Wall clock time and date at job start Mon Mar 8 2021 02:34:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42907 * 1 3 3 Si 1.86298 * 109.46858 * 2 1 4 4 C 1.50699 * 109.46603 * 119.99410 * 2 1 3 5 5 C 1.38250 * 119.94363 * 244.72997 * 4 2 1 6 6 C 1.38172 * 120.05449 * 179.72884 * 5 4 2 7 7 C 1.38703 * 119.94354 * 0.54454 * 6 5 4 8 8 O 1.35903 * 120.05638 * 179.70879 * 7 6 5 9 9 C 1.42894 * 117.00038 * 0.02562 * 8 7 6 10 10 C 1.50696 * 109.47500 * 180.02562 * 9 8 7 11 11 O 1.21282 * 119.99749 * 0.02562 * 10 9 8 12 12 N 1.34768 * 120.00227 * 180.02562 * 10 9 8 13 13 C 1.46506 * 120.00185 * 179.97438 * 12 10 9 14 14 H 1.08998 * 109.46909 * 325.00226 * 13 12 10 15 15 C 1.53001 * 109.46727 * 85.00080 * 13 12 10 16 16 C 1.52998 * 109.47351 * 60.00409 * 15 13 12 17 17 C 1.52999 * 109.47258 * 59.99561 * 16 15 13 18 18 H 1.08997 * 109.47338 * 59.99944 * 17 16 15 19 19 C 1.52991 * 109.47287 * 180.02562 * 17 16 15 20 20 O 1.42902 * 109.47380 * 294.99766 * 19 17 16 21 21 C 1.53001 * 109.47298 * 300.00471 * 17 16 15 22 22 C 1.52998 * 109.47351 * 59.99586 * 21 17 16 23 23 C 1.38762 * 119.88925 * 359.72752 * 7 6 5 24 24 N 1.48005 * 120.02662 * 179.97438 * 23 7 6 25 25 O 1.21796 * 119.99783 * 180.02562 * 24 23 7 26 26 O 1.21798 * 120.00147 * 0.02562 * 24 23 7 27 27 C 1.38121 * 119.94211 * 0.02562 * 23 7 6 28 28 H 0.96697 * 114.00527 * 300.00583 * 1 2 3 29 29 H 1.08996 * 109.47455 * 239.99290 * 2 1 3 30 30 H 1.48506 * 109.99834 * 178.67912 * 3 2 1 31 31 H 1.48502 * 110.00011 * 299.99177 * 3 2 1 32 32 H 1.08003 * 119.97006 * 359.97438 * 5 4 2 33 33 H 1.08000 * 120.02384 * 180.27848 * 6 5 4 34 34 H 1.09007 * 109.47025 * 300.00436 * 9 8 7 35 35 H 1.09004 * 109.46877 * 60.00343 * 9 8 7 36 36 H 0.96998 * 120.00580 * 0.02562 * 12 10 9 37 37 H 1.09007 * 109.46610 * 180.02562 * 15 13 12 38 38 H 1.08998 * 109.47478 * 299.99844 * 15 13 12 39 39 H 1.09001 * 109.46788 * 300.00018 * 16 15 13 40 40 H 1.08996 * 109.47424 * 179.97438 * 16 15 13 41 41 H 1.08999 * 109.47380 * 55.00045 * 19 17 16 42 42 H 1.09002 * 109.47066 * 175.00264 * 19 17 16 43 43 H 0.96700 * 114.00317 * 179.97438 * 20 19 17 44 44 H 1.09001 * 109.47189 * 299.99814 * 21 17 16 45 45 H 1.08998 * 109.47478 * 180.02562 * 21 17 16 46 46 H 1.08996 * 109.47424 * 180.02562 * 22 21 17 47 47 H 1.08998 * 109.47238 * 60.00217 * 22 21 17 48 48 H 1.07995 * 119.96746 * 179.97438 * 27 23 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4291 0.0000 0.0000 3 14 2.0500 1.7565 0.0000 4 6 1.9313 -0.7103 1.2306 5 6 2.6434 -0.0121 2.1880 6 6 3.1001 -0.6598 3.3199 7 6 2.8533 -2.0141 3.4896 8 8 3.3066 -2.6548 4.5991 9 6 4.0299 -1.8715 5.5505 10 6 4.4501 -2.7448 6.7046 11 8 4.1592 -3.9222 6.7114 12 7 5.1491 -2.2174 7.7290 13 6 5.5572 -3.0662 8.8512 14 1 4.7858 -3.8124 9.0416 15 6 6.8724 -3.7685 8.5075 16 6 7.9551 -2.7211 8.2403 17 6 8.1489 -1.8579 9.4886 18 1 8.4524 -2.4894 10.3236 19 6 9.2312 -0.8102 9.2213 20 8 10.4855 -1.4629 9.0147 21 6 6.8337 -1.1557 9.8323 22 6 5.7509 -2.2031 10.0995 23 6 2.1432 -2.7139 2.5244 24 7 1.8786 -4.1592 2.7022 25 8 1.2556 -4.7730 1.8545 26 8 2.2838 -4.7348 3.6961 27 6 1.6844 -2.0607 1.3972 28 1 -0.3934 0.4417 0.7649 29 1 1.7924 -0.5139 -0.8899 30 1 3.5346 1.7703 0.0322 31 1 1.5616 2.4678 -1.2086 32 1 2.8395 1.0414 2.0530 33 1 3.6525 -0.1129 4.0696 34 1 4.9145 -1.4479 5.0749 35 1 3.3934 -1.0660 5.9169 36 1 5.3815 -1.2757 7.7238 37 1 7.1757 -4.4004 9.3424 38 1 6.7343 -4.3835 7.6183 39 1 7.6515 -2.0895 7.4055 40 1 8.8922 -3.2213 7.9959 41 1 8.9696 -0.2362 8.3323 42 1 9.3072 -0.1397 10.0773 43 1 11.2194 -0.8583 8.8388 44 1 6.5301 -0.5241 8.9975 45 1 6.9718 -0.5404 10.7214 46 1 4.8139 -1.7028 10.3439 47 1 6.0545 -2.8347 10.9344 48 1 1.1320 -2.6050 0.6456 There are 68 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 68 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_22_7207534_4549638.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 02:34:32 Heat of formation + Delta-G solvation = -125.765169 kcal Electronic energy + Delta-G solvation = -33670.330701 eV Core-core repulsion = 28888.766244 eV Total energy + Delta-G solvation = -4781.564456 eV No. of doubly occupied orbitals = 68 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 367.160 amu Computer time = 1.15 seconds Orbital eigenvalues (eV) -43.02364 -41.83359 -41.23394 -39.98694 -39.14922 -37.63755 -37.45327 -37.11749 -34.90367 -33.52422 -32.47079 -32.02364 -31.90084 -29.67672 -27.59125 -26.81028 -26.38491 -24.23269 -23.81556 -22.87263 -22.42043 -22.06582 -20.54760 -20.23940 -19.45006 -19.22737 -18.68178 -18.34810 -18.32282 -18.25782 -17.68066 -17.25762 -16.94141 -16.57581 -16.49446 -16.27773 -15.93611 -15.87601 -15.66419 -15.15152 -15.04501 -14.96178 -14.82943 -14.14956 -14.07279 -14.02142 -13.93758 -13.52909 -13.33646 -13.28770 -13.14784 -12.62648 -12.55940 -12.41862 -12.30558 -12.19808 -12.15357 -11.84989 -11.73269 -11.70334 -11.45676 -11.24299 -10.97082 -10.94385 -10.93656 -10.76413 -10.16571 -9.92546 -5.31941 -1.13932 -0.39247 0.37673 0.53034 0.99838 1.09455 1.36199 1.44125 1.74962 1.92111 2.22314 2.97499 3.01788 3.06089 3.19255 3.25446 3.38867 3.49675 3.53777 3.55777 3.58219 3.62696 3.69213 3.77452 3.89295 4.09409 4.12367 4.14591 4.22479 4.29696 4.30048 4.31525 4.37641 4.41488 4.46921 4.53346 4.60638 4.66264 4.84114 4.89618 4.91318 4.96497 4.98598 5.17003 5.28991 5.31293 5.38254 5.45981 5.70392 6.27932 6.32030 6.57293 6.93793 7.06179 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.535 6.535 2 C -0.066 4.066 3 Si 0.690 3.310 4 C -0.158 4.158 5 C -0.023 4.023 6 C -0.210 4.210 7 C 0.200 3.800 8 O -0.253 6.253 9 C 0.030 3.970 10 C 0.513 3.487 11 O -0.495 6.495 12 N -0.720 5.720 13 C 0.148 3.852 14 H 0.093 0.907 15 C -0.134 4.134 16 C -0.107 4.107 17 C -0.090 4.090 18 H 0.081 0.919 19 C 0.079 3.921 20 O -0.573 6.573 21 C -0.114 4.114 22 C -0.126 4.126 23 C -0.076 4.076 24 N 0.028 4.972 25 O -0.177 6.177 26 O -0.117 6.117 27 C 0.010 3.990 28 H 0.381 0.619 29 H 0.121 0.879 30 H -0.254 1.254 31 H -0.248 1.248 32 H 0.149 0.851 33 H 0.156 0.844 34 H 0.100 0.900 35 H 0.102 0.898 36 H 0.399 0.601 37 H 0.075 0.925 38 H 0.071 0.929 39 H 0.057 0.943 40 H 0.071 0.929 41 H 0.043 0.957 42 H 0.045 0.955 43 H 0.380 0.620 44 H 0.061 0.939 45 H 0.071 0.929 46 H 0.074 0.926 47 H 0.084 0.916 48 H 0.164 0.836 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.987 12.651 4.062 13.619 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.341 6.341 2 C -0.176 4.176 3 Si 0.591 3.409 4 C -0.160 4.160 5 C -0.041 4.041 6 C -0.229 4.229 7 C 0.150 3.850 8 O -0.162 6.162 9 C -0.049 4.049 10 C 0.296 3.704 11 O -0.367 6.367 12 N -0.376 5.376 13 C 0.044 3.956 14 H 0.111 0.889 15 C -0.172 4.172 16 C -0.145 4.145 17 C -0.108 4.108 18 H 0.099 0.901 19 C 0.001 3.999 20 O -0.378 6.378 21 C -0.152 4.152 22 C -0.164 4.164 23 C -0.160 4.160 24 N 0.548 4.452 25 O -0.386 6.386 26 O -0.341 6.341 27 C -0.009 4.009 28 H 0.228 0.772 29 H 0.138 0.862 30 H -0.179 1.179 31 H -0.173 1.173 32 H 0.166 0.834 33 H 0.174 0.826 34 H 0.118 0.882 35 H 0.119 0.881 36 H 0.234 0.766 37 H 0.094 0.906 38 H 0.090 0.910 39 H 0.076 0.924 40 H 0.090 0.910 41 H 0.062 0.938 42 H 0.064 0.936 43 H 0.227 0.773 44 H 0.079 0.921 45 H 0.090 0.910 46 H 0.092 0.908 47 H 0.103 0.897 48 H 0.181 0.819 Dipole moment (debyes) X Y Z Total from point charges 3.040 11.989 3.112 12.754 hybrid contribution 0.618 0.303 -0.200 0.717 sum 3.658 12.292 2.912 13.151 Atomic orbital electron populations 1.86568 1.16571 1.81619 1.49297 1.25097 0.85686 1.10260 0.96559 0.94979 0.80828 0.76990 0.88128 1.20310 1.03025 0.93490 0.99139 1.21242 0.91621 1.00009 0.91232 1.21268 1.07751 0.92095 1.01790 1.18699 0.89802 0.90861 0.85597 1.86509 1.66745 1.35580 1.27345 1.22751 0.97868 0.94464 0.89772 1.19789 0.78935 0.88554 0.83075 1.90866 1.52813 1.15642 1.77410 1.45922 1.56938 1.13450 1.21259 1.21017 0.97070 0.92775 0.84709 0.88872 1.21961 0.94203 0.98133 1.02931 1.21475 0.99080 0.97274 0.96674 1.21197 0.93311 0.96836 0.99499 0.90069 1.22225 0.84220 0.94320 0.99104 1.86487 1.18519 1.38235 1.94565 1.21522 0.94162 0.97764 1.01741 1.21820 0.99317 0.98061 0.97192 1.20595 1.12787 0.82537 1.00084 1.43336 0.99004 1.02429 1.00394 1.94556 1.39612 1.66223 1.38178 1.94701 1.51890 1.69140 1.18386 1.20844 0.92453 0.93908 0.93715 0.77155 0.86211 1.17866 1.17261 0.83408 0.82610 0.88216 0.88065 0.76600 0.90598 0.91039 0.92405 0.91009 0.93849 0.93640 0.77253 0.92084 0.91047 0.90767 0.89745 0.81857 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.54 0.89 12.83 -35.23 -0.45 0.44 16 2 C -0.07 0.17 2.80 36.01 0.10 0.27 16 3 Si 0.69 -2.65 29.80 -169.99 -5.06 -7.72 16 4 C -0.16 0.34 5.35 -104.60 -0.56 -0.22 16 5 C -0.02 0.09 8.66 -39.60 -0.34 -0.25 16 6 C -0.21 0.73 9.04 -39.43 -0.36 0.37 16 7 C 0.20 0.13 6.67 -39.22 -0.26 -0.14 16 8 O -0.25 -0.54 7.68 -49.79 -0.38 -0.92 16 9 C 0.03 -0.08 5.22 36.00 0.19 0.11 16 10 C 0.51 0.24 7.87 -10.99 -0.09 0.15 16 11 O -0.50 -2.99 16.16 -14.36 -0.23 -3.23 16 12 N -0.72 1.88 4.23 -53.81 -0.23 1.65 16 13 C 0.15 -0.22 2.78 -67.93 -0.19 -0.41 16 14 H 0.09 0.05 7.58 -51.93 -0.39 -0.35 16 15 C -0.13 0.07 5.60 -26.73 -0.15 -0.08 16 16 C -0.11 0.12 4.94 -26.73 -0.13 -0.01 16 17 C -0.09 0.20 2.43 -90.62 -0.22 -0.02 16 18 H 0.08 -0.08 8.14 -51.93 -0.42 -0.50 16 19 C 0.08 -0.18 6.43 37.15 0.24 0.05 16 20 O -0.57 0.27 13.20 -35.23 -0.46 -0.20 16 21 C -0.11 0.47 5.03 -26.73 -0.13 0.34 16 22 C -0.13 0.44 5.61 -26.73 -0.15 0.29 16 23 C -0.08 -0.21 6.87 -79.80 -0.55 -0.76 16 24 N 0.03 0.19 4.45 34.03 0.15 0.34 16 25 O -0.18 -1.30 18.45 -29.46 -0.54 -1.85 16 26 O -0.12 -1.02 17.24 -36.49 -0.63 -1.65 16 27 C 0.01 0.00 9.19 -39.61 -0.36 -0.36 16 28 H 0.38 -2.18 8.70 45.56 0.40 -1.78 16 29 H 0.12 -0.25 7.96 -51.93 -0.41 -0.66 16 30 H -0.25 0.47 7.11 56.52 0.40 0.88 16 31 H -0.25 0.01 7.11 56.52 0.40 0.41 16 32 H 0.15 -1.03 4.90 -52.48 -0.26 -1.29 16 33 H 0.16 -1.11 6.30 -52.49 -0.33 -1.44 16 34 H 0.10 -0.56 7.66 -51.93 -0.40 -0.96 16 35 H 0.10 -0.61 7.66 -51.93 -0.40 -1.01 16 36 H 0.40 -2.25 6.87 -40.82 -0.28 -2.54 16 37 H 0.08 -0.05 8.14 -51.92 -0.42 -0.47 16 38 H 0.07 0.13 8.14 -51.93 -0.42 -0.30 16 39 H 0.06 -0.10 7.60 -51.93 -0.39 -0.49 16 40 H 0.07 0.06 7.82 -51.93 -0.41 -0.35 16 41 H 0.04 -0.14 8.14 -51.93 -0.42 -0.57 16 42 H 0.05 -0.14 8.14 -51.93 -0.42 -0.56 16 43 H 0.38 -1.68 9.12 45.56 0.42 -1.26 16 44 H 0.06 -0.33 6.51 -51.93 -0.34 -0.67 16 45 H 0.07 -0.31 8.14 -51.93 -0.42 -0.73 16 46 H 0.07 -0.29 8.14 -51.93 -0.42 -0.71 16 47 H 0.08 -0.28 8.14 -51.93 -0.42 -0.71 16 48 H 0.16 0.09 7.61 -52.49 -0.40 -0.31 16 LS Contribution 394.17 15.07 5.94 5.94 Total: 0.00 -13.56 394.17 -10.65 -24.21 By element: Atomic # 1 Polarization: -10.59 SS G_CDS: -5.78 Total: -16.36 kcal Atomic # 6 Polarization: 2.31 SS G_CDS: -2.97 Total: -0.65 kcal Atomic # 7 Polarization: 2.06 SS G_CDS: -0.08 Total: 1.99 kcal Atomic # 8 Polarization: -4.70 SS G_CDS: -2.70 Total: -7.40 kcal Atomic # 14 Polarization: -2.65 SS G_CDS: -5.06 Total: -7.72 kcal Total LS contribution 5.94 Total: 5.94 kcal Total: -13.56 -10.65 -24.21 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_7207534_4549638.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -101.553 kcal (2) G-P(sol) polarization free energy of solvation -13.563 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -115.116 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.649 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -24.212 kcal (6) G-S(sol) free energy of system = (1) + (5) -125.765 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.16 seconds