Wall clock time and date at job start Mon Mar 8 2021 02:34:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.35995 * 116.99898 * 2 1 4 4 C 1.39154 * 120.07374 * 180.02562 * 3 2 1 5 5 O 1.35992 * 120.07151 * 359.96166 * 4 3 2 6 6 C 1.42900 * 116.99608 * 179.97438 * 5 4 3 7 7 C 1.50700 * 109.46679 * 179.97438 * 6 5 4 8 8 O 1.21280 * 120.00643 * 0.02562 * 7 6 5 9 9 N 1.34780 * 120.00003 * 180.02562 * 7 6 5 10 10 C 1.46501 * 120.00485 * 180.02562 * 9 7 6 11 11 H 1.09000 * 109.46498 * 34.99971 * 10 9 7 12 12 C 1.52994 * 109.47103 * 154.99852 * 10 9 7 13 13 C 1.53000 * 109.47264 * 60.00416 * 12 10 9 14 14 C 1.53007 * 109.46974 * 59.99295 * 13 12 10 15 15 H 1.08998 * 109.46679 * 60.00381 * 14 13 12 16 16 C 1.53000 * 109.46974 * 179.97438 * 14 13 12 17 17 O 1.42896 * 109.47336 * 185.00329 * 16 14 13 18 18 C 1.52994 * 109.47196 * 300.00269 * 14 13 12 19 19 C 1.52998 * 109.47096 * 275.00487 * 10 9 7 20 20 C 1.38566 * 119.85128 * 179.97438 * 4 3 2 21 21 C 1.38236 * 120.00196 * 0.02562 * 20 4 3 22 22 C 1.38249 * 120.14650 * 359.97438 * 21 20 4 23 23 C 1.50709 * 119.92850 * 180.02562 * 22 21 20 24 24 O 1.42895 * 109.47047 * 244.98182 * 23 22 21 25 25 Si 1.86303 * 109.46812 * 4.98011 * 23 22 21 26 26 C 1.38243 * 120.14768 * 0.02562 * 22 21 20 27 27 H 1.09007 * 109.47188 * 299.99161 * 1 2 3 28 28 H 1.08994 * 109.47700 * 59.99882 * 1 2 3 29 29 H 1.09007 * 109.46974 * 179.97438 * 1 2 3 30 30 H 1.08991 * 109.47385 * 299.99975 * 6 5 4 31 31 H 1.09002 * 109.47350 * 60.00319 * 6 5 4 32 32 H 0.97006 * 120.00046 * 0.02562 * 9 7 6 33 33 H 1.09008 * 109.46834 * 179.97438 * 12 10 9 34 34 H 1.09000 * 109.47754 * 300.00144 * 12 10 9 35 35 H 1.08996 * 109.47382 * 179.97438 * 13 12 10 36 36 H 1.08998 * 109.47106 * 299.99937 * 13 12 10 37 37 H 1.09002 * 109.47235 * 305.00436 * 16 14 13 38 38 H 1.09000 * 109.47088 * 64.99892 * 16 14 13 39 39 H 0.96695 * 114.00642 * 180.02562 * 17 16 14 40 40 H 1.09002 * 109.46521 * 179.97438 * 18 14 13 41 41 H 1.08998 * 109.47399 * 299.99672 * 18 14 13 42 42 H 1.08996 * 109.47224 * 59.99584 * 19 10 9 43 43 H 1.08998 * 109.47329 * 179.97438 * 19 10 9 44 44 H 1.08003 * 119.99820 * 180.02562 * 20 4 3 45 45 H 1.07996 * 119.92700 * 179.97438 * 21 20 4 46 46 H 1.08996 * 109.46972 * 124.97952 * 23 22 21 47 47 H 0.96697 * 113.99915 * 179.97438 * 24 23 22 48 48 H 1.48502 * 109.99833 * 299.99808 * 25 23 22 49 49 H 1.48502 * 110.00010 * 61.31966 * 25 23 22 50 50 H 1.08000 * 119.99728 * 180.26931 * 26 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0464 1.2117 0.0000 4 6 3.4359 1.2864 -0.0005 5 8 4.1795 0.1477 -0.0003 6 6 5.6003 0.3008 -0.0014 7 6 6.2518 -1.0580 -0.0003 8 8 5.5671 -2.0590 0.0008 9 7 7.5957 -1.1610 -0.0006 10 6 8.2292 -2.4820 -0.0001 11 1 7.6271 -3.1738 -0.5890 12 6 9.6283 -2.3768 -0.6101 13 6 10.4735 -1.4056 0.2166 14 6 10.5809 -1.9192 1.6539 15 1 11.0522 -2.9020 1.6542 16 6 11.4266 -0.9483 2.4804 17 8 11.6245 -1.4848 3.7900 18 6 9.1818 -2.0242 2.2638 19 6 8.3366 -2.9955 1.4371 20 6 4.0602 2.5235 -0.0011 21 6 3.3028 3.6799 -0.0005 22 6 1.9223 3.6057 0.0000 23 6 1.1014 4.8696 0.0000 24 8 0.3646 4.9590 1.2211 25 14 2.2307 6.3435 -0.1533 26 6 1.2931 2.3748 0.0005 27 1 -0.3634 0.5137 0.8901 28 1 -0.3634 0.5138 -0.8899 29 1 -0.3633 -1.0277 -0.0005 30 1 5.9058 0.8500 -0.8919 31 1 5.9072 0.8512 0.8880 32 1 8.1435 -0.3605 -0.0012 33 1 10.0998 -3.3597 -0.6093 34 1 9.5518 -2.0110 -1.6340 35 1 11.4704 -1.3311 -0.2178 36 1 10.0022 -0.4228 0.2162 37 1 12.3929 -0.8054 1.9965 38 1 10.9121 0.0097 2.5541 39 1 12.1533 -0.9206 4.3705 40 1 9.2584 -2.3905 3.2876 41 1 8.7105 -1.0414 2.2635 42 1 7.3398 -3.0704 1.8717 43 1 8.8076 -3.9785 1.4375 44 1 5.1385 2.5842 -0.0019 45 1 3.7906 4.6434 -0.0005 46 1 0.4092 4.8532 -0.8417 47 1 -0.1872 5.7500 1.2904 48 1 3.1795 6.3772 0.9886 49 1 2.9793 6.2786 -1.4341 50 1 0.2146 2.3197 -0.0034 There are 66 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 66 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_7207534_60476.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 02:34:56 Heat of formation + Delta-G solvation = -167.050565 kcal Electronic energy + Delta-G solvation = -31614.241276 eV Core-core repulsion = 27187.683175 eV Total energy + Delta-G solvation = -4426.558101 eV No. of doubly occupied orbitals = 66 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 352.181 amu Computer time = 1.32 seconds Orbital eigenvalues (eV) -41.96895 -41.36060 -39.96066 -39.17718 -38.79057 -37.48262 -37.03916 -34.91049 -32.43346 -31.91356 -31.80054 -31.51647 -29.36792 -28.49383 -26.42587 -26.09784 -23.89463 -23.67769 -22.70216 -22.18802 -21.94428 -20.30669 -19.81011 -18.70420 -18.48188 -18.24138 -18.18284 -17.68159 -17.57879 -16.92232 -16.75952 -16.40345 -16.31309 -15.97545 -15.77353 -15.73800 -15.53193 -15.21761 -14.96399 -14.73250 -14.44209 -14.22099 -14.06779 -13.96393 -13.69128 -13.60308 -13.45553 -13.23882 -13.07929 -12.83140 -12.47269 -12.45345 -12.33199 -12.26821 -12.17027 -12.10271 -11.85334 -11.59741 -11.35747 -11.14416 -11.05354 -10.83098 -10.30986 -10.19446 -9.92050 -9.04903 -4.90370 0.02600 0.09410 1.31755 1.38666 1.41038 1.68422 1.98609 2.20580 2.38604 2.49329 3.29009 3.35994 3.43529 3.61033 3.65611 3.68652 3.71966 3.84044 3.87245 3.89329 3.98621 4.01265 4.09029 4.14495 4.24983 4.25353 4.28196 4.38294 4.39495 4.45321 4.45884 4.46770 4.47919 4.62933 4.63584 4.70988 4.72787 4.84146 4.91754 4.98077 5.01544 5.06400 5.12149 5.19125 5.21745 5.36184 5.38782 5.42027 5.45930 5.84990 6.33389 6.43726 6.88603 6.91590 7.08159 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.018 3.982 2 O -0.332 6.332 3 C 0.084 3.916 4 C 0.085 3.915 5 O -0.309 6.309 6 C 0.033 3.967 7 C 0.513 3.487 8 O -0.570 6.570 9 N -0.701 5.701 10 C 0.148 3.852 11 H 0.068 0.932 12 C -0.118 4.118 13 C -0.109 4.109 14 C -0.088 4.088 15 H 0.067 0.933 16 C 0.076 3.924 17 O -0.599 6.599 18 C -0.101 4.101 19 C -0.130 4.130 20 C -0.161 4.161 21 C -0.133 4.133 22 C -0.085 4.085 23 C -0.081 4.081 24 O -0.565 6.565 25 Si 0.778 3.222 26 C -0.147 4.147 27 H 0.064 0.936 28 H 0.069 0.931 29 H 0.113 0.887 30 H 0.126 0.874 31 H 0.121 0.879 32 H 0.417 0.583 33 H 0.085 0.915 34 H 0.085 0.915 35 H 0.085 0.915 36 H 0.078 0.922 37 H 0.058 0.942 38 H 0.056 0.944 39 H 0.395 0.605 40 H 0.050 0.950 41 H 0.064 0.936 42 H 0.040 0.960 43 H 0.075 0.925 44 H 0.171 0.829 45 H 0.133 0.867 46 H 0.093 0.907 47 H 0.404 0.596 48 H -0.291 1.291 49 H -0.284 1.284 50 H 0.153 0.847 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.065 9.505 -2.389 10.269 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 O -0.246 6.246 3 C 0.038 3.962 4 C 0.039 3.961 5 O -0.223 6.223 6 C -0.045 4.045 7 C 0.299 3.701 8 O -0.448 6.448 9 N -0.356 5.356 10 C 0.044 3.956 11 H 0.086 0.914 12 C -0.156 4.156 13 C -0.147 4.147 14 C -0.106 4.106 15 H 0.086 0.914 16 C -0.002 4.002 17 O -0.407 6.407 18 C -0.139 4.139 19 C -0.169 4.169 20 C -0.179 4.179 21 C -0.151 4.151 22 C -0.085 4.085 23 C -0.190 4.190 24 O -0.375 6.375 25 Si 0.683 3.317 26 C -0.166 4.166 27 H 0.083 0.917 28 H 0.088 0.912 29 H 0.132 0.868 30 H 0.144 0.856 31 H 0.139 0.861 32 H 0.256 0.744 33 H 0.103 0.897 34 H 0.104 0.896 35 H 0.103 0.897 36 H 0.097 0.903 37 H 0.076 0.924 38 H 0.074 0.926 39 H 0.244 0.756 40 H 0.069 0.931 41 H 0.083 0.917 42 H 0.059 0.941 43 H 0.093 0.907 44 H 0.189 0.811 45 H 0.150 0.850 46 H 0.111 0.889 47 H 0.255 0.745 48 H -0.219 1.219 49 H -0.211 1.211 50 H 0.171 0.829 Dipole moment (debyes) X Y Z Total from point charges 3.344 7.622 -2.610 8.722 hybrid contribution 0.201 -0.058 0.408 0.459 sum 3.545 7.564 -2.201 8.639 Atomic orbital electron populations 1.23351 0.76446 1.05478 1.02348 1.86201 1.23362 1.26130 1.88883 1.18651 0.89736 0.85864 1.01965 1.18505 0.88464 0.86229 1.02866 1.86229 1.18162 1.28639 1.89255 1.22783 0.79432 0.95648 1.06654 1.20458 0.83213 0.90562 0.75852 1.90767 1.64096 1.39972 1.49955 1.45801 1.04828 1.10422 1.74554 1.20953 0.94606 0.83882 0.96189 0.91378 1.21782 0.92210 1.01894 0.99734 1.21519 1.01315 0.99034 0.92809 1.21182 0.94878 0.99686 0.94884 0.91427 1.22329 0.98921 0.95953 0.82961 1.86445 1.77071 1.51835 1.25364 1.21396 0.94747 0.99326 0.98409 1.21892 0.99501 0.99949 0.95526 1.21257 1.01991 0.89506 1.05154 1.20823 0.93299 0.98224 1.02728 1.19492 0.93427 0.94503 1.01120 1.24891 1.01592 1.02080 0.90468 1.86448 1.63836 1.50232 1.36997 0.94280 0.78683 0.82272 0.76450 1.21083 1.00977 0.90034 1.04485 0.91710 0.91244 0.86829 0.85637 0.86122 0.74440 0.89669 0.89617 0.89662 0.90327 0.92396 0.92619 0.75560 0.93121 0.91737 0.94069 0.90660 0.81140 0.85006 0.88892 0.74504 1.21916 1.21139 0.82906 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.06 9.81 113.37 1.11 1.17 16 2 O -0.33 -4.31 10.28 -79.63 -0.82 -5.12 16 3 C 0.08 0.94 6.70 22.57 0.15 1.09 16 4 C 0.08 0.83 6.70 22.57 0.15 0.98 16 5 O -0.31 -3.71 9.45 -67.05 -0.63 -4.35 16 6 C 0.03 0.04 5.22 71.24 0.37 0.41 16 7 C 0.51 3.27 7.87 87.66 0.69 3.96 16 8 O -0.57 -10.49 16.16 16.01 0.26 -10.23 16 9 N -0.70 1.02 4.23 -442.54 -1.87 -0.86 16 10 C 0.15 0.09 2.78 44.99 0.13 0.21 16 11 H 0.07 0.39 7.58 -2.39 -0.02 0.38 16 12 C -0.12 0.64 5.61 30.59 0.17 0.82 16 13 C -0.11 0.84 5.03 30.60 0.15 0.99 16 14 C -0.09 0.25 2.43 -10.79 -0.03 0.22 16 15 H 0.07 0.00 8.14 -2.39 -0.02 -0.02 16 16 C 0.08 -0.28 6.43 71.98 0.46 0.18 16 17 O -0.60 -0.37 13.20 -148.98 -1.97 -2.34 16 18 C -0.10 -0.08 4.94 30.59 0.15 0.07 16 19 C -0.13 -0.41 5.60 30.59 0.17 -0.24 16 20 C -0.16 -0.59 9.04 22.35 0.20 -0.39 16 21 C -0.13 -0.62 8.66 22.27 0.19 -0.43 16 22 C -0.08 -0.46 5.38 -19.86 -0.11 -0.57 16 23 C -0.08 0.08 2.79 71.24 0.20 0.27 16 24 O -0.57 0.31 12.81 -148.98 -1.91 -1.60 16 25 Si 0.78 -2.77 29.84 68.60 2.05 -0.72 16 26 C -0.15 -1.03 8.67 22.35 0.19 -0.84 16 27 H 0.06 0.08 7.67 -2.38 -0.02 0.06 16 28 H 0.07 0.00 7.66 -2.39 -0.02 -0.02 16 29 H 0.11 0.04 8.14 -2.38 -0.02 0.02 16 30 H 0.13 -0.74 7.66 -2.39 -0.02 -0.75 16 31 H 0.12 -0.60 7.66 -2.39 -0.02 -0.62 16 32 H 0.42 -3.68 6.87 -92.70 -0.64 -4.31 16 33 H 0.08 -0.44 8.14 -2.38 -0.02 -0.46 16 34 H 0.09 -0.60 8.14 -2.39 -0.02 -0.62 16 35 H 0.08 -0.79 8.14 -2.39 -0.02 -0.81 16 36 H 0.08 -0.85 6.51 -2.39 -0.02 -0.87 16 37 H 0.06 -0.35 8.14 -2.39 -0.02 -0.37 16 38 H 0.06 -0.34 8.14 -2.39 -0.02 -0.36 16 39 H 0.39 -2.96 9.12 -74.06 -0.68 -3.63 16 40 H 0.05 0.26 7.82 -2.39 -0.02 0.25 16 41 H 0.06 -0.04 7.60 -2.39 -0.02 -0.06 16 42 H 0.04 0.37 8.14 -2.39 -0.02 0.35 16 43 H 0.07 0.20 8.14 -2.39 -0.02 0.18 16 44 H 0.17 -0.75 6.30 -2.91 -0.02 -0.77 16 45 H 0.13 0.28 4.85 -2.91 -0.01 0.27 16 46 H 0.09 -0.46 7.96 -2.39 -0.02 -0.48 16 47 H 0.40 -4.58 8.74 -74.06 -0.65 -5.22 16 48 H -0.29 -0.94 7.05 99.48 0.70 -0.24 16 49 H -0.28 -0.38 7.11 99.48 0.71 0.33 16 50 H 0.15 0.51 6.30 -2.91 -0.02 0.49 16 Total: 0.00 -33.13 397.39 -1.47 -34.59 By element: Atomic # 1 Polarization: -16.36 SS G_CDS: -0.94 Total: -17.30 kcal Atomic # 6 Polarization: 3.55 SS G_CDS: 4.37 Total: 7.92 kcal Atomic # 7 Polarization: 1.02 SS G_CDS: -1.87 Total: -0.86 kcal Atomic # 8 Polarization: -18.57 SS G_CDS: -5.07 Total: -23.64 kcal Atomic # 14 Polarization: -2.77 SS G_CDS: 2.05 Total: -0.72 kcal Total: -33.13 -1.47 -34.59 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_7207534_60476.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -132.458 kcal (2) G-P(sol) polarization free energy of solvation -33.126 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -165.584 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.466 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.593 kcal (6) G-S(sol) free energy of system = (1) + (5) -167.051 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.32 seconds