Wall clock time and date at job start Sun Mar 7 2021 21:59:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42903 * 1 3 3 Si 1.86293 * 109.47041 * 2 1 4 4 C 1.50699 * 109.47152 * 239.99653 * 2 1 3 5 5 C 1.35448 * 126.06690 * 120.03029 * 4 2 1 6 6 N 1.35535 * 108.87202 * 179.97438 * 5 4 2 7 7 C 1.37646 * 108.64226 * 359.97438 * 6 5 4 8 8 C 1.46682 * 126.23301 * 180.02562 * 7 6 5 9 9 O 1.21689 * 120.00346 * 179.97438 * 8 7 6 10 10 N 1.34774 * 119.99875 * 359.97287 * 8 7 6 11 11 C 1.46501 * 120.00074 * 179.97438 * 10 8 7 12 12 H 1.08998 * 112.85093 * 334.67064 * 11 10 8 13 13 C 1.53787 * 113.61355 * 105.86819 * 11 10 8 14 14 C 1.54053 * 86.98391 * 89.16052 * 13 11 10 15 15 H 1.09002 * 113.61633 * 139.97482 * 14 13 11 16 16 O 1.42898 * 113.69282 * 270.87294 * 14 13 11 17 17 C 1.53783 * 87.07880 * 25.43252 * 14 13 11 18 18 C 1.37874 * 107.53776 * 359.73817 * 7 6 5 19 19 H 0.96700 * 114.00311 * 300.00531 * 1 2 3 20 20 H 1.09008 * 109.46477 * 119.99697 * 2 1 3 21 21 H 1.48506 * 109.99973 * 299.99283 * 3 2 1 22 22 H 1.48493 * 110.00375 * 61.31384 * 3 2 1 23 23 H 1.08005 * 125.56243 * 0.02562 * 5 4 2 24 24 H 0.96994 * 125.67911 * 180.02562 * 6 5 4 25 25 H 0.96999 * 119.99978 * 0.02562 * 10 8 7 26 26 H 1.08995 * 113.61533 * 203.66561 * 13 11 10 27 27 H 1.09000 * 113.61311 * 334.57043 * 13 11 10 28 28 H 0.96697 * 113.99900 * 277.53141 * 16 14 13 29 29 H 1.09000 * 113.61408 * 220.02135 * 17 14 13 30 30 H 1.09000 * 113.61344 * 89.11919 * 17 14 13 31 31 H 1.07994 * 126.45818 * 180.25595 * 18 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4290 0.0000 0.0000 3 14 2.0500 1.7564 0.0000 4 6 1.9314 -0.7105 -1.2304 5 6 2.7138 -0.1742 -2.1973 6 7 2.9568 -1.1186 -3.1386 7 6 2.3199 -2.2818 -2.7696 8 6 2.3278 -3.5473 -3.5111 9 8 1.7228 -4.5102 -3.0778 10 7 3.0050 -3.6438 -4.6723 11 6 3.0134 -4.9079 -5.4126 12 1 2.8429 -5.7740 -4.7732 13 6 2.1321 -4.8896 -6.6728 14 6 3.3700 -4.3752 -7.4320 15 1 3.4866 -4.8120 -8.4239 16 8 3.4913 -2.9514 -7.4349 17 6 4.2210 -5.0638 -6.3519 18 6 1.6786 -2.0425 -1.5727 19 1 -0.3934 0.4418 0.7650 20 1 1.7923 -0.5138 0.8901 21 1 1.5616 2.4678 -1.2086 22 1 1.5878 2.4586 1.2241 23 1 3.0843 0.8401 -2.2149 24 1 3.4912 -0.9956 -3.9386 25 1 3.4876 -2.8764 -5.0175 26 1 1.8048 -5.8793 -6.9911 27 1 1.3166 -4.1679 -6.6249 28 1 2.9584 -2.5127 -8.1121 29 1 5.0907 -4.4827 -6.0450 30 1 4.4637 -6.1011 -6.5827 31 1 1.0895 -2.7497 -1.0078 There are 43 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 43 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_7348514_10543058.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 21:59:24 Heat of formation + Delta-G solvation = -41.911492 kcal Electronic energy + Delta-G solvation = -16928.637635 eV Core-core repulsion = 13985.358680 eV Total energy + Delta-G solvation = -2943.278955 eV No. of doubly occupied orbitals = 43 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 239.099 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -42.50899 -41.09099 -39.42113 -37.77894 -36.10202 -34.13726 -32.57971 -30.73472 -26.82769 -26.79286 -25.57372 -23.78206 -21.32629 -20.76889 -20.67055 -19.69636 -18.46513 -18.21916 -17.30822 -16.96202 -16.48340 -16.02185 -15.86606 -15.32539 -15.08569 -14.83367 -14.71182 -14.45384 -13.98068 -13.66804 -13.55269 -13.36701 -12.73718 -12.57717 -12.35787 -11.95787 -11.52848 -11.34868 -10.72564 -10.44624 -10.24840 -9.92545 -9.30650 -4.85883 0.32200 1.34263 1.54607 1.69227 1.90091 2.05211 2.10168 2.20564 3.09240 3.44868 3.51787 3.65633 3.81518 3.83606 4.06034 4.12450 4.13456 4.26590 4.60844 4.69031 4.69989 4.77980 4.82126 4.86929 4.94327 4.99922 5.01106 5.45608 5.56477 5.71426 6.33016 6.49270 6.69097 6.80745 7.02746 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.565 6.565 2 C -0.064 4.064 3 Si 0.788 3.212 4 C -0.190 4.190 5 C 0.059 3.941 6 N -0.515 5.515 7 C -0.072 4.072 8 C 0.587 3.413 9 O -0.578 6.578 10 N -0.692 5.692 11 C 0.107 3.893 12 H 0.085 0.915 13 C -0.184 4.184 14 C 0.085 3.915 15 H 0.091 0.909 16 O -0.567 6.567 17 C -0.132 4.132 18 C -0.104 4.104 19 H 0.391 0.609 20 H 0.080 0.920 21 H -0.288 1.288 22 H -0.294 1.294 23 H 0.215 0.785 24 H 0.437 0.563 25 H 0.412 0.588 26 H 0.110 0.890 27 H 0.062 0.938 28 H 0.399 0.601 29 H 0.082 0.918 30 H 0.128 0.872 31 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.101 3.734 -4.134 8.261 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.375 6.375 2 C -0.172 4.172 3 Si 0.692 3.308 4 C -0.196 4.196 5 C -0.079 4.079 6 N -0.112 5.112 7 C -0.185 4.185 8 C 0.376 3.624 9 O -0.458 6.458 10 N -0.343 5.343 11 C 0.002 3.998 12 H 0.103 0.897 13 C -0.223 4.223 14 C 0.026 3.974 15 H 0.109 0.891 16 O -0.376 6.376 17 C -0.170 4.170 18 C -0.131 4.131 19 H 0.241 0.759 20 H 0.098 0.902 21 H -0.215 1.215 22 H -0.221 1.221 23 H 0.232 0.768 24 H 0.278 0.722 25 H 0.250 0.750 26 H 0.128 0.872 27 H 0.081 0.919 28 H 0.250 0.750 29 H 0.101 0.899 30 H 0.146 0.854 31 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges 6.069 3.388 -4.092 8.066 hybrid contribution -1.582 0.023 -0.154 1.589 sum 4.488 3.411 -4.246 7.057 Atomic orbital electron populations 1.86572 1.19516 1.80687 1.50675 1.24555 0.83180 1.12315 0.97113 0.94314 0.89328 0.70455 0.76715 1.18983 1.06525 0.94268 0.99805 1.22311 1.01001 0.95815 0.88820 1.41840 1.39810 1.08448 1.21136 1.20118 1.09901 0.88146 1.00335 1.17288 0.78417 0.86130 0.80518 1.90823 1.46100 1.39117 1.69764 1.45423 1.52126 1.15109 1.21635 1.21971 0.98591 0.86552 0.92694 0.89727 1.24211 0.98105 1.03366 0.96609 1.22821 0.94475 0.81548 0.98580 0.89111 1.86281 1.71591 1.18221 1.61510 1.23475 0.96496 1.03014 0.93993 1.21231 1.00145 0.96830 0.94936 0.75920 0.90220 1.21503 1.22112 0.76821 0.72209 0.75045 0.87159 0.91887 0.74974 0.89948 0.85356 0.85625 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.56 -3.32 12.86 -148.98 -1.92 -5.24 16 2 C -0.06 -0.11 3.01 71.24 0.21 0.10 16 3 Si 0.79 -2.74 30.59 68.60 2.10 -0.64 16 4 C -0.19 -0.84 5.47 -20.12 -0.11 -0.95 16 5 C 0.06 -0.13 10.45 83.48 0.87 0.74 16 6 N -0.52 1.04 5.99 -183.62 -1.10 -0.06 16 7 C -0.07 -0.50 7.06 40.35 0.28 -0.21 16 8 C 0.59 5.88 7.79 86.45 0.67 6.56 16 9 O -0.58 -11.00 16.50 -4.31 -0.07 -11.07 16 10 N -0.69 -1.81 5.14 -443.99 -2.28 -4.09 16 11 C 0.11 0.18 4.30 45.52 0.20 0.37 16 12 H 0.08 0.50 7.50 -2.39 -0.02 0.48 16 13 C -0.18 0.27 7.73 31.22 0.24 0.51 16 14 C 0.09 -0.44 5.28 31.21 0.16 -0.28 16 15 H 0.09 -0.75 8.14 -2.39 -0.02 -0.77 16 16 O -0.57 3.06 12.35 -148.98 -1.84 1.22 16 17 C -0.13 0.56 7.65 31.12 0.24 0.80 16 18 C -0.10 -1.06 10.59 22.57 0.24 -0.82 16 19 H 0.39 -1.01 8.74 -74.06 -0.65 -1.66 16 20 H 0.08 -0.04 7.96 -2.38 -0.02 -0.06 16 21 H -0.29 -0.61 7.11 99.48 0.71 0.10 16 22 H -0.29 -0.51 7.11 99.48 0.71 0.20 16 23 H 0.22 -2.25 6.19 -2.91 -0.02 -2.27 16 24 H 0.44 -4.01 8.19 -92.71 -0.76 -4.77 16 25 H 0.41 -0.94 6.76 -92.71 -0.63 -1.56 16 26 H 0.11 -0.39 8.14 -2.39 -0.02 -0.41 16 27 H 0.06 0.11 8.14 -2.39 -0.02 0.09 16 28 H 0.40 -4.75 9.12 -74.06 -0.68 -5.42 16 29 H 0.08 -0.31 8.14 -2.39 -0.02 -0.32 16 30 H 0.13 -0.98 8.14 -2.39 -0.02 -1.00 16 31 H 0.13 1.72 8.06 -2.91 -0.02 1.69 16 Total: 0.00 -25.17 270.18 -3.57 -28.74 By element: Atomic # 1 Polarization: -14.22 SS G_CDS: -1.47 Total: -15.69 kcal Atomic # 6 Polarization: 3.81 SS G_CDS: 3.01 Total: 6.82 kcal Atomic # 7 Polarization: -0.77 SS G_CDS: -3.38 Total: -4.15 kcal Atomic # 8 Polarization: -11.25 SS G_CDS: -3.83 Total: -15.08 kcal Atomic # 14 Polarization: -2.74 SS G_CDS: 2.10 Total: -0.64 kcal Total: -25.17 -3.57 -28.74 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_7348514_10543058.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.176 kcal (2) G-P(sol) polarization free energy of solvation -25.169 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.345 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.566 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -28.735 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.911 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds