6 C -0.24 -0.31 6.31 -103.28 -0.65 -0.96 16 7 C 0.59 1.60 7.78 -12.54 -0.10 1.51 16 8 O -0.53 -3.73 16.65 5.26 0.09 -3.65 16 9 N -0.72 0.51 4.22 -54.89 -0.23 0.28 16 10 C 0.15 -0.06 2.78 -67.93 -0.19 -0.25 16 11 H 0.09 0.14 7.58 -51.93 -0.39 -0.26 16 12 C -0.13 0.32 5.61 -26.73 -0.15 0.17 16 13 C -0.11 0.38 5.03 -26.73 -0.13 0.24 16 14 C -0.09 0.14 2.43 -90.62 -0.22 -0.08 16 15 H 0.08 -0.03 8.14 -51.93 -0.42 -0.46 16 16 C 0.08 -0.14 6.43 37.15 0.24 0.10 16 17 O -0.57 0.06 13.19 -35.23 -0.46 -0.41 16 18 C -0.11 0.04 4.94 -26.73 -0.13 -0.09 16 19 C -0.13 -0.04 5.60 -26.73 -0.15 -0.19 16 20 C 0.03 -0.05 11.61 30.07 0.35 0.30 16 21 O -0.17 0.09 8.90 7.65 0.07 0.16 16 22 H 0.38 -1.62 8.70 45.56 0.40 -1.22 16 23 H 0.13 -0.12 7.96 -51.93 -0.41 -0.53 16 24 H -0.25 -0.31 7.11 56.52 0.40 0.10 16 25 H -0.25 -0.27 7.11 56.52 0.40 0.13 16 26 H 0.16 0.44 8.06 -52.49 -0.42 0.02 16 27 H 0.40 -1.40 5.84 -40.82 -0.24 -1.64 16 28 H 0.08 -0.22 8.14 -51.93 -0.42 -0.64 16 29 H 0.07 -0.21 8.14 -51.93 -0.42 -0.63 16 30 H 0.07 -0.26 8.14 -51.93 -0.42 -0.68 16 31 H 0.06 -0.27 6.51 -51.93 -0.34 -0.60 16 32 H 0.05 -0.12 8.14 -51.93 -0.42 -0.54 16 33 H 0.04 -0.12 8.14 -51.93 -0.42 -0.54 16 34 H 0.38 -1.55 9.12 45.56 0.42 -1.14 16 35 H 0.07 0.09 7.82 -51.93 -0.41 -0.31 16 36 H 0.06 -0.04 7.60 -51.93 -0.39 -0.43 16 37 H 0.07 0.17 8.14 -51.93 -0.42 -0.25 16 38 H 0.07 -0.01 8.14 -51.93 -0.42 -0.43 16 39 H 0.21 -1.32 7.47 -52.49 -0.39 -1.72 16 LS Contribution 322.52 15.07 4.86 4.86 Total: 0.00 -9.42 322.52 -8.02 -17.44 By element: Atomic # 1 Polarization: -7.02 SS G_CDS: -4.77 Total: -11.78 kcal Atomic # 6 Polarization: 1.62 SS G_CDS: -1.66 Total: -0.04 kcal Atomic # 7 Polarization: 0.51 SS G_CDS: -0.23 Total: 0.28 kcal Atomic # 8 Polarization: -3.42 SS G_CDS: -0.76 Total: -4.18 kcal Atomic # 14 Polarization: -1.12 SS G_CDS: -5.46 Total: -6.57 kcal Total LS contribution 4.86 Total: 4.86 kcal Total: -9.42 -8.02 -17.44 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_7207534_13456056.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -91.381 kcal (2) G-P(sol) polarization free energy of solvation -9.422 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -100.803 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.016 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -17.438 kcal (6) G-S(sol) free energy of system = (1) + (5) -108.819 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds