Wall clock time and date at job start Mon Mar 8 2021 02:35:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42898 * 1 3 3 Si 1.86293 * 109.47014 * 2 1 4 4 C 1.50700 * 109.47255 * 239.99737 * 2 1 3 5 5 C 1.32774 * 124.71098 * 300.27826 * 4 2 1 6 6 C 1.44426 * 113.08201 * 180.17732 * 5 4 2 7 7 C 1.47184 * 123.46415 * 179.80442 * 6 5 4 8 8 O 1.21646 * 119.99805 * 359.72957 * 7 6 5 9 9 N 1.34773 * 120.00261 * 179.72915 * 7 6 5 10 10 C 1.46500 * 120.00050 * 180.02562 * 9 7 6 11 11 H 1.09004 * 109.47042 * 34.99926 * 10 9 7 12 12 C 1.52996 * 109.47368 * 155.00010 * 10 9 7 13 13 C 1.53000 * 109.47328 * 59.99845 * 12 10 9 14 14 C 1.52997 * 109.47060 * 60.00126 * 13 12 10 15 15 H 1.08998 * 109.47533 * 59.99948 * 14 13 12 16 16 C 1.52992 * 109.47482 * 180.02562 * 14 13 12 17 17 O 1.42905 * 109.47641 * 184.99974 * 16 14 13 18 18 C 1.53006 * 109.47127 * 300.00449 * 14 13 12 19 19 C 1.52997 * 109.47164 * 59.99836 * 18 14 13 20 20 C 1.36014 * 113.07744 * 359.53846 * 6 5 4 21 21 S 1.70447 * 110.81487 * 0.24478 * 20 6 5 22 22 H 0.96694 * 114.00449 * 60.00207 * 1 2 3 23 23 H 1.09001 * 109.47407 * 119.99949 * 2 1 3 24 24 H 1.48497 * 109.99945 * 298.67783 * 3 2 1 25 25 H 1.48501 * 110.00427 * 60.00001 * 3 2 1 26 26 H 1.07993 * 123.46274 * 359.97438 * 5 4 2 27 27 H 0.96994 * 120.00306 * 0.02562 * 9 7 6 28 28 H 1.09004 * 109.47368 * 300.00056 * 12 10 9 29 29 H 1.09001 * 109.47372 * 180.02562 * 12 10 9 30 30 H 1.09002 * 109.47398 * 180.02562 * 13 12 10 31 31 H 1.09001 * 109.47194 * 300.00476 * 13 12 10 32 32 H 1.09001 * 109.47563 * 305.00337 * 16 14 13 33 33 H 1.09004 * 109.47313 * 64.99993 * 16 14 13 34 34 H 0.96695 * 114.00050 * 180.02562 * 17 16 14 35 35 H 1.09001 * 109.47002 * 299.99574 * 18 14 13 36 36 H 1.09000 * 109.47050 * 179.97438 * 18 14 13 37 37 H 1.09002 * 109.47045 * 180.02562 * 19 18 14 38 38 H 1.09001 * 109.47375 * 59.99966 * 19 18 14 39 39 H 1.08000 * 124.59031 * 180.28412 * 20 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4290 0.0000 0.0000 3 14 2.0499 1.7564 0.0000 4 6 1.9313 -0.7105 -1.2304 5 6 1.6645 -1.9749 -1.5353 6 6 2.2778 -2.4008 -2.7715 7 6 2.1355 -3.7581 -3.3227 8 8 1.4771 -4.5902 -2.7277 9 7 2.7345 -4.0791 -4.4865 10 6 2.5924 -5.4300 -5.0353 11 1 1.5966 -5.8113 -4.8088 12 6 2.7894 -5.3877 -6.5519 13 6 4.1870 -4.8525 -6.8700 14 6 5.2391 -5.7705 -6.2444 15 1 5.1334 -6.7756 -6.6527 16 6 6.6367 -5.2351 -6.5618 17 8 7.6197 -6.1528 -6.0784 18 6 5.0421 -5.8129 -4.7277 19 6 3.6445 -6.3480 -4.4098 20 6 2.9958 -1.4170 -3.3771 21 16 2.9440 0.0208 -2.4632 22 1 -0.3934 0.4416 -0.7650 23 1 1.7924 -0.5138 0.8900 24 1 1.5879 2.4584 -1.2243 25 1 1.5614 2.4679 1.2085 26 1 1.0545 -2.6197 -0.9202 27 1 3.2598 -3.4159 -4.9607 28 1 2.0399 -4.7337 -6.9977 29 1 2.6832 -6.3927 -6.9603 30 1 4.3273 -4.8220 -7.9505 31 1 4.2929 -3.8475 -6.4616 32 1 6.7458 -5.1206 -7.6403 33 1 6.7738 -4.2678 -6.0783 34 1 8.5313 -5.8767 -6.2451 35 1 5.1479 -4.8078 -4.3194 36 1 5.7913 -6.4672 -4.2821 37 1 3.5039 -6.3778 -3.3293 38 1 3.5386 -7.3531 -4.8181 39 1 3.5263 -1.5313 -4.3109 There are 52 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 52 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_7207534_6894386.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 02:35:16 Heat of formation + Delta-G solvation = -98.227587 kcal Electronic energy + Delta-G solvation = -22218.123220 eV Core-core repulsion = 18832.141376 eV Total energy + Delta-G solvation = -3385.981844 eV No. of doubly occupied orbitals = 52 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 298.107 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -41.49335 -39.78825 -38.80235 -37.50418 -37.13533 -34.86857 -32.35210 -31.81598 -30.97517 -26.99972 -26.65181 -25.43534 -23.68836 -22.45753 -22.05479 -20.70330 -20.22152 -19.01326 -18.20130 -18.16613 -17.73698 -16.74462 -16.65693 -16.37098 -16.05431 -15.87161 -15.57785 -15.10634 -15.05789 -14.70857 -14.48306 -14.07092 -13.92591 -13.70453 -13.62069 -13.39912 -13.20327 -13.03825 -12.64993 -12.44658 -12.42230 -12.15088 -11.86304 -11.56760 -11.32988 -11.11592 -11.04542 -10.79799 -10.77675 -10.19355 -9.97652 -9.44237 -5.05312 -0.34534 0.39104 0.69241 0.81493 1.22312 1.55872 1.90481 2.11149 2.26716 3.29248 3.31697 3.57964 3.65565 3.71729 3.87616 3.91449 3.99129 4.04697 4.25712 4.29930 4.41337 4.42607 4.48195 4.49428 4.49634 4.65900 4.70300 4.74007 4.75773 4.98080 5.01151 5.04631 5.08848 5.13849 5.17476 5.22122 5.39378 5.42654 5.50206 6.39861 6.46865 6.92024 7.15698 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.545 6.545 2 C -0.048 4.048 3 Si 0.732 3.268 4 C -0.246 4.246 5 C -0.077 4.077 6 C -0.183 4.183 7 C 0.573 3.427 8 O -0.586 6.586 9 N -0.701 5.701 10 C 0.147 3.853 11 H 0.068 0.932 12 C -0.120 4.120 13 C -0.109 4.109 14 C -0.087 4.087 15 H 0.068 0.932 16 C 0.076 3.924 17 O -0.598 6.598 18 C -0.100 4.100 19 C -0.129 4.129 20 C -0.191 4.191 21 S 0.255 5.745 22 H 0.388 0.612 23 H 0.128 0.872 24 H -0.250 1.250 25 H -0.276 1.276 26 H 0.130 0.870 27 H 0.411 0.589 28 H 0.083 0.917 29 H 0.085 0.915 30 H 0.085 0.915 31 H 0.076 0.924 32 H 0.058 0.942 33 H 0.056 0.944 34 H 0.395 0.605 35 H 0.062 0.938 36 H 0.051 0.949 37 H 0.041 0.959 38 H 0.075 0.925 39 H 0.203 0.797 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.201 6.005 -6.213 10.635 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.353 6.353 2 C -0.159 4.159 3 Si 0.632 3.368 4 C -0.363 4.363 5 C -0.107 4.107 6 C -0.201 4.201 7 C 0.360 3.640 8 O -0.467 6.467 9 N -0.354 5.354 10 C 0.042 3.958 11 H 0.086 0.914 12 C -0.158 4.158 13 C -0.147 4.147 14 C -0.106 4.106 15 H 0.086 0.914 16 C -0.001 4.001 17 O -0.407 6.407 18 C -0.138 4.138 19 C -0.168 4.168 20 C -0.330 4.330 21 S 0.522 5.478 22 H 0.238 0.762 23 H 0.146 0.854 24 H -0.175 1.175 25 H -0.202 1.202 26 H 0.147 0.853 27 H 0.250 0.750 28 H 0.101 0.899 29 H 0.104 0.896 30 H 0.104 0.896 31 H 0.094 0.906 32 H 0.076 0.924 33 H 0.075 0.925 34 H 0.244 0.756 35 H 0.081 0.919 36 H 0.070 0.930 37 H 0.060 0.940 38 H 0.093 0.907 39 H 0.220 0.780 Dipole moment (debyes) X Y Z Total from point charges 5.712 7.048 -5.291 10.502 hybrid contribution -1.212 -1.599 -0.292 2.027 sum 4.500 5.449 -5.583 9.006 Atomic orbital electron populations 1.86609 1.18212 1.80408 1.50091 1.24761 0.83296 1.11494 0.96302 0.94455 0.90250 0.72023 0.80040 1.24841 1.08690 0.98728 1.03999 1.20966 0.99203 0.95061 0.95465 1.20119 1.06604 0.94752 0.98595 1.17954 0.78339 0.86777 0.80881 1.90791 1.42886 1.52067 1.60972 1.45819 1.52518 1.14411 1.22655 1.20954 0.98769 0.81686 0.94364 0.91406 1.21788 0.98045 1.03733 0.92194 1.21511 0.92605 0.98752 1.01788 1.21175 0.93598 1.00425 0.95407 0.91392 1.22321 0.87830 0.91829 0.98144 1.86447 1.19927 1.50447 1.83839 1.21386 0.95339 1.01120 0.95941 1.21885 0.95465 0.99507 0.99902 1.26165 1.02743 0.98232 1.05826 1.82898 1.44575 1.09674 1.10670 0.76215 0.85398 1.17469 1.20215 0.85252 0.75038 0.89862 0.89601 0.89607 0.90564 0.92411 0.92544 0.75556 0.91896 0.93010 0.93987 0.90653 0.77986 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.54 -1.82 12.85 -148.98 -1.91 -3.74 16 2 C -0.05 0.02 2.95 71.24 0.21 0.23 16 3 Si 0.73 -2.63 30.91 68.60 2.12 -0.51 16 4 C -0.25 -0.04 5.69 24.51 0.14 0.10 16 5 C -0.08 -0.42 9.91 22.67 0.22 -0.20 16 6 C -0.18 -0.60 5.98 -19.87 -0.12 -0.71 16 7 C 0.57 4.28 7.76 86.59 0.67 4.95 16 8 O -0.59 -10.13 16.46 -4.18 -0.07 -10.20 16 9 N -0.70 0.09 4.20 -446.02 -1.87 -1.79 16 10 C 0.15 0.13 2.78 44.99 0.13 0.26 16 11 H 0.07 0.40 7.58 -2.38 -0.02 0.38 16 12 C -0.12 0.62 5.61 30.59 0.17 0.79 16 13 C -0.11 0.84 5.03 30.59 0.15 0.99 16 14 C -0.09 0.28 2.43 -10.79 -0.03 0.25 16 15 H 0.07 -0.02 8.14 -2.39 -0.02 -0.04 16 16 C 0.08 -0.33 6.43 71.98 0.46 0.13 16 17 O -0.60 0.07 13.20 -148.98 -1.97 -1.89 16 18 C -0.10 -0.05 4.94 30.60 0.15 0.10 16 19 C -0.13 -0.38 5.60 30.59 0.17 -0.21 16 20 C -0.19 0.89 10.38 67.30 0.70 1.59 16 21 S 0.26 -1.43 20.18 -56.49 -1.14 -2.57 16 22 H 0.39 -1.14 8.70 -74.06 -0.64 -1.78 16 23 H 0.13 -0.15 7.96 -2.39 -0.02 -0.17 16 24 H -0.25 0.44 7.11 99.48 0.71 1.14 16 25 H -0.28 -0.96 7.11 99.48 0.71 -0.26 16 26 H 0.13 1.29 8.06 -2.91 -0.02 1.27 16 27 H 0.41 -2.81 5.36 -92.71 -0.50 -3.30 16 28 H 0.08 -0.54 8.14 -2.39 -0.02 -0.56 16 29 H 0.09 -0.45 8.14 -2.39 -0.02 -0.47 16 30 H 0.09 -0.81 8.14 -2.39 -0.02 -0.83 16 31 H 0.08 -0.81 6.51 -2.39 -0.02 -0.83 16 32 H 0.06 -0.39 8.14 -2.39 -0.02 -0.41 16 33 H 0.06 -0.39 8.14 -2.39 -0.02 -0.41 16 34 H 0.39 -3.27 9.12 -74.06 -0.68 -3.94 16 35 H 0.06 -0.03 7.60 -2.39 -0.02 -0.05 16 36 H 0.05 0.24 7.82 -2.39 -0.02 0.22 16 37 H 0.04 0.36 8.14 -2.39 -0.02 0.34 16 38 H 0.07 0.17 8.14 -2.39 -0.02 0.15 16 39 H 0.20 -2.48 7.01 -2.91 -0.02 -2.50 16 Total: 0.00 -21.98 328.33 -2.50 -24.47 By element: Atomic # 1 Polarization: -11.35 SS G_CDS: -0.69 Total: -12.04 kcal Atomic # 6 Polarization: 5.23 SS G_CDS: 3.03 Total: 8.26 kcal Atomic # 7 Polarization: 0.09 SS G_CDS: -1.87 Total: -1.79 kcal Atomic # 8 Polarization: -11.88 SS G_CDS: -3.95 Total: -15.83 kcal Atomic # 14 Polarization: -2.63 SS G_CDS: 2.12 Total: -0.51 kcal Atomic # 16 Polarization: -1.43 SS G_CDS: -1.14 Total: -2.57 kcal Total: -21.98 -2.50 -24.47 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_7207534_6894386.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -73.753 kcal (2) G-P(sol) polarization free energy of solvation -21.976 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -95.729 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.499 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -24.474 kcal (6) G-S(sol) free energy of system = (1) + (5) -98.228 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds