Wall clock time and date at job start Sun Mar 7 2021 20:35:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.35648 * 116.99683 * 2 1 4 4 C 1.40142 * 120.14361 * 179.97438 * 3 2 1 5 5 C 1.47533 * 120.19752 * 0.02562 * 4 3 2 6 6 O 1.21593 * 119.99375 * 359.97438 * 5 4 3 7 7 N 1.34771 * 120.00441 * 179.97438 * 5 4 3 8 8 C 1.46496 * 119.99842 * 179.97438 * 7 5 4 9 9 H 1.08996 * 109.47437 * 324.99968 * 8 7 5 10 10 C 1.52998 * 109.47280 * 85.00270 * 8 7 5 11 11 C 1.53001 * 109.47396 * 179.97438 * 10 8 7 12 12 C 1.53002 * 109.47051 * 299.99893 * 11 10 8 13 13 H 1.09005 * 109.46940 * 299.99730 * 12 11 10 14 14 C 1.53001 * 109.47051 * 179.97438 * 12 11 10 15 15 O 1.42898 * 109.47154 * 64.99701 * 14 12 11 16 16 C 1.52998 * 109.46934 * 59.99824 * 12 11 10 17 17 C 1.53002 * 109.46817 * 204.99584 * 8 7 5 18 18 C 1.39713 * 119.61512 * 179.97438 * 4 3 2 19 19 C 1.37793 * 119.90706 * 0.02562 * 18 4 3 20 20 C 1.50695 * 119.85002 * 180.02562 * 19 18 4 21 21 O 1.42898 * 109.46955 * 299.99893 * 20 19 18 22 22 Si 1.86300 * 109.47389 * 179.97438 * 20 19 18 23 23 C 1.38550 * 120.30134 * 0.27292 * 19 18 4 24 24 C 1.38055 * 120.38447 * 359.44924 * 23 19 18 25 25 H 1.08996 * 109.47476 * 300.00267 * 1 2 3 26 26 H 1.09003 * 109.46789 * 60.00165 * 1 2 3 27 27 H 1.08999 * 109.47550 * 179.97438 * 1 2 3 28 28 H 0.97002 * 119.99859 * 359.97438 * 7 5 4 29 29 H 1.09003 * 109.46820 * 299.99981 * 10 8 7 30 30 H 1.09005 * 109.47384 * 59.99486 * 10 8 7 31 31 H 1.09006 * 109.46983 * 179.97438 * 11 10 8 32 32 H 1.08996 * 109.47133 * 59.99813 * 11 10 8 33 33 H 1.08996 * 109.47067 * 184.99880 * 14 12 11 34 34 H 1.09004 * 109.47031 * 304.99956 * 14 12 11 35 35 H 0.96703 * 114.00301 * 179.97438 * 15 14 12 36 36 H 1.09003 * 109.46400 * 180.02562 * 16 12 11 37 37 H 1.08996 * 109.47132 * 60.00152 * 16 12 11 38 38 H 1.08996 * 109.47431 * 300.00388 * 17 8 7 39 39 H 1.09006 * 109.47105 * 60.00508 * 17 8 7 40 40 H 1.07996 * 120.04908 * 179.97438 * 18 4 3 41 41 H 1.09001 * 109.47545 * 59.99436 * 20 19 18 42 42 H 0.96700 * 113.99995 * 299.99800 * 21 20 19 43 43 H 1.48498 * 109.99998 * 179.97438 * 22 20 19 44 44 H 1.48498 * 109.99919 * 301.31690 * 22 20 19 45 45 H 1.07991 * 119.80571 * 179.72823 * 23 19 18 46 46 H 1.08004 * 119.95432 * 180.27189 * 24 23 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0448 1.2087 0.0000 4 6 3.4441 1.2856 0.0005 5 6 4.2550 0.0531 0.0005 6 8 3.7094 -1.0335 0.0005 7 7 5.6005 0.1317 0.0005 8 6 6.4056 -1.0922 0.0011 9 1 5.9020 -1.8582 0.5909 10 6 6.5809 -1.5880 -1.4356 11 6 7.4223 -2.8659 -1.4351 12 6 8.7948 -2.5726 -0.8258 13 1 9.2980 -1.8065 -1.4157 14 6 9.6360 -3.8506 -0.8247 15 8 9.8978 -4.2497 -2.1716 16 6 8.6194 -2.0768 0.6110 17 6 7.7781 -0.7994 0.6106 18 6 4.0668 2.5363 0.0000 19 6 3.3038 3.6837 -0.0005 20 6 3.9768 5.0320 -0.0017 21 8 4.7926 5.1581 1.1647 22 14 2.6826 6.3721 -0.0030 23 6 1.9206 3.6034 0.0052 24 6 1.2925 2.3740 0.0000 25 1 -0.3634 0.5138 0.8899 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3634 -1.0276 -0.0005 28 1 6.0357 0.9986 0.0002 29 1 5.6031 -1.7966 -1.8699 30 1 7.0845 -0.8221 -2.0255 31 1 7.5469 -3.2194 -2.4588 32 1 6.9191 -3.6320 -0.8453 33 1 10.5791 -3.6644 -0.3111 34 1 9.0923 -4.6430 -0.3101 35 1 10.4281 -5.0548 -2.2473 36 1 9.5972 -1.8675 1.0449 37 1 8.1162 -2.8429 1.2008 38 1 8.2816 -0.0335 0.0208 39 1 7.6532 -0.4462 1.6342 40 1 5.1446 2.6037 0.0008 41 1 4.5986 5.1270 -0.8919 42 1 4.3044 5.0836 1.9961 43 1 3.3336 7.7068 -0.0035 44 1 1.8081 6.2325 -1.1950 45 1 1.3304 4.5077 0.0091 46 1 0.2138 2.3195 0.0000 There are 60 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 60 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_7207542_12496546.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 20:35:51 Heat of formation + Delta-G solvation = -137.470286 kcal Electronic energy + Delta-G solvation = -27761.498095 eV Core-core repulsion = 23810.442502 eV Total energy + Delta-G solvation = -3951.055593 eV No. of doubly occupied orbitals = 60 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 322.166 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -41.83755 -40.67087 -39.38237 -39.18191 -37.42937 -37.09606 -35.25556 -32.96075 -31.85838 -31.81446 -30.97257 -28.53377 -26.50177 -26.15030 -24.89801 -23.80007 -22.83890 -21.95467 -21.49607 -20.82538 -19.51372 -18.42519 -18.21915 -18.03690 -17.45150 -16.88760 -16.77888 -16.36989 -16.12752 -15.93071 -15.85279 -15.78608 -15.61875 -15.05419 -14.81746 -14.62495 -14.52690 -14.45683 -13.96994 -13.65520 -13.59494 -13.36431 -13.18606 -13.12355 -12.96698 -12.44960 -12.27055 -12.14716 -12.10005 -12.05364 -11.78643 -11.60057 -11.45801 -11.31253 -10.95463 -10.82758 -10.39061 -10.28189 -10.02657 -9.29138 -4.97516 -0.27341 0.20790 1.34091 1.65150 1.77259 2.00036 2.07855 2.26259 2.67778 3.29567 3.48159 3.54202 3.60808 3.67292 3.75863 3.76524 3.91862 3.99088 4.01229 4.15384 4.27996 4.29297 4.33025 4.34878 4.39566 4.40544 4.47363 4.50760 4.55937 4.59904 4.66296 4.69996 4.73147 4.82075 4.90888 4.94212 5.04834 5.06399 5.11149 5.12241 5.19335 5.26852 5.35450 5.42470 5.50348 5.56051 6.29486 6.51685 6.81423 6.88708 7.21190 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.011 3.989 2 O -0.314 6.314 3 C 0.170 3.830 4 C -0.197 4.197 5 C 0.556 3.444 6 O -0.564 6.564 7 N -0.714 5.714 8 C 0.149 3.851 9 H 0.066 0.934 10 C -0.123 4.123 11 C -0.103 4.103 12 C -0.087 4.087 13 H 0.074 0.926 14 C 0.076 3.924 15 O -0.597 6.597 16 C -0.106 4.106 17 C -0.117 4.117 18 C -0.017 4.017 19 C -0.167 4.167 20 C -0.064 4.064 21 O -0.554 6.554 22 Si 0.772 3.228 23 C -0.043 4.043 24 C -0.212 4.212 25 H 0.076 0.924 26 H 0.071 0.929 27 H 0.106 0.894 28 H 0.410 0.590 29 H 0.040 0.960 30 H 0.070 0.930 31 H 0.058 0.942 32 H 0.056 0.944 33 H 0.060 0.940 34 H 0.050 0.950 35 H 0.395 0.605 36 H 0.088 0.912 37 H 0.067 0.933 38 H 0.082 0.918 39 H 0.082 0.918 40 H 0.149 0.851 41 H 0.112 0.888 42 H 0.396 0.604 43 H -0.302 1.302 44 H -0.284 1.284 45 H 0.158 0.842 46 H 0.163 0.837 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.354 3.494 3.826 5.194 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.083 4.083 2 O -0.226 6.226 3 C 0.122 3.878 4 C -0.201 4.201 5 C 0.344 3.656 6 O -0.444 6.444 7 N -0.367 5.367 8 C 0.045 3.955 9 H 0.085 0.915 10 C -0.162 4.162 11 C -0.141 4.141 12 C -0.106 4.106 13 H 0.092 0.908 14 C -0.001 4.001 15 O -0.405 6.405 16 C -0.144 4.144 17 C -0.155 4.155 18 C -0.035 4.035 19 C -0.168 4.168 20 C -0.174 4.174 21 O -0.362 6.362 22 Si 0.679 3.321 23 C -0.060 4.060 24 C -0.230 4.230 25 H 0.095 0.905 26 H 0.090 0.910 27 H 0.125 0.875 28 H 0.248 0.752 29 H 0.059 0.941 30 H 0.088 0.912 31 H 0.077 0.923 32 H 0.075 0.925 33 H 0.079 0.921 34 H 0.068 0.932 35 H 0.245 0.755 36 H 0.106 0.894 37 H 0.086 0.914 38 H 0.101 0.899 39 H 0.101 0.899 40 H 0.167 0.833 41 H 0.129 0.871 42 H 0.246 0.754 43 H -0.230 1.230 44 H -0.211 1.211 45 H 0.175 0.825 46 H 0.180 0.820 Dipole moment (debyes) X Y Z Total from point charges -0.880 3.777 2.855 4.816 hybrid contribution 0.493 -0.690 -0.514 0.991 sum -0.387 3.088 2.341 3.894 Atomic orbital electron populations 1.23447 0.76529 1.05442 1.02882 1.86339 1.23212 1.26442 1.86573 1.19423 0.91334 0.85579 0.91507 1.19433 0.91193 0.93998 1.15473 1.18337 0.82707 0.88677 0.75848 1.90806 1.72489 1.30339 1.50756 1.45909 1.05152 1.10488 1.75136 1.20971 0.91870 0.86444 0.96250 0.91543 1.21850 0.99290 0.98261 0.96771 1.21412 0.95003 0.96585 1.01103 1.21188 0.95016 0.96997 0.97366 0.90756 1.22303 0.98671 0.96139 0.83029 1.86433 1.76821 1.49469 1.27764 1.21442 1.01013 0.96910 0.95013 1.21743 0.92811 0.98960 1.02008 1.21096 1.00713 0.89182 0.92555 1.20261 0.93839 0.95995 1.06694 1.25054 1.02031 0.98975 0.91390 1.86469 1.38094 1.95310 1.16291 0.93816 0.77867 0.73958 0.86483 1.21282 0.93697 0.97876 0.93172 1.21475 1.01781 0.90882 1.08882 0.90538 0.91048 0.87530 0.75189 0.94122 0.91172 0.92324 0.92502 0.92144 0.93188 0.75514 0.89362 0.91384 0.89930 0.89935 0.83301 0.87107 0.75414 1.22989 1.21075 0.82495 0.81962 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 -0.01 9.81 113.37 1.11 1.11 16 2 O -0.31 -2.98 8.57 -68.71 -0.59 -3.57 16 3 C 0.17 1.04 6.70 22.84 0.15 1.20 16 4 C -0.20 -1.22 5.89 -20.01 -0.12 -1.34 16 5 C 0.56 5.74 7.73 86.70 0.67 6.41 16 6 O -0.56 -10.76 14.82 16.91 0.25 -10.51 16 7 N -0.71 -2.40 5.03 -445.72 -2.24 -4.65 16 8 C 0.15 0.52 2.45 44.99 0.11 0.63 16 9 H 0.07 0.56 7.58 -2.39 -0.02 0.55 16 10 C -0.12 -0.65 5.49 30.59 0.17 -0.48 16 11 C -0.10 -0.45 5.10 30.60 0.16 -0.29 16 12 C -0.09 -0.04 2.43 -10.79 -0.03 -0.06 16 13 H 0.07 0.12 8.14 -2.38 -0.02 0.10 16 14 C 0.08 -0.04 6.43 71.98 0.46 0.43 16 15 O -0.60 -1.54 13.20 -148.98 -1.97 -3.50 16 16 C -0.11 0.31 5.20 30.58 0.16 0.47 16 17 C -0.12 0.31 5.39 30.58 0.16 0.47 16 18 C -0.02 0.00 9.09 22.52 0.20 0.20 16 19 C -0.17 0.40 5.39 -19.90 -0.11 0.30 16 20 C -0.06 0.25 2.81 71.23 0.20 0.45 16 21 O -0.55 1.98 12.76 -148.98 -1.90 0.07 16 22 Si 0.77 -3.90 29.77 68.60 2.04 -1.85 16 23 C -0.04 0.16 8.66 22.30 0.19 0.35 16 24 C -0.21 0.20 9.03 22.34 0.20 0.40 16 25 H 0.08 -0.36 7.66 -2.39 -0.02 -0.38 16 26 H 0.07 -0.28 7.66 -2.39 -0.02 -0.30 16 27 H 0.11 -0.19 8.14 -2.39 -0.02 -0.21 16 28 H 0.41 -1.04 6.63 -92.71 -0.61 -1.65 16 29 H 0.04 0.45 8.14 -2.39 -0.02 0.43 16 30 H 0.07 0.26 8.14 -2.38 -0.02 0.24 16 31 H 0.06 0.42 7.82 -2.38 -0.02 0.40 16 32 H 0.06 0.31 8.14 -2.39 -0.02 0.29 16 33 H 0.06 -0.21 8.14 -2.39 -0.02 -0.23 16 34 H 0.05 -0.07 8.14 -2.38 -0.02 -0.09 16 35 H 0.40 -2.28 9.12 -74.06 -0.68 -2.95 16 36 H 0.09 -0.50 8.14 -2.39 -0.02 -0.52 16 37 H 0.07 -0.15 8.14 -2.39 -0.02 -0.17 16 38 H 0.08 -0.38 8.14 -2.39 -0.02 -0.40 16 39 H 0.08 -0.32 8.14 -2.38 -0.02 -0.34 16 40 H 0.15 -0.56 6.40 -2.91 -0.02 -0.58 16 41 H 0.11 -0.35 7.96 -2.39 -0.02 -0.37 16 42 H 0.40 -4.41 8.70 -74.06 -0.64 -5.05 16 43 H -0.30 -0.96 7.11 99.48 0.71 -0.25 16 44 H -0.28 0.15 7.11 99.48 0.71 0.86 16 45 H 0.16 -1.41 4.85 -2.92 -0.01 -1.42 16 46 H 0.16 -1.00 6.30 -2.91 -0.02 -1.02 16 Total: 0.00 -25.27 366.20 -1.58 -26.85 By element: Atomic # 1 Polarization: -12.20 SS G_CDS: -0.88 Total: -13.08 kcal Atomic # 6 Polarization: 6.53 SS G_CDS: 3.70 Total: 10.23 kcal Atomic # 7 Polarization: -2.40 SS G_CDS: -2.24 Total: -4.65 kcal Atomic # 8 Polarization: -13.30 SS G_CDS: -4.21 Total: -17.51 kcal Atomic # 14 Polarization: -3.90 SS G_CDS: 2.04 Total: -1.85 kcal Total: -25.27 -1.58 -26.85 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_7207542_12496546.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -110.621 kcal (2) G-P(sol) polarization free energy of solvation -25.273 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -135.894 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.576 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -26.850 kcal (6) G-S(sol) free energy of system = (1) + (5) -137.470 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds