Wall clock time and date at job start Mon Mar 8 2021 02:34:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42900 * 1 3 3 Si 1.86300 * 109.47341 * 2 1 4 4 C 1.50695 * 109.47325 * 120.00585 * 2 1 3 5 5 C 1.38245 * 119.97401 * 244.72355 * 4 2 1 6 6 C 1.38284 * 120.11455 * 179.76237 * 5 4 2 7 7 C 1.38127 * 120.05563 * 0.50958 * 6 5 4 8 8 C 1.38755 * 119.94014 * 359.74295 * 7 6 5 9 9 O 1.35898 * 120.04997 * 179.97438 * 8 7 6 10 10 C 1.42897 * 117.00292 * 0.02562 * 9 8 7 11 11 C 1.50703 * 109.47090 * 180.02562 * 10 9 8 12 12 O 1.21287 * 119.99971 * 359.97438 * 11 10 9 13 13 N 1.34776 * 120.00146 * 179.97438 * 11 10 9 14 14 C 1.46497 * 119.99985 * 179.97438 * 13 11 10 15 15 H 1.08995 * 109.47310 * 324.99669 * 14 13 11 16 16 C 1.53007 * 109.47058 * 85.00316 * 14 13 11 17 17 C 1.53000 * 109.47148 * 59.99921 * 16 14 13 18 18 C 1.52993 * 109.47219 * 59.99986 * 17 16 14 19 19 H 1.09003 * 109.47535 * 60.00230 * 18 17 16 20 20 C 1.53008 * 109.47145 * 179.97438 * 18 17 16 21 21 O 1.42896 * 109.46875 * 295.00297 * 20 18 17 22 22 C 1.52998 * 109.47213 * 299.99894 * 18 17 16 23 23 C 1.52996 * 109.47199 * 60.00170 * 22 18 17 24 24 C 1.38173 * 119.97445 * 64.99002 * 4 2 1 25 25 H 0.96702 * 113.99767 * 300.00194 * 1 2 3 26 26 H 1.09004 * 109.46715 * 240.00184 * 2 1 3 27 27 H 1.48501 * 109.99832 * 178.68108 * 3 2 1 28 28 H 1.48498 * 109.99998 * 300.00426 * 3 2 1 29 29 H 1.08008 * 119.94059 * 359.97438 * 5 4 2 30 30 H 1.08004 * 119.97301 * 180.22654 * 6 5 4 31 31 H 1.07994 * 120.02747 * 179.71859 * 7 6 5 32 32 H 1.08999 * 109.46956 * 299.99463 * 10 9 8 33 33 H 1.08998 * 109.47330 * 60.00364 * 10 9 8 34 34 H 0.97003 * 119.99726 * 359.97438 * 13 11 10 35 35 H 1.09002 * 109.46639 * 179.97438 * 16 14 13 36 36 H 1.08994 * 109.46895 * 299.99450 * 16 14 13 37 37 H 1.09003 * 109.46679 * 299.99692 * 17 16 14 38 38 H 1.09004 * 109.46791 * 180.02562 * 17 16 14 39 39 H 1.08998 * 109.46798 * 55.00044 * 20 18 17 40 40 H 1.08992 * 109.47071 * 174.99818 * 20 18 17 41 41 H 0.96709 * 113.99665 * 179.97438 * 21 20 18 42 42 H 1.09002 * 109.46988 * 299.99808 * 22 18 17 43 43 H 1.09004 * 109.47142 * 180.02562 * 22 18 17 44 44 H 1.09004 * 109.47049 * 179.97438 * 23 22 18 45 45 H 1.09002 * 109.47205 * 60.00414 * 23 22 18 46 46 H 1.08005 * 120.02444 * 359.96439 * 24 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4290 0.0000 0.0000 3 14 2.0501 1.7564 0.0000 4 6 1.9314 -0.7105 1.2303 5 6 2.6437 -0.0131 2.1882 6 6 3.1018 -0.6611 3.3206 7 6 2.8577 -2.0097 3.4925 8 6 2.1475 -2.7131 2.5301 9 8 1.9064 -4.0401 2.6966 10 6 2.4131 -4.6472 3.8869 11 6 2.0522 -6.1103 3.8973 12 8 1.4226 -6.5862 2.9764 13 7 2.4290 -6.8900 4.9300 14 6 2.0777 -8.3122 4.9404 15 1 1.0987 -8.4480 4.4809 16 6 3.1250 -9.1020 4.1528 17 6 4.4991 -8.9114 4.7980 18 6 4.4592 -9.4163 6.2416 19 1 4.1978 -10.4745 6.2495 20 6 5.8336 -9.2262 6.8867 21 8 6.7899 -10.0547 6.2227 22 6 3.4120 -8.6265 7.0293 23 6 2.0378 -8.8171 6.3842 24 6 1.6844 -2.0597 1.3976 25 1 -0.3933 0.4417 0.7651 26 1 1.7923 -0.5138 -0.8901 27 1 3.5347 1.7702 0.0321 28 1 1.5615 2.4679 -1.2084 29 1 2.8398 1.0404 2.0533 30 1 3.6550 -0.1133 4.0692 31 1 3.2196 -2.5163 4.3749 32 1 3.4975 -4.5407 3.9157 33 1 1.9766 -4.1587 4.7580 34 1 2.9329 -6.5095 5.6664 35 1 2.8638 -10.1602 4.1609 36 1 3.1534 -8.7424 3.1242 37 1 4.7605 -7.8532 4.7901 38 1 5.2453 -9.4738 4.2365 39 1 6.1345 -8.1823 6.7995 40 1 5.7821 -9.5028 7.9397 41 1 7.6859 -9.9850 6.5799 42 1 3.6734 -7.5683 7.0216 43 1 3.3838 -8.9859 8.0580 44 1 1.2917 -8.2548 6.9457 45 1 1.7764 -9.8753 6.3920 46 1 1.1311 -2.6049 0.6472 There are 60 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 60 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_22_7207534_4860298.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 02:34:44 Heat of formation + Delta-G solvation = -133.280586 kcal Electronic energy + Delta-G solvation = -27061.321434 eV Core-core repulsion = 23110.447520 eV Total energy + Delta-G solvation = -3950.873914 eV No. of doubly occupied orbitals = 60 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 322.166 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -41.67522 -41.05375 -39.68308 -38.79835 -37.53677 -37.17494 -34.85935 -32.52196 -32.22580 -31.90871 -31.34117 -29.09648 -26.84491 -26.34649 -23.80680 -23.69808 -23.04217 -22.18710 -21.74417 -20.28653 -19.31853 -18.67098 -18.30712 -17.69006 -17.49827 -17.27508 -16.95216 -16.70067 -16.45023 -16.13637 -15.85415 -15.71976 -15.33747 -14.99500 -14.91892 -14.84930 -14.64696 -14.15044 -14.01145 -13.95416 -13.67759 -13.39379 -13.29485 -13.13349 -12.97038 -12.58089 -12.56817 -12.29117 -12.18323 -11.96671 -11.68723 -11.66908 -11.43086 -11.22023 -10.94519 -10.86482 -10.47043 -10.12982 -9.95491 -9.28487 -5.02918 0.17880 0.38105 1.26164 1.47354 1.51095 1.64763 1.98215 2.55983 2.64730 3.08599 3.42606 3.49011 3.55149 3.60483 3.62853 3.73673 3.79194 3.85988 3.87863 3.91977 3.98716 4.12140 4.16385 4.25345 4.32414 4.33683 4.34257 4.40269 4.49470 4.51866 4.55857 4.60342 4.63128 4.86248 4.92563 4.94500 4.98693 5.00590 5.18837 5.21256 5.31410 5.32474 5.33215 5.41246 5.44493 5.63082 6.23909 6.38800 6.58606 6.59685 7.11482 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.537 6.537 2 C -0.071 4.071 3 Si 0.692 3.308 4 C -0.080 4.080 5 C -0.153 4.153 6 C -0.073 4.073 7 C -0.206 4.206 8 C 0.130 3.870 9 O -0.288 6.288 10 C 0.040 3.960 11 C 0.516 3.484 12 O -0.511 6.511 13 N -0.720 5.720 14 C 0.147 3.853 15 H 0.092 0.908 16 C -0.133 4.133 17 C -0.108 4.108 18 C -0.090 4.090 19 H 0.081 0.919 20 C 0.079 3.921 21 O -0.573 6.573 22 C -0.115 4.115 23 C -0.126 4.126 24 C -0.121 4.121 25 H 0.379 0.621 26 H 0.115 0.885 27 H -0.257 1.257 28 H -0.254 1.254 29 H 0.129 0.871 30 H 0.131 0.869 31 H 0.129 0.871 32 H 0.093 0.907 33 H 0.094 0.906 34 H 0.399 0.601 35 H 0.075 0.925 36 H 0.070 0.930 37 H 0.058 0.942 38 H 0.071 0.929 39 H 0.044 0.956 40 H 0.045 0.955 41 H 0.380 0.620 42 H 0.061 0.939 43 H 0.071 0.929 44 H 0.074 0.926 45 H 0.083 0.917 46 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.952 2.506 8.629 9.458 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.343 6.343 2 C -0.182 4.182 3 Si 0.594 3.406 4 C -0.080 4.080 5 C -0.171 4.171 6 C -0.091 4.091 7 C -0.225 4.225 8 C 0.084 3.916 9 O -0.200 6.200 10 C -0.039 4.039 11 C 0.300 3.700 12 O -0.385 6.385 13 N -0.375 5.375 14 C 0.043 3.957 15 H 0.110 0.890 16 C -0.172 4.172 17 C -0.145 4.145 18 C -0.108 4.108 19 H 0.099 0.901 20 C 0.001 3.999 21 O -0.378 6.378 22 C -0.152 4.152 23 C -0.164 4.164 24 C -0.140 4.140 25 H 0.227 0.773 26 H 0.133 0.867 27 H -0.182 1.182 28 H -0.179 1.179 29 H 0.147 0.853 30 H 0.149 0.851 31 H 0.147 0.853 32 H 0.111 0.889 33 H 0.112 0.888 34 H 0.235 0.765 35 H 0.093 0.907 36 H 0.089 0.911 37 H 0.077 0.923 38 H 0.090 0.910 39 H 0.062 0.938 40 H 0.064 0.936 41 H 0.228 0.772 42 H 0.080 0.920 43 H 0.090 0.910 44 H 0.092 0.908 45 H 0.102 0.898 46 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges 2.413 2.137 6.477 7.234 hybrid contribution 1.090 -0.259 0.897 1.436 sum 3.503 1.878 7.374 8.377 Atomic orbital electron populations 1.86531 1.16850 1.81717 1.49177 1.25138 0.85442 1.10267 0.97304 0.94700 0.80994 0.77752 0.87158 1.20160 0.97719 0.93595 0.96532 1.20923 1.01464 0.99580 0.95106 1.20907 0.97588 0.93609 0.96982 1.21292 1.04755 0.96058 1.00414 1.19049 0.95293 0.82481 0.94763 1.86178 1.73707 1.20030 1.40085 1.22475 1.00553 0.92104 0.88735 1.20016 0.79876 0.87355 0.82769 1.90790 1.38080 1.74810 1.34795 1.45946 1.58320 1.09998 1.23273 1.21004 0.99388 0.78939 0.96322 0.89019 1.21957 0.94824 1.00546 0.99848 1.21477 0.97092 1.01028 0.94939 1.21194 0.92899 1.01238 0.95479 0.90101 1.22226 0.89170 0.93440 0.95048 1.86485 1.21721 1.67606 1.62009 1.21523 0.94247 0.99998 0.99454 1.21819 0.97367 1.02772 0.94430 1.20286 1.02836 0.93663 0.97171 0.77332 0.86725 1.18231 1.17947 0.85319 0.85072 0.85274 0.88921 0.88807 0.76518 0.90651 0.91145 0.92346 0.91011 0.93800 0.93629 0.77249 0.92030 0.91032 0.90768 0.89795 0.84643 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.54 -0.56 12.83 -35.23 -0.45 -1.01 16 2 C -0.07 -0.03 2.80 36.00 0.10 0.07 16 3 Si 0.69 -0.59 29.80 -169.99 -5.07 -5.66 16 4 C -0.08 -0.07 5.35 -104.65 -0.56 -0.63 16 5 C -0.15 0.07 8.67 -39.56 -0.34 -0.27 16 6 C -0.07 0.07 10.04 -39.61 -0.40 -0.33 16 7 C -0.21 0.06 9.04 -39.43 -0.36 -0.30 16 8 C 0.13 0.28 6.69 -39.22 -0.26 0.02 16 9 O -0.29 -0.96 9.67 -39.33 -0.38 -1.34 16 10 C 0.04 -0.03 5.22 36.01 0.19 0.16 16 11 C 0.52 0.81 7.87 -10.98 -0.09 0.72 16 12 O -0.51 -3.39 16.16 -14.36 -0.23 -3.63 16 13 N -0.72 1.12 4.23 -53.80 -0.23 0.89 16 14 C 0.15 -0.12 2.78 -67.93 -0.19 -0.31 16 15 H 0.09 0.10 7.58 -51.93 -0.39 -0.30 16 16 C -0.13 0.00 5.60 -26.73 -0.15 -0.15 16 17 C -0.11 0.06 4.94 -26.73 -0.13 -0.07 16 18 C -0.09 0.15 2.43 -90.62 -0.22 -0.07 16 19 H 0.08 -0.04 8.14 -51.93 -0.42 -0.46 16 20 C 0.08 -0.14 6.43 37.16 0.24 0.10 16 21 O -0.57 0.03 13.19 -35.23 -0.46 -0.44 16 22 C -0.11 0.40 5.03 -26.73 -0.13 0.26 16 23 C -0.13 0.36 5.61 -26.73 -0.15 0.21 16 24 C -0.12 -0.31 9.62 -39.43 -0.38 -0.69 16 25 H 0.38 -1.14 8.70 45.56 0.40 -0.74 16 26 H 0.12 0.12 7.96 -51.93 -0.41 -0.30 16 27 H -0.26 -0.36 7.11 56.52 0.40 0.04 16 28 H -0.25 -0.62 7.11 56.52 0.40 -0.22 16 29 H 0.13 -0.33 4.90 -52.48 -0.26 -0.58 16 30 H 0.13 -0.44 8.06 -52.48 -0.42 -0.86 16 31 H 0.13 -0.38 6.30 -52.49 -0.33 -0.71 16 32 H 0.09 -0.29 7.66 -51.93 -0.40 -0.68 16 33 H 0.09 -0.31 7.66 -51.93 -0.40 -0.71 16 34 H 0.40 -1.75 6.87 -40.82 -0.28 -2.03 16 35 H 0.07 -0.02 8.14 -51.93 -0.42 -0.44 16 36 H 0.07 0.16 8.14 -51.93 -0.42 -0.27 16 37 H 0.06 -0.05 7.60 -51.93 -0.39 -0.45 16 38 H 0.07 0.09 7.82 -51.93 -0.41 -0.32 16 39 H 0.04 -0.12 8.14 -51.93 -0.42 -0.54 16 40 H 0.05 -0.12 8.14 -51.93 -0.42 -0.54 16 41 H 0.38 -1.53 9.12 45.56 0.42 -1.11 16 42 H 0.06 -0.28 6.51 -51.93 -0.34 -0.62 16 43 H 0.07 -0.27 8.14 -51.93 -0.42 -0.69 16 44 H 0.07 -0.24 8.14 -51.93 -0.42 -0.66 16 45 H 0.08 -0.24 8.14 -51.93 -0.42 -0.67 16 46 H 0.14 0.45 8.06 -52.48 -0.42 0.03 16 LS Contribution 368.16 15.07 5.55 5.55 Total: 0.00 -10.43 368.16 -10.33 -20.76 By element: Atomic # 1 Polarization: -7.62 SS G_CDS: -6.22 Total: -13.84 kcal Atomic # 6 Polarization: 1.54 SS G_CDS: -2.83 Total: -1.29 kcal Atomic # 7 Polarization: 1.12 SS G_CDS: -0.23 Total: 0.89 kcal Atomic # 8 Polarization: -4.89 SS G_CDS: -1.53 Total: -6.42 kcal Atomic # 14 Polarization: -0.59 SS G_CDS: -5.07 Total: -5.66 kcal Total LS contribution 5.55 Total: 5.55 kcal Total: -10.43 -10.33 -20.76 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_7207534_4860298.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -112.522 kcal (2) G-P(sol) polarization free energy of solvation -10.428 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -122.951 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.330 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -20.758 kcal (6) G-S(sol) free energy of system = (1) + (5) -133.281 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds