Wall clock time and date at job start Mon Mar 8 2021 02:33:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42902 * 1 3 3 Si 1.86292 * 109.47101 * 2 1 4 4 C 1.50702 * 109.46705 * 119.99975 * 2 1 3 5 5 C 1.34852 * 125.88496 * 244.96973 * 4 2 1 6 6 C 1.40894 * 107.41420 * 180.02562 * 5 4 2 7 7 C 1.34854 * 107.41693 * 0.02562 * 6 5 4 8 8 C 1.50696 * 125.89158 * 179.97438 * 7 6 5 9 9 C 1.50706 * 109.47259 * 85.02223 * 8 7 6 10 10 O 1.21283 * 119.99503 * 0.02562 * 9 8 7 11 11 N 1.34773 * 120.00081 * 179.72770 * 9 8 7 12 12 C 1.46506 * 119.99968 * 180.02562 * 11 9 8 13 13 H 1.09000 * 109.46738 * 324.99609 * 12 11 9 14 14 C 1.52993 * 109.47171 * 84.99494 * 12 11 9 15 15 C 1.53002 * 109.47290 * 60.00189 * 14 12 11 16 16 C 1.52997 * 109.46906 * 59.99926 * 15 14 12 17 17 H 1.09002 * 109.47380 * 60.00090 * 16 15 14 18 18 C 1.52996 * 109.47138 * 180.02562 * 16 15 14 19 19 O 1.42905 * 109.46978 * 294.99863 * 18 16 15 20 20 C 1.53006 * 109.47071 * 299.99931 * 16 15 14 21 21 C 1.52994 * 109.46945 * 204.99736 * 12 11 9 22 22 N 1.36338 * 125.89282 * 65.31049 * 4 2 1 23 23 H 0.96704 * 114.00110 * 300.00345 * 1 2 3 24 24 H 1.09001 * 109.46832 * 239.99719 * 2 1 3 25 25 H 1.48507 * 109.99910 * 299.99764 * 3 2 1 26 26 H 1.48497 * 110.00456 * 61.31931 * 3 2 1 27 27 H 1.07999 * 126.29573 * 0.04964 * 5 4 2 28 28 H 1.07993 * 126.29350 * 180.02562 * 6 5 4 29 29 H 1.09001 * 109.47545 * 325.02563 * 8 7 6 30 30 H 1.08998 * 109.47669 * 205.02506 * 8 7 6 31 31 H 0.96998 * 120.00525 * 359.97438 * 11 9 8 32 32 H 1.09002 * 109.46922 * 180.02562 * 14 12 11 33 33 H 1.09007 * 109.47428 * 300.00223 * 14 12 11 34 34 H 1.09002 * 109.47028 * 299.99801 * 15 14 12 35 35 H 1.08997 * 109.47064 * 179.97438 * 15 14 12 36 36 H 1.08999 * 109.46994 * 54.99816 * 18 16 15 37 37 H 1.09003 * 109.47662 * 174.99923 * 18 16 15 38 38 H 0.96701 * 113.99399 * 179.97438 * 19 18 16 39 39 H 1.09002 * 109.47148 * 300.00301 * 20 16 15 40 40 H 1.09003 * 109.46845 * 180.02562 * 20 16 15 41 41 H 1.09006 * 109.47305 * 59.99718 * 21 12 11 42 42 H 1.09002 * 109.47025 * 179.97438 * 21 12 11 43 43 H 0.96998 * 125.63591 * 359.97137 * 22 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4290 0.0000 0.0000 3 14 2.0500 1.7564 0.0000 4 6 1.9313 -0.7104 1.2305 5 6 2.6305 -0.1487 2.2375 6 6 2.8983 -1.1606 3.1806 7 6 2.3530 -2.3021 2.7138 8 6 2.3943 -3.6448 3.3967 9 6 1.2627 -3.7394 4.3876 10 8 0.4978 -2.8083 4.5252 11 7 1.0972 -4.8609 5.1165 12 6 -0.0032 -4.9531 6.0793 13 1 -0.1726 -3.9761 6.5320 14 6 -1.2739 -5.4089 5.3594 15 6 -1.0361 -6.7802 4.7240 16 6 -0.6767 -7.7919 5.8140 17 1 -1.4953 -7.8605 6.5304 18 6 -0.4383 -9.1631 5.1785 19 8 -1.6572 -9.6412 4.6061 20 6 0.5942 -7.3361 6.5339 21 6 0.3564 -5.9648 7.1692 22 7 1.7627 -2.0332 1.5146 23 1 -0.3933 0.4418 0.7650 24 1 1.7923 -0.5139 -0.8900 25 1 1.5615 2.4678 -1.2086 26 1 1.5879 2.4586 1.2242 27 1 2.9299 0.8866 2.3082 28 1 3.4406 -1.0435 4.1072 29 1 3.3445 -3.7580 3.9186 30 1 2.2924 -4.4345 2.6524 31 1 1.7062 -5.6074 5.0031 32 1 -2.0927 -5.4770 6.0758 33 1 -1.5300 -4.6881 4.5828 34 1 -0.2174 -6.7117 4.0076 35 1 -1.9416 -7.1051 4.2115 36 1 0.3193 -9.0758 4.3997 37 1 -0.0962 -9.8627 5.9413 38 1 -1.5801 -10.5079 4.1841 39 1 1.4129 -7.2675 5.8175 40 1 0.8505 -8.0571 7.3101 41 1 1.2617 -5.6400 7.6821 42 1 -0.4621 -6.0330 7.8859 43 1 1.2976 -2.6762 0.9568 There are 55 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 55 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_7207534_14644196.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 02:33:46 Heat of formation + Delta-G solvation = -90.339448 kcal Electronic energy + Delta-G solvation = -24196.625709 eV Core-core repulsion = 20629.096285 eV Total energy + Delta-G solvation = -3567.529425 eV No. of doubly occupied orbitals = 55 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 295.162 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -42.34834 -41.19647 -39.44131 -37.87907 -37.45041 -34.77543 -33.24519 -31.94318 -31.83560 -31.43186 -29.24795 -26.40985 -25.18185 -23.69960 -22.55165 -21.99973 -21.36893 -21.03710 -20.18599 -19.06550 -18.32356 -18.17875 -17.27713 -16.70806 -16.58946 -16.39137 -16.11557 -15.75631 -15.41718 -15.07626 -15.05185 -14.70143 -14.57414 -14.26413 -14.06247 -13.94318 -13.85907 -13.64746 -13.40116 -13.17926 -13.01318 -12.77767 -12.44094 -12.20154 -12.14824 -11.85825 -11.57507 -11.32270 -11.12009 -10.96287 -10.83054 -10.82038 -10.05367 -9.80476 -8.97436 -4.88527 1.08786 1.29301 1.64466 1.67190 1.84967 1.94282 2.33056 2.51813 3.30322 3.36592 3.63781 3.68520 3.72396 3.80712 3.89117 4.01523 4.09052 4.20022 4.28221 4.40734 4.41211 4.41872 4.47535 4.48659 4.49934 4.61757 4.66179 4.73221 4.75271 4.79937 4.99446 5.05285 5.08145 5.13960 5.22328 5.25088 5.28610 5.38784 5.43545 5.54943 5.98287 6.12798 6.36901 6.54553 6.67059 6.89094 7.28959 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.555 6.555 2 C -0.064 4.064 3 Si 0.801 3.199 4 C -0.018 4.018 5 C -0.202 4.202 6 C -0.200 4.200 7 C 0.035 3.965 8 C -0.068 4.068 9 C 0.509 3.491 10 O -0.579 6.579 11 N -0.709 5.709 12 C 0.149 3.851 13 H 0.064 0.936 14 C -0.128 4.128 15 C -0.099 4.099 16 C -0.088 4.088 17 H 0.064 0.936 18 C 0.076 3.924 19 O -0.599 6.599 20 C -0.108 4.108 21 C -0.120 4.120 22 N -0.537 5.537 23 H 0.385 0.615 24 H 0.127 0.873 25 H -0.297 1.297 26 H -0.291 1.291 27 H 0.149 0.851 28 H 0.141 0.859 29 H 0.145 0.855 30 H 0.127 0.873 31 H 0.414 0.586 32 H 0.068 0.932 33 H 0.039 0.961 34 H 0.066 0.934 35 H 0.048 0.952 36 H 0.057 0.943 37 H 0.057 0.943 38 H 0.395 0.605 39 H 0.080 0.920 40 H 0.082 0.918 41 H 0.084 0.916 42 H 0.079 0.921 43 H 0.418 0.582 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.990 -6.850 0.970 9.834 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.363 6.363 2 C -0.172 4.172 3 Si 0.705 3.295 4 C -0.131 4.131 5 C -0.227 4.227 6 C -0.225 4.225 7 C -0.079 4.079 8 C -0.108 4.108 9 C 0.296 3.704 10 O -0.458 6.458 11 N -0.363 5.363 12 C 0.044 3.956 13 H 0.082 0.918 14 C -0.166 4.166 15 C -0.137 4.137 16 C -0.107 4.107 17 H 0.083 0.917 18 C -0.002 4.002 19 O -0.408 6.408 20 C -0.146 4.146 21 C -0.157 4.157 22 N -0.133 5.133 23 H 0.234 0.766 24 H 0.144 0.856 25 H -0.224 1.224 26 H -0.218 1.218 27 H 0.167 0.833 28 H 0.159 0.841 29 H 0.163 0.837 30 H 0.145 0.855 31 H 0.253 0.747 32 H 0.087 0.913 33 H 0.058 0.942 34 H 0.085 0.915 35 H 0.067 0.933 36 H 0.075 0.925 37 H 0.075 0.925 38 H 0.244 0.756 39 H 0.098 0.902 40 H 0.101 0.899 41 H 0.103 0.897 42 H 0.098 0.902 43 H 0.255 0.745 Dipole moment (debyes) X Y Z Total from point charges 6.031 -5.235 0.666 8.014 hybrid contribution -1.361 -1.104 0.076 1.754 sum 4.671 -6.339 0.742 7.909 Atomic orbital electron populations 1.86537 1.18986 1.80606 1.50144 1.25031 0.83040 1.12448 0.96710 0.93405 0.89974 0.70052 0.76049 1.20896 1.07227 0.84727 1.00261 1.20913 1.05818 1.00238 0.95718 1.20846 1.07817 0.92391 1.01429 1.19918 1.02513 0.96976 0.88477 1.20268 0.99384 0.93630 0.97496 1.21057 0.85892 0.81869 0.81550 1.90751 1.47401 1.39542 1.68129 1.45985 1.32015 1.17496 1.40796 1.20836 0.86165 0.99251 0.89375 0.91793 1.21864 0.97854 0.97008 0.99918 1.21376 1.01311 0.93350 0.97637 1.21181 0.99050 0.93304 0.97125 0.91734 1.22332 0.85987 0.94923 0.96912 1.86448 1.35232 1.41255 1.77818 1.21503 0.96376 0.96437 1.00251 1.21771 1.03415 0.93968 0.96588 1.41901 1.44127 1.09137 1.18102 0.76562 0.85564 1.22450 1.21762 0.83340 0.84119 0.83677 0.85509 0.74727 0.91289 0.94166 0.91515 0.93340 0.92463 0.92493 0.75556 0.90173 0.89904 0.89723 0.90196 0.74455 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.55 -3.32 12.88 -148.98 -1.92 -5.24 16 2 C -0.06 -0.13 3.08 71.24 0.22 0.09 16 3 Si 0.80 0.25 30.60 68.60 2.10 2.35 16 4 C -0.02 -0.08 6.50 41.08 0.27 0.19 16 5 C -0.20 -1.07 9.37 22.14 0.21 -0.86 16 6 C -0.20 -1.11 10.77 22.14 0.24 -0.87 16 7 C 0.04 0.11 5.66 41.08 0.23 0.34 16 8 C -0.07 0.30 6.24 29.10 0.18 0.48 16 9 C 0.51 1.08 7.79 87.66 0.68 1.76 16 10 O -0.58 -7.76 15.70 -3.04 -0.05 -7.80 16 11 N -0.71 2.51 4.23 -442.54 -1.87 0.64 16 12 C 0.15 -0.07 2.78 44.99 0.13 0.05 16 13 H 0.06 0.32 7.58 -2.39 -0.02 0.30 16 14 C -0.13 -0.29 5.60 30.59 0.17 -0.11 16 15 C -0.10 0.02 4.94 30.59 0.15 0.17 16 16 C -0.09 0.28 2.43 -10.79 -0.03 0.26 16 17 H 0.06 0.00 8.14 -2.39 -0.02 -0.02 16 18 C 0.08 -0.32 6.43 71.98 0.46 0.14 16 19 O -0.60 -0.05 13.20 -148.98 -1.97 -2.01 16 20 C -0.11 0.87 5.03 30.60 0.15 1.02 16 21 C -0.12 0.68 5.61 30.59 0.17 0.86 16 22 N -0.54 -1.67 6.07 -171.12 -1.04 -2.71 16 23 H 0.39 0.93 8.70 -74.05 -0.64 0.29 16 24 H 0.13 -0.11 7.96 -2.39 -0.02 -0.13 16 25 H -0.30 -1.97 7.11 99.48 0.71 -1.26 16 26 H -0.29 -1.68 7.11 99.48 0.71 -0.98 16 27 H 0.15 0.34 6.24 -2.91 -0.02 0.32 16 28 H 0.14 0.47 8.06 -2.91 -0.02 0.45 16 29 H 0.15 -1.45 8.14 -2.39 -0.02 -1.47 16 30 H 0.13 -1.26 8.14 -2.39 -0.02 -1.28 16 31 H 0.41 -4.20 6.87 -92.71 -0.64 -4.83 16 32 H 0.07 0.18 8.14 -2.39 -0.02 0.16 16 33 H 0.04 0.31 8.14 -2.38 -0.02 0.29 16 34 H 0.07 -0.13 7.60 -2.39 -0.02 -0.15 16 35 H 0.05 0.21 7.82 -2.39 -0.02 0.20 16 36 H 0.06 -0.39 8.14 -2.39 -0.02 -0.41 16 37 H 0.06 -0.36 8.14 -2.39 -0.02 -0.38 16 38 H 0.39 -3.19 9.12 -74.06 -0.68 -3.86 16 39 H 0.08 -0.91 6.51 -2.39 -0.02 -0.92 16 40 H 0.08 -0.77 8.14 -2.39 -0.02 -0.79 16 41 H 0.08 -0.61 8.14 -2.38 -0.02 -0.63 16 42 H 0.08 -0.40 8.14 -2.39 -0.02 -0.42 16 43 H 0.42 -0.08 8.96 -92.71 -0.83 -0.91 16 Total: 0.00 -24.52 345.95 -3.21 -27.73 By element: Atomic # 1 Polarization: -14.76 SS G_CDS: -1.70 Total: -16.45 kcal Atomic # 6 Polarization: 0.26 SS G_CDS: 3.24 Total: 3.50 kcal Atomic # 7 Polarization: 0.84 SS G_CDS: -2.91 Total: -2.07 kcal Atomic # 8 Polarization: -11.12 SS G_CDS: -3.93 Total: -15.05 kcal Atomic # 14 Polarization: 0.25 SS G_CDS: 2.10 Total: 2.35 kcal Total: -24.52 -3.21 -27.73 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_7207534_14644196.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -62.614 kcal (2) G-P(sol) polarization free energy of solvation -24.520 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -87.134 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.206 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -27.725 kcal (6) G-S(sol) free energy of system = (1) + (5) -90.339 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds