Wall clock time and date at job start Mon Mar 8 2021 02:34:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42906 * 1 3 3 C 1.35898 * 116.99775 * 2 1 4 4 C 1.38614 * 120.02266 * 180.27592 * 3 2 1 5 5 C 1.38658 * 119.88809 * 180.20942 * 4 3 2 6 6 O 1.35898 * 120.02711 * 179.79164 * 5 4 3 7 7 C 1.42899 * 116.99885 * 359.72608 * 6 5 4 8 8 C 1.50696 * 109.46971 * 179.97438 * 7 6 5 9 9 O 1.21280 * 120.00119 * 0.02562 * 8 7 6 10 10 N 1.34779 * 120.00163 * 180.02562 * 8 7 6 11 11 C 1.46501 * 120.00246 * 180.02562 * 10 8 7 12 12 H 1.08998 * 109.47054 * 325.00425 * 11 10 8 13 13 C 1.53009 * 109.46981 * 84.99964 * 11 10 8 14 14 C 1.52989 * 109.47149 * 59.99775 * 13 11 10 15 15 C 1.53002 * 109.47252 * 60.00403 * 14 13 11 16 16 H 1.09001 * 109.47430 * 59.99214 * 15 14 13 17 17 C 1.52999 * 109.47645 * 179.97438 * 15 14 13 18 18 O 1.42905 * 109.46728 * 294.99875 * 17 15 14 19 19 C 1.53009 * 109.46714 * 299.99863 * 15 14 13 20 20 C 1.52989 * 109.47113 * 59.99678 * 19 15 14 21 21 C 1.38755 * 119.94477 * 359.51767 * 5 4 3 22 22 C 1.50695 * 119.97049 * 180.22821 * 21 5 4 23 23 O 1.42897 * 109.47544 * 285.00098 * 22 21 5 24 24 Si 1.86301 * 109.46797 * 165.00181 * 22 21 5 25 25 C 1.38198 * 120.05418 * 0.25376 * 21 5 4 26 26 C 1.38159 * 120.10860 * 359.97438 * 25 21 5 27 27 H 1.08994 * 109.46921 * 179.97438 * 1 2 3 28 28 H 1.08994 * 109.46984 * 299.99715 * 1 2 3 29 29 H 1.08997 * 109.47023 * 59.99863 * 1 2 3 30 30 H 1.07999 * 120.05847 * 359.97438 * 4 3 2 31 31 H 1.08995 * 109.47320 * 60.00153 * 7 6 5 32 32 H 1.09000 * 109.47175 * 299.99650 * 7 6 5 33 33 H 0.97000 * 119.99724 * 359.97438 * 10 8 7 34 34 H 1.08993 * 109.46833 * 180.02562 * 13 11 10 35 35 H 1.08997 * 109.46604 * 299.99780 * 13 11 10 36 36 H 1.08993 * 109.47691 * 300.00011 * 14 13 11 37 37 H 1.09006 * 109.47359 * 179.97438 * 14 13 11 38 38 H 1.09000 * 109.47486 * 174.99813 * 17 15 14 39 39 H 1.09001 * 109.47362 * 54.99090 * 17 15 14 40 40 H 0.96696 * 114.00036 * 179.97438 * 18 17 15 41 41 H 1.08999 * 109.47112 * 180.02562 * 19 15 14 42 42 H 1.09001 * 109.46642 * 299.99833 * 19 15 14 43 43 H 1.09001 * 109.47240 * 60.00521 * 20 19 15 44 44 H 1.09007 * 109.47303 * 179.97438 * 20 19 15 45 45 H 1.08997 * 109.47608 * 45.00492 * 22 21 5 46 46 H 0.96705 * 114.00043 * 300.00443 * 23 22 21 47 47 H 1.48499 * 110.00263 * 58.68146 * 24 22 21 48 48 H 1.48501 * 109.99962 * 180.02562 * 24 22 21 49 49 H 1.07999 * 119.94669 * 179.97438 * 25 21 5 50 50 H 1.07997 * 119.96766 * 180.02562 * 26 25 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0460 1.2109 0.0000 4 6 3.4302 1.2840 -0.0058 5 6 4.0567 2.5210 -0.0014 6 8 5.4136 2.5960 -0.0027 7 6 6.1316 1.3604 -0.0027 8 6 7.6124 1.6400 -0.0050 9 8 8.0135 2.7846 -0.0060 10 7 8.4912 0.6181 -0.0059 11 6 9.9308 0.8899 -0.0075 12 1 10.1310 1.7845 -0.5971 13 6 10.4102 1.1082 1.4291 14 6 10.1291 -0.1473 2.2568 15 6 10.8722 -1.3375 1.6466 16 1 11.9433 -1.1353 1.6453 17 6 10.5917 -2.5930 2.4747 18 8 11.1434 -2.4336 3.7833 19 6 10.3928 -1.5557 0.2100 20 6 10.6738 -0.3002 -0.6177 21 6 3.2971 3.6821 -0.0013 22 6 3.9775 5.0268 -0.0017 23 8 4.5041 5.2946 1.2994 24 14 2.7438 6.3467 -0.4561 25 6 1.9172 3.6065 -0.0003 26 6 1.2906 2.3752 0.0000 27 1 -0.3633 -1.0276 -0.0005 28 1 -0.3633 0.5138 0.8900 29 1 -0.3633 0.5138 -0.8900 30 1 4.0197 0.3791 -0.0099 31 1 5.8691 0.7876 -0.8921 32 1 5.8709 0.7887 0.8879 33 1 8.1705 -0.2973 -0.0047 34 1 11.4811 1.3109 1.4278 35 1 9.8808 1.9561 1.8638 36 1 9.0581 -0.3496 2.2581 37 1 10.4711 0.0080 3.2802 38 1 11.0477 -3.4568 1.9909 39 1 9.5150 -2.7453 2.5505 40 1 11.0026 -3.1932 4.3647 41 1 10.9218 -2.4039 -0.2246 42 1 9.3217 -1.7580 0.2113 43 1 11.7449 -0.0979 -0.6189 44 1 10.3327 -0.4558 -1.6412 45 1 4.7897 5.0229 -0.7287 46 1 3.8358 5.3132 1.9981 47 1 1.6154 6.3413 0.5092 48 1 3.4025 7.6777 -0.4607 49 1 1.3277 4.5114 0.0001 50 1 0.2121 2.3188 0.0004 There are 66 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 66 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_22_7207534_4974312.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 02:34:51 Heat of formation + Delta-G solvation = -164.441453 kcal Electronic energy + Delta-G solvation = -31976.218902 eV Core-core repulsion = 27549.773941 eV Total energy + Delta-G solvation = -4426.444961 eV No. of doubly occupied orbitals = 66 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 352.181 amu Computer time = 1.12 seconds Orbital eigenvalues (eV) -41.82917 -41.24762 -40.14422 -39.32290 -38.22322 -37.45853 -36.88472 -34.79946 -32.32095 -32.07633 -31.85678 -31.17946 -29.17886 -28.49115 -26.38045 -26.05823 -23.88079 -23.72017 -22.47169 -22.28510 -21.90693 -20.25975 -19.90534 -18.69096 -18.28411 -18.04730 -17.75834 -17.50131 -17.26152 -16.77691 -16.69995 -16.46014 -16.42179 -15.93912 -15.88533 -15.59563 -15.39538 -15.14069 -14.88471 -14.76759 -14.56516 -14.45432 -13.96371 -13.68320 -13.59275 -13.41379 -13.38740 -13.25906 -13.12218 -13.06849 -12.57962 -12.51001 -12.27210 -12.23708 -11.96085 -11.68104 -11.63501 -11.52171 -11.38440 -11.17897 -10.90622 -10.79257 -10.35792 -10.06636 -9.68522 -9.06752 -4.87539 0.22276 0.34612 1.40752 1.48066 1.58469 1.64249 2.06280 2.15774 2.58779 2.61314 3.12277 3.50241 3.59574 3.60696 3.64977 3.69430 3.80610 3.83732 3.88550 3.94435 3.96216 4.01878 4.03912 4.13956 4.16538 4.26547 4.29210 4.36628 4.37965 4.38759 4.41718 4.44876 4.52171 4.53855 4.60034 4.67471 4.78432 4.90150 4.97069 5.03273 5.04907 5.05388 5.23912 5.24225 5.29616 5.35897 5.37800 5.45975 5.50916 6.13148 6.32301 6.43526 6.63032 6.64739 7.18649 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.315 6.315 3 C 0.174 3.826 4 C -0.248 4.248 5 C 0.193 3.807 6 O -0.271 6.271 7 C 0.036 3.964 8 C 0.516 3.484 9 O -0.507 6.507 10 N -0.721 5.721 11 C 0.148 3.852 12 H 0.092 0.908 13 C -0.133 4.133 14 C -0.108 4.108 15 C -0.089 4.089 16 H 0.080 0.920 17 C 0.079 3.921 18 O -0.573 6.573 19 C -0.115 4.115 20 C -0.126 4.126 21 C -0.182 4.182 22 C -0.059 4.059 23 O -0.521 6.521 24 Si 0.686 3.314 25 C -0.043 4.043 26 C -0.239 4.239 27 H 0.103 0.897 28 H 0.058 0.942 29 H 0.060 0.940 30 H 0.138 0.862 31 H 0.095 0.905 32 H 0.094 0.906 33 H 0.399 0.601 34 H 0.074 0.926 35 H 0.070 0.930 36 H 0.058 0.942 37 H 0.071 0.929 38 H 0.045 0.955 39 H 0.044 0.956 40 H 0.380 0.620 41 H 0.071 0.929 42 H 0.061 0.939 43 H 0.083 0.917 44 H 0.074 0.926 45 H 0.118 0.882 46 H 0.369 0.631 47 H -0.261 1.261 48 H -0.257 1.257 49 H 0.138 0.862 50 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.809 -7.107 -2.335 8.394 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 O -0.228 6.228 3 C 0.128 3.872 4 C -0.267 4.267 5 C 0.146 3.854 6 O -0.182 6.182 7 C -0.042 4.042 8 C 0.300 3.700 9 O -0.381 6.381 10 N -0.376 5.376 11 C 0.044 3.956 12 H 0.110 0.890 13 C -0.172 4.172 14 C -0.145 4.145 15 C -0.108 4.108 16 H 0.099 0.901 17 C 0.001 3.999 18 O -0.378 6.378 19 C -0.152 4.152 20 C -0.164 4.164 21 C -0.183 4.183 22 C -0.169 4.169 23 O -0.326 6.326 24 Si 0.588 3.412 25 C -0.060 4.060 26 C -0.258 4.258 27 H 0.121 0.879 28 H 0.077 0.923 29 H 0.078 0.922 30 H 0.155 0.845 31 H 0.113 0.887 32 H 0.112 0.888 33 H 0.234 0.766 34 H 0.093 0.907 35 H 0.089 0.911 36 H 0.077 0.923 37 H 0.090 0.910 38 H 0.064 0.936 39 H 0.062 0.938 40 H 0.227 0.773 41 H 0.089 0.911 42 H 0.080 0.920 43 H 0.102 0.898 44 H 0.092 0.908 45 H 0.135 0.865 46 H 0.216 0.784 47 H -0.186 1.186 48 H -0.182 1.182 49 H 0.156 0.844 50 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges -2.967 -4.935 -2.683 6.352 hybrid contribution -0.625 -1.612 1.454 2.259 sum -3.592 -6.547 -1.229 7.568 Atomic orbital electron populations 1.23143 0.77616 1.04396 1.01780 1.86075 1.22008 1.26695 1.88015 1.18690 0.91457 0.84382 0.92665 1.20391 0.92915 0.97340 1.16044 1.18409 0.82039 0.92408 0.92519 1.86269 1.14671 1.29619 1.87660 1.22531 0.90551 0.87090 1.04076 1.19975 0.87242 0.85762 0.77015 1.90800 1.79674 1.20793 1.46812 1.45943 1.06472 1.08959 1.76249 1.20990 0.78567 0.98955 0.97076 0.89032 1.21952 1.01869 0.98479 0.94870 1.21476 0.99811 0.93584 0.99666 1.21194 1.01570 0.94421 0.93609 0.90128 1.22230 0.96809 0.97266 0.83588 1.86484 1.81271 1.45725 1.24331 1.21524 1.01158 0.98130 0.94423 1.21814 1.01418 0.93879 0.99257 1.19512 0.92729 0.94387 1.11654 1.24820 1.05951 0.97763 0.88395 1.86706 1.36913 1.92758 1.16232 0.95209 0.77610 0.78172 0.90215 1.20783 0.92695 0.97880 0.94687 1.21114 1.00423 0.91766 1.12511 0.87906 0.92308 0.92160 0.84454 0.88707 0.88824 0.76551 0.90703 0.91119 0.92317 0.91037 0.93646 0.93784 0.77277 0.91065 0.92010 0.89835 0.90780 0.86455 0.78420 1.18633 1.18190 0.84447 0.84789 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 -0.06 9.81 101.05 0.99 0.93 16 2 O -0.32 -0.30 10.49 -19.42 -0.20 -0.50 16 3 C 0.17 0.23 6.68 -39.24 -0.26 -0.03 16 4 C -0.25 -0.34 8.97 -39.29 -0.35 -0.69 16 5 C 0.19 0.50 6.66 -39.24 -0.26 0.24 16 6 O -0.27 -1.01 8.99 -39.33 -0.35 -1.36 16 7 C 0.04 0.00 5.22 36.00 0.19 0.19 16 8 C 0.52 1.10 7.87 -10.99 -0.09 1.02 16 9 O -0.51 -3.62 16.16 -14.35 -0.23 -3.85 16 10 N -0.72 0.72 4.23 -53.81 -0.23 0.49 16 11 C 0.15 -0.06 2.78 -67.93 -0.19 -0.24 16 12 H 0.09 0.14 7.58 -51.93 -0.39 -0.26 16 13 C -0.13 -0.07 5.60 -26.73 -0.15 -0.22 16 14 C -0.11 0.00 4.94 -26.74 -0.13 -0.13 16 15 C -0.09 0.11 2.43 -90.61 -0.22 -0.11 16 16 H 0.08 -0.01 8.14 -51.93 -0.42 -0.43 16 17 C 0.08 -0.11 6.43 37.16 0.24 0.13 16 18 O -0.57 -0.19 13.19 -35.23 -0.46 -0.65 16 19 C -0.11 0.34 5.03 -26.73 -0.13 0.21 16 20 C -0.13 0.31 5.61 -26.74 -0.15 0.16 16 21 C -0.18 -0.37 5.27 -104.45 -0.55 -0.92 16 22 C -0.06 -0.15 2.37 36.00 0.09 -0.06 16 23 O -0.52 -2.22 12.88 -35.23 -0.45 -2.68 16 24 Si 0.69 0.27 30.24 -169.99 -5.14 -4.87 16 25 C -0.04 -0.02 8.65 -39.62 -0.34 -0.36 16 26 C -0.24 -0.06 9.04 -39.41 -0.36 -0.42 16 27 H 0.10 -0.40 8.14 -51.93 -0.42 -0.82 16 28 H 0.06 -0.18 7.66 -51.93 -0.40 -0.58 16 29 H 0.06 -0.20 7.66 -51.93 -0.40 -0.60 16 30 H 0.14 -0.07 6.30 -52.49 -0.33 -0.40 16 31 H 0.10 -0.24 7.65 -51.93 -0.40 -0.64 16 32 H 0.09 -0.18 7.67 -51.93 -0.40 -0.58 16 33 H 0.40 -1.48 6.87 -40.82 -0.28 -1.76 16 34 H 0.07 0.01 8.14 -51.93 -0.42 -0.41 16 35 H 0.07 0.20 8.14 -51.93 -0.42 -0.22 16 36 H 0.06 -0.02 7.60 -51.93 -0.39 -0.41 16 37 H 0.07 0.12 7.82 -51.93 -0.41 -0.28 16 38 H 0.05 -0.10 8.14 -51.93 -0.42 -0.52 16 39 H 0.04 -0.10 8.14 -51.93 -0.42 -0.52 16 40 H 0.38 -1.39 9.12 45.56 0.42 -0.98 16 41 H 0.07 -0.24 8.14 -51.93 -0.42 -0.66 16 42 H 0.06 -0.25 6.51 -51.93 -0.34 -0.58 16 43 H 0.08 -0.21 8.14 -51.93 -0.42 -0.63 16 44 H 0.07 -0.21 8.14 -51.92 -0.42 -0.64 16 45 H 0.12 0.39 7.82 -51.93 -0.41 -0.01 16 46 H 0.37 0.29 8.70 45.56 0.40 0.69 16 47 H -0.26 -0.35 6.68 56.52 0.38 0.03 16 48 H -0.26 -0.99 7.11 56.52 0.40 -0.59 16 49 H 0.14 -0.17 4.85 -52.49 -0.25 -0.42 16 50 H 0.13 -0.25 6.29 -52.49 -0.33 -0.58 16 LS Contribution 396.74 15.07 5.98 5.98 Total: 0.00 -10.85 396.74 -9.72 -20.57 By element: Atomic # 1 Polarization: -5.88 SS G_CDS: -6.94 Total: -12.82 kcal Atomic # 6 Polarization: 1.38 SS G_CDS: -1.68 Total: -0.30 kcal Atomic # 7 Polarization: 0.72 SS G_CDS: -0.23 Total: 0.49 kcal Atomic # 8 Polarization: -7.34 SS G_CDS: -1.71 Total: -9.04 kcal Atomic # 14 Polarization: 0.27 SS G_CDS: -5.14 Total: -4.87 kcal Total LS contribution 5.98 Total: 5.98 kcal Total: -10.85 -9.72 -20.57 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_7207534_4974312.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -143.875 kcal (2) G-P(sol) polarization free energy of solvation -10.845 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -154.720 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.722 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -20.567 kcal (6) G-S(sol) free energy of system = (1) + (5) -164.441 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.12 seconds