Wall clock time and date at job start Sun Mar 7 2021 21:59:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42899 * 1 3 3 Si 1.86298 * 109.47125 * 2 1 4 4 C 1.50708 * 109.47191 * 240.00163 * 2 1 3 5 5 C 1.38238 * 119.99499 * 299.99830 * 4 2 1 6 6 C 1.38236 * 119.99529 * 179.97438 * 5 4 2 7 7 C 1.38233 * 119.99979 * 359.97438 * 6 5 4 8 8 C 1.50700 * 119.99980 * 179.97438 * 7 6 5 9 9 C 1.50702 * 109.46869 * 90.00014 * 8 7 6 10 10 O 1.21283 * 120.00262 * 0.02562 * 9 8 7 11 11 N 1.34777 * 119.99928 * 179.72354 * 9 8 7 12 12 C 1.46499 * 120.00199 * 180.27479 * 11 9 8 13 13 H 1.09004 * 112.84964 * 25.33489 * 12 11 9 14 14 C 1.53778 * 113.61783 * 156.52956 * 12 11 9 15 15 C 1.53780 * 87.08089 * 139.98334 * 14 12 11 16 16 H 1.08999 * 113.61453 * 89.12275 * 15 14 12 17 17 O 1.42906 * 113.61253 * 219.93501 * 15 14 12 18 18 C 1.53778 * 113.61975 * 254.14080 * 12 11 9 19 19 C 1.38233 * 120.00375 * 0.27509 * 7 6 5 20 20 C 1.38234 * 120.00036 * 119.97640 * 4 2 1 21 21 H 0.96701 * 113.99968 * 300.00137 * 1 2 3 22 22 H 1.09001 * 109.47105 * 119.99980 * 2 1 3 23 23 H 1.48508 * 110.00122 * 299.99764 * 3 2 1 24 24 H 1.48497 * 110.00327 * 61.32039 * 3 2 1 25 25 H 1.07994 * 120.00177 * 359.97438 * 5 4 2 26 26 H 1.08000 * 119.99807 * 180.02562 * 6 5 4 27 27 H 1.09004 * 109.47210 * 330.00307 * 8 7 6 28 28 H 1.08994 * 109.47551 * 209.99960 * 8 7 6 29 29 H 0.97000 * 120.00317 * 0.28382 * 11 9 8 30 30 H 1.09002 * 113.61621 * 254.53540 * 14 12 11 31 31 H 1.09006 * 113.61136 * 25.43399 * 14 12 11 32 32 H 0.96703 * 113.99464 * 180.02562 * 17 15 14 33 33 H 1.09001 * 113.61335 * 334.56928 * 18 12 11 34 34 H 1.09000 * 113.61824 * 105.46531 * 18 12 11 35 35 H 1.07996 * 120.00354 * 179.72262 * 19 7 6 36 36 H 1.08002 * 119.99959 * 0.02562 * 20 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4290 0.0000 0.0000 3 14 2.0500 1.7564 0.0000 4 6 1.9314 -0.7104 -1.2305 5 6 1.5974 -2.0339 -1.4492 6 6 2.0577 -2.6854 -2.5782 7 6 2.8516 -2.0132 -3.4886 8 6 3.3539 -2.7236 -4.7191 9 6 2.3606 -2.5513 -5.8393 10 8 1.3450 -1.9140 -5.6566 11 7 2.6037 -3.1003 -7.0459 12 6 1.6410 -2.9277 -8.1366 13 1 1.0322 -2.0304 -8.0257 14 6 2.2606 -3.0827 -9.5355 15 6 0.9819 -3.8394 -9.9319 16 1 0.1917 -3.1921 -10.3124 17 8 1.2232 -4.9715 -10.7698 18 6 0.8228 -4.1933 -8.4422 19 6 3.1898 -0.6913 -3.2673 20 6 2.7257 -0.0384 -2.1407 21 1 -0.3933 0.4417 0.7650 22 1 1.7923 -0.5138 0.8900 23 1 1.5615 2.4679 -1.2086 24 1 1.5879 2.4586 1.2242 25 1 0.9769 -2.5588 -0.7381 26 1 1.7965 -3.7192 -2.7493 27 1 3.4759 -3.7848 -4.5017 28 1 4.3136 -2.3010 -5.0163 29 1 3.4161 -3.6098 -7.1922 30 1 2.3900 -2.1376 -10.0629 31 1 3.1570 -3.7027 -9.5497 32 1 0.4226 -5.4513 -11.0228 33 1 1.3253 -5.1176 -8.1569 34 1 -0.2069 -4.1437 -8.0882 35 1 3.8137 -0.1675 -3.9764 36 1 2.9866 0.9955 -1.9697 There are 48 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 48 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_22_7348514_12335836.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 21:59:47 Heat of formation + Delta-G solvation = -63.133419 kcal Electronic energy + Delta-G solvation = -19254.009423 eV Core-core repulsion = 16091.472367 eV Total energy + Delta-G solvation = -3162.537055 eV No. of doubly occupied orbitals = 48 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 264.119 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -41.33420 -40.46061 -39.40193 -37.67913 -36.36376 -34.26324 -33.69589 -31.85139 -29.82819 -26.86367 -26.13707 -24.64436 -23.72243 -22.04988 -21.38543 -20.82506 -18.83372 -18.48719 -18.04888 -17.53121 -16.91436 -16.83708 -16.28622 -16.10041 -15.91032 -15.24156 -15.02286 -14.62939 -14.59991 -14.27455 -13.85046 -13.78442 -13.58603 -13.32705 -13.10741 -13.05576 -12.64825 -12.33462 -12.15170 -11.86560 -11.78772 -11.63711 -10.99055 -10.77713 -10.45827 -10.04760 -9.76236 -9.50582 -4.93255 0.32660 0.56735 1.32586 1.63444 1.66116 2.01065 2.10985 2.80192 3.20102 3.37034 3.40703 3.56425 3.63533 3.73297 3.82453 3.88033 3.92822 4.01487 4.10556 4.25035 4.40321 4.44034 4.47798 4.56401 4.62436 4.64904 4.77599 4.84427 4.89069 5.04300 5.10588 5.16323 5.46140 5.49360 5.65087 5.66782 6.08374 6.47159 6.48744 6.60640 7.25034 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.535 6.535 2 C -0.076 4.076 3 Si 0.681 3.319 4 C -0.073 4.073 5 C -0.090 4.090 6 C -0.104 4.104 7 C -0.064 4.064 8 C -0.103 4.103 9 C 0.514 3.486 10 O -0.526 6.526 11 N -0.721 5.721 12 C 0.125 3.875 13 H 0.118 0.882 14 C -0.136 4.136 15 C 0.079 3.921 16 H 0.087 0.913 17 O -0.558 6.558 18 C -0.183 4.183 19 C -0.099 4.099 20 C -0.112 4.112 21 H 0.379 0.621 22 H 0.076 0.924 23 H -0.255 1.255 24 H -0.262 1.262 25 H 0.124 0.876 26 H 0.122 0.878 27 H 0.105 0.895 28 H 0.106 0.894 29 H 0.403 0.597 30 H 0.083 0.917 31 H 0.096 0.904 32 H 0.382 0.618 33 H 0.093 0.907 34 H 0.075 0.925 35 H 0.125 0.875 36 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.239 -1.942 -0.067 4.663 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.342 6.342 2 C -0.186 4.186 3 Si 0.582 3.418 4 C -0.073 4.073 5 C -0.108 4.108 6 C -0.122 4.122 7 C -0.065 4.065 8 C -0.143 4.143 9 C 0.301 3.699 10 O -0.401 6.401 11 N -0.374 5.374 12 C 0.019 3.981 13 H 0.135 0.865 14 C -0.174 4.174 15 C 0.019 3.981 16 H 0.105 0.895 17 O -0.364 6.364 18 C -0.222 4.222 19 C -0.118 4.118 20 C -0.130 4.130 21 H 0.227 0.773 22 H 0.094 0.906 23 H -0.180 1.180 24 H -0.187 1.187 25 H 0.142 0.858 26 H 0.140 0.860 27 H 0.123 0.877 28 H 0.124 0.876 29 H 0.237 0.763 30 H 0.101 0.899 31 H 0.114 0.886 32 H 0.229 0.771 33 H 0.112 0.888 34 H 0.094 0.906 35 H 0.143 0.857 36 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges 3.996 -0.739 -0.411 4.085 hybrid contribution -1.405 -0.644 0.371 1.589 sum 2.592 -1.383 -0.040 2.938 Atomic orbital electron populations 1.86610 1.17822 1.80089 1.49696 1.24812 0.84458 1.10934 0.98361 0.95157 0.91681 0.74720 0.80211 1.19237 0.98258 0.94377 0.95423 1.20926 0.98387 0.93972 0.97475 1.20991 0.97096 1.00017 0.94089 1.19252 0.98289 0.94270 0.94665 1.20695 0.98851 1.02993 0.91746 1.20655 0.87403 0.78590 0.83286 1.90766 1.27729 1.39555 1.82081 1.45944 1.24601 1.55826 1.10987 1.22193 0.91509 0.99212 0.85152 0.86456 1.23453 0.98288 1.00899 0.94788 1.23116 0.97926 0.88276 0.88767 0.89521 1.86514 1.36854 1.43132 1.69885 1.24227 1.01672 0.99311 0.96993 1.20877 1.00089 0.93774 0.97011 1.20869 0.98624 0.99178 0.94309 0.77341 0.90611 1.17973 1.18732 0.85783 0.85999 0.87662 0.87557 0.76263 0.89872 0.88553 0.77061 0.88847 0.90634 0.85678 0.85579 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.54 -1.39 12.74 -35.23 -0.45 -1.84 16 2 C -0.08 -0.09 2.81 36.01 0.10 0.01 16 3 Si 0.68 0.10 29.79 -169.99 -5.06 -4.97 16 4 C -0.07 -0.20 5.42 -104.62 -0.57 -0.76 16 5 C -0.09 -0.25 9.61 -39.58 -0.38 -0.63 16 6 C -0.10 -0.22 9.70 -39.58 -0.38 -0.60 16 7 C -0.06 -0.10 4.37 -104.63 -0.46 -0.56 16 8 C -0.10 0.13 5.83 -29.03 -0.17 -0.04 16 9 C 0.51 0.75 7.82 -10.98 -0.09 0.67 16 10 O -0.53 -3.30 15.65 5.55 0.09 -3.21 16 11 N -0.72 0.69 5.36 -53.02 -0.28 0.41 16 12 C 0.12 -0.03 4.21 -67.12 -0.28 -0.32 16 13 H 0.12 0.15 7.50 -51.93 -0.39 -0.24 16 14 C -0.14 0.17 7.66 -25.92 -0.20 -0.03 16 15 C 0.08 -0.07 5.21 -25.83 -0.13 -0.21 16 16 H 0.09 -0.17 8.14 -51.93 -0.42 -0.60 16 17 O -0.56 -0.08 13.68 -35.23 -0.48 -0.56 16 18 C -0.18 0.10 7.73 -25.83 -0.20 -0.10 16 19 C -0.10 -0.16 9.70 -39.58 -0.38 -0.54 16 20 C -0.11 -0.22 8.67 -39.58 -0.34 -0.56 16 21 H 0.38 -0.61 8.74 45.56 0.40 -0.22 16 22 H 0.08 -0.06 7.96 -51.93 -0.41 -0.47 16 23 H -0.26 -0.93 7.11 56.52 0.40 -0.53 16 24 H -0.26 -0.51 7.11 56.52 0.40 -0.11 16 25 H 0.12 0.24 8.06 -52.49 -0.42 -0.18 16 26 H 0.12 0.06 8.06 -52.49 -0.42 -0.36 16 27 H 0.11 -0.36 8.09 -51.93 -0.42 -0.78 16 28 H 0.11 -0.39 8.08 -51.93 -0.42 -0.81 16 29 H 0.40 -1.49 8.71 -40.82 -0.36 -1.85 16 30 H 0.08 -0.14 8.14 -51.93 -0.42 -0.56 16 31 H 0.10 -0.13 8.11 -51.93 -0.42 -0.55 16 32 H 0.38 -1.41 9.12 45.56 0.42 -0.99 16 33 H 0.09 -0.03 8.14 -51.93 -0.42 -0.45 16 34 H 0.07 0.00 8.14 -51.93 -0.42 -0.43 16 35 H 0.13 -0.06 8.06 -52.49 -0.42 -0.48 16 36 H 0.13 0.01 4.88 -52.49 -0.26 -0.25 16 LS Contribution 308.14 15.07 4.64 4.64 Total: 0.00 -9.98 308.14 -9.05 -19.03 By element: Atomic # 1 Polarization: -5.81 SS G_CDS: -4.02 Total: -9.83 kcal Atomic # 6 Polarization: -0.19 SS G_CDS: -3.49 Total: -3.67 kcal Atomic # 7 Polarization: 0.69 SS G_CDS: -0.28 Total: 0.41 kcal Atomic # 8 Polarization: -4.76 SS G_CDS: -0.84 Total: -5.61 kcal Atomic # 14 Polarization: 0.10 SS G_CDS: -5.06 Total: -4.97 kcal Total LS contribution 4.64 Total: 4.64 kcal Total: -9.98 -9.05 -19.03 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_7348514_12335836.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -44.105 kcal (2) G-P(sol) polarization free energy of solvation -9.975 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.080 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.053 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -19.029 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.133 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds