Wall clock time and date at job start Mon Mar 8 2021 02:34:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42900 * 1 3 3 Si 1.86300 * 109.47341 * 2 1 4 4 C 1.50695 * 109.47325 * 120.00585 * 2 1 3 5 5 C 1.38245 * 119.97401 * 244.72355 * 4 2 1 6 6 C 1.38284 * 120.11455 * 179.76237 * 5 4 2 7 7 C 1.38127 * 120.05563 * 0.50958 * 6 5 4 8 8 C 1.38755 * 119.94014 * 359.74295 * 7 6 5 9 9 O 1.35898 * 120.04997 * 179.97438 * 8 7 6 10 10 C 1.42897 * 117.00292 * 0.02562 * 9 8 7 11 11 C 1.50703 * 109.47090 * 180.02562 * 10 9 8 12 12 O 1.21287 * 119.99971 * 359.97438 * 11 10 9 13 13 N 1.34776 * 120.00146 * 179.97438 * 11 10 9 14 14 C 1.46497 * 119.99985 * 179.97438 * 13 11 10 15 15 H 1.08995 * 109.47310 * 324.99669 * 14 13 11 16 16 C 1.53007 * 109.47058 * 85.00316 * 14 13 11 17 17 C 1.53000 * 109.47148 * 59.99921 * 16 14 13 18 18 C 1.52993 * 109.47219 * 59.99986 * 17 16 14 19 19 H 1.09003 * 109.47535 * 60.00230 * 18 17 16 20 20 C 1.53008 * 109.47145 * 179.97438 * 18 17 16 21 21 O 1.42896 * 109.46875 * 295.00297 * 20 18 17 22 22 C 1.52998 * 109.47213 * 299.99894 * 18 17 16 23 23 C 1.52996 * 109.47199 * 60.00170 * 22 18 17 24 24 C 1.38173 * 119.97445 * 64.99002 * 4 2 1 25 25 H 0.96702 * 113.99767 * 300.00194 * 1 2 3 26 26 H 1.09004 * 109.46715 * 240.00184 * 2 1 3 27 27 H 1.48501 * 109.99832 * 178.68108 * 3 2 1 28 28 H 1.48498 * 109.99998 * 300.00426 * 3 2 1 29 29 H 1.08008 * 119.94059 * 359.97438 * 5 4 2 30 30 H 1.08004 * 119.97301 * 180.22654 * 6 5 4 31 31 H 1.07994 * 120.02747 * 179.71859 * 7 6 5 32 32 H 1.08999 * 109.46956 * 299.99463 * 10 9 8 33 33 H 1.08998 * 109.47330 * 60.00364 * 10 9 8 34 34 H 0.97003 * 119.99726 * 359.97438 * 13 11 10 35 35 H 1.09002 * 109.46639 * 179.97438 * 16 14 13 36 36 H 1.08994 * 109.46895 * 299.99450 * 16 14 13 37 37 H 1.09003 * 109.46679 * 299.99692 * 17 16 14 38 38 H 1.09004 * 109.46791 * 180.02562 * 17 16 14 39 39 H 1.08998 * 109.46798 * 55.00044 * 20 18 17 40 40 H 1.08992 * 109.47071 * 174.99818 * 20 18 17 41 41 H 0.96709 * 113.99665 * 179.97438 * 21 20 18 42 42 H 1.09002 * 109.46988 * 299.99808 * 22 18 17 43 43 H 1.09004 * 109.47142 * 180.02562 * 22 18 17 44 44 H 1.09004 * 109.47049 * 179.97438 * 23 22 18 45 45 H 1.09002 * 109.47205 * 60.00414 * 23 22 18 46 46 H 1.08005 * 120.02444 * 359.96439 * 24 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4290 0.0000 0.0000 3 14 2.0501 1.7564 0.0000 4 6 1.9314 -0.7105 1.2303 5 6 2.6437 -0.0131 2.1882 6 6 3.1018 -0.6611 3.3206 7 6 2.8577 -2.0097 3.4925 8 6 2.1475 -2.7131 2.5301 9 8 1.9064 -4.0401 2.6966 10 6 2.4131 -4.6472 3.8869 11 6 2.0522 -6.1103 3.8973 12 8 1.4226 -6.5862 2.9764 13 7 2.4290 -6.8900 4.9300 14 6 2.0777 -8.3122 4.9404 15 1 1.0987 -8.4480 4.4809 16 6 3.1250 -9.1020 4.1528 17 6 4.4991 -8.9114 4.7980 18 6 4.4592 -9.4163 6.2416 19 1 4.1978 -10.4745 6.2495 20 6 5.8336 -9.2262 6.8867 21 8 6.7899 -10.0547 6.2227 22 6 3.4120 -8.6265 7.0293 23 6 2.0378 -8.8171 6.3842 24 6 1.6844 -2.0597 1.3976 25 1 -0.3933 0.4417 0.7651 26 1 1.7923 -0.5138 -0.8901 27 1 3.5347 1.7702 0.0321 28 1 1.5615 2.4679 -1.2084 29 1 2.8398 1.0404 2.0533 30 1 3.6550 -0.1133 4.0692 31 1 3.2196 -2.5163 4.3749 32 1 3.4975 -4.5407 3.9157 33 1 1.9766 -4.1587 4.7580 34 1 2.9329 -6.5095 5.6664 35 1 2.8638 -10.1602 4.1609 36 1 3.1534 -8.7424 3.1242 37 1 4.7605 -7.8532 4.7901 38 1 5.2453 -9.4738 4.2365 39 1 6.1345 -8.1823 6.7995 40 1 5.7821 -9.5028 7.9397 41 1 7.6859 -9.9850 6.5799 42 1 3.6734 -7.5683 7.0216 43 1 3.3838 -8.9859 8.0580 44 1 1.2917 -8.2548 6.9457 45 1 1.7764 -9.8753 6.3920 46 1 1.1311 -2.6049 0.6472 There are 60 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 60 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_7207534_4860298.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 02:34:43 Heat of formation + Delta-G solvation = -136.460521 kcal Electronic energy + Delta-G solvation = -27061.459326 eV Core-core repulsion = 23110.447520 eV Total energy + Delta-G solvation = -3951.011806 eV No. of doubly occupied orbitals = 60 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 322.166 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -41.71341 -41.05045 -39.68362 -38.85082 -37.48230 -37.20696 -34.89184 -32.50054 -32.21145 -31.81708 -31.31541 -29.05347 -26.84885 -26.24129 -23.72233 -23.68429 -23.02965 -22.10270 -21.74462 -20.25833 -19.31987 -18.68481 -18.20455 -17.70690 -17.50095 -17.28679 -16.96269 -16.64387 -16.40752 -16.17951 -15.78630 -15.73675 -15.33223 -14.97526 -14.93285 -14.74827 -14.64100 -14.19719 -14.01879 -13.94698 -13.60068 -13.38159 -13.22084 -13.06747 -12.92506 -12.61497 -12.45288 -12.17186 -12.13449 -12.02415 -11.69385 -11.57712 -11.33882 -11.12488 -11.02154 -10.81310 -10.49791 -10.17507 -9.94812 -9.29739 -4.99443 0.19586 0.37968 1.27359 1.42062 1.49524 1.65710 1.97327 2.58484 2.66357 3.30938 3.47771 3.52996 3.66127 3.67433 3.71140 3.83672 3.89088 3.97711 4.02983 4.05098 4.11944 4.24072 4.26749 4.33624 4.40234 4.41368 4.47285 4.48259 4.48527 4.62725 4.65481 4.73022 4.74631 4.96644 4.99808 5.03445 5.08002 5.14053 5.21074 5.23532 5.36002 5.38112 5.41211 5.43870 5.47389 5.69126 6.26092 6.45183 6.74511 6.90243 7.10993 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.558 6.558 2 C -0.088 4.088 3 Si 0.798 3.202 4 C -0.085 4.085 5 C -0.155 4.155 6 C -0.069 4.069 7 C -0.202 4.202 8 C 0.113 3.887 9 O -0.324 6.324 10 C 0.038 3.962 11 C 0.511 3.489 12 O -0.574 6.574 13 N -0.700 5.700 14 C 0.148 3.852 15 H 0.067 0.933 16 C -0.130 4.130 17 C -0.101 4.101 18 C -0.088 4.088 19 H 0.066 0.934 20 C 0.076 3.924 21 O -0.600 6.600 22 C -0.109 4.109 23 C -0.119 4.119 24 C -0.153 4.153 25 H 0.396 0.604 26 H 0.098 0.902 27 H -0.280 1.280 28 H -0.302 1.302 29 H 0.152 0.848 30 H 0.165 0.835 31 H 0.161 0.839 32 H 0.123 0.877 33 H 0.128 0.872 34 H 0.418 0.582 35 H 0.073 0.927 36 H 0.040 0.960 37 H 0.066 0.934 38 H 0.049 0.951 39 H 0.057 0.943 40 H 0.057 0.943 41 H 0.395 0.605 42 H 0.080 0.920 43 H 0.084 0.916 44 H 0.086 0.914 45 H 0.083 0.917 46 H 0.109 0.891 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.329 4.252 11.930 13.385 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.366 6.366 2 C -0.196 4.196 3 Si 0.703 3.297 4 C -0.085 4.085 5 C -0.173 4.173 6 C -0.087 4.087 7 C -0.221 4.221 8 C 0.068 3.932 9 O -0.238 6.238 10 C -0.040 4.040 11 C 0.297 3.703 12 O -0.453 6.453 13 N -0.355 5.355 14 C 0.044 3.956 15 H 0.085 0.915 16 C -0.169 4.169 17 C -0.138 4.138 18 C -0.107 4.107 19 H 0.084 0.916 20 C -0.002 4.002 21 O -0.408 6.408 22 C -0.146 4.146 23 C -0.157 4.157 24 C -0.172 4.172 25 H 0.246 0.754 26 H 0.116 0.884 27 H -0.207 1.207 28 H -0.230 1.230 29 H 0.169 0.831 30 H 0.183 0.817 31 H 0.179 0.821 32 H 0.140 0.860 33 H 0.145 0.855 34 H 0.257 0.743 35 H 0.092 0.908 36 H 0.059 0.941 37 H 0.084 0.916 38 H 0.068 0.932 39 H 0.075 0.925 40 H 0.076 0.924 41 H 0.244 0.756 42 H 0.099 0.901 43 H 0.103 0.897 44 H 0.104 0.896 45 H 0.102 0.898 46 H 0.127 0.873 Dipole moment (debyes) X Y Z Total from point charges 3.811 3.865 9.857 11.253 hybrid contribution 0.670 -0.865 -0.171 1.107 sum 4.481 3.000 9.686 11.086 Atomic orbital electron populations 1.86483 1.17372 1.82333 1.50442 1.25455 0.85330 1.11997 0.96831 0.93547 0.77692 0.73935 0.84556 1.20211 0.98219 0.92990 0.97102 1.21222 1.00601 1.00639 0.94817 1.21360 0.96706 0.93473 0.97148 1.21641 1.03488 0.96422 1.00501 1.19208 0.96308 0.82297 0.95392 1.86127 1.74641 1.20917 1.42109 1.22735 1.02403 0.90175 0.88659 1.20582 0.78854 0.88590 0.82257 1.90766 1.41143 1.76103 1.37255 1.45795 1.57352 1.09461 1.22932 1.20935 0.97735 0.79299 0.97653 0.91468 1.21896 0.95939 1.00540 0.98529 1.21392 0.95614 1.01158 0.95664 1.21186 0.94067 1.00666 0.94762 0.91592 1.22333 0.88485 0.93968 0.95382 1.86449 1.23108 1.68281 1.62953 1.21513 0.92742 1.00852 0.99519 1.21781 0.98402 1.02843 0.92634 1.20309 1.04424 0.94719 0.97719 0.75426 0.88406 1.20716 1.23024 0.83060 0.81718 0.82130 0.85961 0.85458 0.74350 0.90831 0.94064 0.91558 0.93207 0.92454 0.92439 0.75555 0.90138 0.89709 0.89553 0.89841 0.87321 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.56 -2.08 12.83 -148.98 -1.91 -3.99 16 2 C -0.09 -0.21 2.80 71.23 0.20 -0.01 16 3 Si 0.80 -1.49 29.80 68.60 2.04 0.55 16 4 C -0.08 -0.23 5.35 -19.88 -0.11 -0.34 16 5 C -0.16 0.36 8.67 22.28 0.19 0.56 16 6 C -0.07 0.32 10.04 22.25 0.22 0.54 16 7 C -0.20 0.52 9.04 22.37 0.20 0.72 16 8 C 0.11 0.57 6.69 22.51 0.15 0.72 16 9 O -0.32 -2.63 9.67 -73.36 -0.71 -3.34 16 10 C 0.04 -0.08 5.22 71.24 0.37 0.30 16 11 C 0.51 2.08 7.87 87.66 0.69 2.77 16 12 O -0.57 -9.41 16.16 15.99 0.26 -9.15 16 13 N -0.70 2.35 4.23 -442.52 -1.87 0.47 16 14 C 0.15 -0.11 2.78 45.00 0.13 0.02 16 15 H 0.07 0.31 7.58 -2.39 -0.02 0.29 16 16 C -0.13 -0.26 5.60 30.60 0.17 -0.09 16 17 C -0.10 0.05 4.94 30.59 0.15 0.20 16 18 C -0.09 0.34 2.43 -10.79 -0.03 0.32 16 19 H 0.07 -0.05 8.14 -2.39 -0.02 -0.07 16 20 C 0.08 -0.37 6.43 71.98 0.46 0.10 16 21 O -0.60 0.17 13.19 -148.98 -1.97 -1.79 16 22 C -0.11 0.97 5.03 30.59 0.15 1.12 16 23 C -0.12 0.78 5.61 30.59 0.17 0.95 16 24 C -0.15 -1.16 9.62 22.37 0.22 -0.94 16 25 H 0.40 -2.05 8.70 -74.06 -0.64 -2.69 16 26 H 0.10 0.47 7.96 -2.38 -0.02 0.45 16 27 H -0.28 -0.55 7.11 99.48 0.71 0.16 16 28 H -0.30 -1.79 7.11 99.48 0.71 -1.09 16 29 H 0.15 -1.14 4.90 -2.91 -0.01 -1.15 16 30 H 0.17 -1.85 8.06 -2.91 -0.02 -1.87 16 31 H 0.16 -1.56 6.30 -2.91 -0.02 -1.58 16 32 H 0.12 -1.02 7.66 -2.39 -0.02 -1.04 16 33 H 0.13 -1.16 7.66 -2.39 -0.02 -1.18 16 34 H 0.42 -4.55 6.87 -92.71 -0.64 -5.18 16 35 H 0.07 0.14 8.14 -2.39 -0.02 0.12 16 36 H 0.04 0.32 8.14 -2.39 -0.02 0.31 16 37 H 0.07 -0.15 7.60 -2.39 -0.02 -0.17 16 38 H 0.05 0.21 7.82 -2.39 -0.02 0.19 16 39 H 0.06 -0.43 8.14 -2.39 -0.02 -0.45 16 40 H 0.06 -0.41 8.14 -2.39 -0.02 -0.43 16 41 H 0.39 -3.31 9.12 -74.05 -0.68 -3.99 16 42 H 0.08 -1.00 6.51 -2.39 -0.02 -1.02 16 43 H 0.08 -0.88 8.14 -2.39 -0.02 -0.90 16 44 H 0.09 -0.71 8.14 -2.39 -0.02 -0.73 16 45 H 0.08 -0.50 8.14 -2.39 -0.02 -0.52 16 46 H 0.11 1.25 8.06 -2.91 -0.02 1.22 16 Total: 0.00 -29.93 368.16 -1.71 -31.64 By element: Atomic # 1 Polarization: -20.41 SS G_CDS: -0.90 Total: -21.31 kcal Atomic # 6 Polarization: 3.57 SS G_CDS: 3.35 Total: 6.92 kcal Atomic # 7 Polarization: 2.35 SS G_CDS: -1.87 Total: 0.47 kcal Atomic # 8 Polarization: -13.94 SS G_CDS: -4.33 Total: -18.27 kcal Atomic # 14 Polarization: -1.49 SS G_CDS: 2.04 Total: 0.55 kcal Total: -29.93 -1.71 -31.64 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_7207534_4860298.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -104.825 kcal (2) G-P(sol) polarization free energy of solvation -29.925 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -134.750 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.711 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -31.636 kcal (6) G-S(sol) free energy of system = (1) + (5) -136.461 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds