Wall clock time and date at job start Sun Mar 7 2021 21:59:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50694 * 1 3 3 C 1.34847 * 125.90353 * 2 1 4 4 C 1.40944 * 107.46867 * 180.02562 * 3 2 1 5 5 C 1.50701 * 126.26793 * 180.02562 * 4 3 2 6 6 O 1.42898 * 109.47346 * 104.97167 * 5 4 3 7 7 Si 1.86303 * 109.47015 * 344.97234 * 5 4 3 8 8 C 1.34854 * 107.46574 * 359.77048 * 4 3 2 9 9 C 1.50703 * 125.90021 * 180.23837 * 8 4 3 10 10 N 1.36562 * 108.20064 * 0.37025 * 8 4 3 11 11 C 1.40225 * 125.66685 * 179.89232 * 10 8 4 12 12 C 1.38905 * 120.00015 * 89.71556 * 11 10 8 13 13 C 1.50706 * 119.88164 * 359.69647 * 12 11 10 14 14 C 1.38261 * 120.22942 * 179.72087 * 12 11 10 15 15 C 1.37971 * 120.21905 * 0.02562 * 14 12 11 16 16 C 1.39614 * 119.98649 * 359.97438 * 15 14 12 17 17 C 1.47862 * 120.11449 * 179.97438 * 16 15 14 18 18 O 1.21556 * 119.99726 * 180.02562 * 17 16 15 19 19 N 1.34773 * 120.00117 * 0.02562 * 17 16 15 20 20 C 1.46495 * 119.99984 * 179.97438 * 19 17 16 21 21 H 1.08997 * 112.85490 * 336.20331 * 20 19 17 22 22 C 1.53785 * 113.61223 * 107.50830 * 20 19 17 23 23 C 1.53775 * 87.08278 * 89.11401 * 22 20 19 24 24 H 1.09001 * 113.69140 * 139.99198 * 23 22 20 25 25 O 1.42903 * 113.61973 * 270.88662 * 23 22 20 26 26 C 1.53781 * 87.08419 * 25.43408 * 23 22 20 27 27 C 1.38599 * 119.99042 * 269.43419 * 11 10 8 28 28 H 1.09008 * 109.46978 * 269.95670 * 1 2 3 29 29 H 1.09003 * 109.47242 * 29.94807 * 1 2 3 30 30 H 1.09000 * 109.47501 * 149.95796 * 1 2 3 31 31 H 1.07997 * 126.26640 * 0.02562 * 3 2 1 32 32 H 1.09000 * 109.46851 * 224.97909 * 5 4 3 33 33 H 0.96693 * 114.00008 * 300.00222 * 6 5 4 34 34 H 1.48498 * 110.00059 * 180.02562 * 7 5 4 35 35 H 1.48506 * 110.00004 * 301.32371 * 7 5 4 36 36 H 1.09003 * 109.47028 * 270.15517 * 9 8 4 37 37 H 1.08997 * 109.47008 * 30.15060 * 9 8 4 38 38 H 1.09000 * 109.47266 * 150.15053 * 9 8 4 39 39 H 1.09001 * 109.46823 * 90.00539 * 13 12 11 40 40 H 1.09003 * 109.46803 * 210.00208 * 13 12 11 41 41 H 1.09002 * 109.46831 * 330.00081 * 13 12 11 42 42 H 1.08005 * 119.88988 * 179.97438 * 14 12 11 43 43 H 1.08005 * 120.00932 * 180.02562 * 15 14 12 44 44 H 0.97005 * 120.00036 * 0.02562 * 19 17 16 45 45 H 1.09000 * 113.61270 * 203.66636 * 22 20 19 46 46 H 1.09000 * 113.61130 * 334.56773 * 22 20 19 47 47 H 0.96700 * 113.99482 * 277.49693 * 25 23 22 48 48 H 1.09003 * 113.61864 * 220.02432 * 26 23 22 49 49 H 1.09003 * 113.61585 * 89.11116 * 26 23 22 50 50 H 1.07999 * 120.10425 * 0.25872 * 27 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.2977 1.0923 0.0000 4 6 3.6348 0.6466 -0.0006 5 6 4.8648 1.5173 -0.0003 6 8 5.4550 1.5076 1.3011 7 14 4.3913 3.2610 -0.4544 8 6 3.6120 -0.7018 0.0042 9 6 4.8176 -1.6060 0.0105 10 7 2.3077 -1.1063 -0.0006 11 6 1.8643 -2.4366 -0.0001 12 6 1.6452 -3.0952 1.2032 13 6 1.8914 -2.3796 2.5065 14 6 1.2025 -4.4050 1.2093 15 6 0.9758 -5.0669 0.0201 16 6 1.1931 -4.4137 -1.1945 17 6 0.9516 -5.1206 -2.4706 18 8 1.1419 -4.5500 -3.5269 19 7 0.5206 -6.3975 -2.4625 20 6 0.2808 -7.0977 -3.7268 21 1 0.0801 -6.4185 -4.5553 22 6 1.3367 -8.1687 -4.0476 23 6 0.4542 -9.1593 -3.2701 24 1 0.3935 -10.1458 -3.7297 25 8 0.7500 -9.2153 -1.8732 26 6 -0.7352 -8.2464 -3.6118 27 6 1.6391 -3.0924 -1.2002 28 1 -0.3633 -0.0008 1.0277 29 1 -0.3634 0.8905 -0.5130 30 1 -0.3634 -0.8896 -0.5145 31 1 1.9670 2.1204 0.0004 32 1 5.5812 1.1344 -0.7271 33 1 4.8726 1.8362 1.9995 34 1 5.5956 4.1298 -0.4582 35 1 3.7473 3.2804 -1.7924 36 1 5.1126 -1.8254 -1.0156 37 1 5.6401 -1.1112 0.5270 38 1 4.5723 -2.5352 0.5247 39 1 0.9773 -1.8777 2.8237 40 1 2.1921 -3.1013 3.2660 41 1 2.6830 -1.6424 2.3722 42 1 1.0343 -4.9119 2.1480 43 1 0.6296 -6.0900 0.0289 44 1 0.3684 -6.8528 -1.6195 45 1 1.4179 -8.3972 -5.1103 46 1 2.3030 -7.9835 -3.5784 47 1 1.4972 -9.7880 -1.6521 48 1 -1.4416 -8.1238 -2.7907 49 1 -1.2204 -8.4961 -4.5553 50 1 1.8086 -2.5817 -2.1366 There are 66 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 66 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_7348514_12335842.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 21:59:53 Heat of formation + Delta-G solvation = -9.753239 kcal Electronic energy + Delta-G solvation = -32314.723780 eV Core-core repulsion = 28082.246655 eV Total energy + Delta-G solvation = -4232.477125 eV No. of doubly occupied orbitals = 66 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 357.177 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -42.96013 -41.65241 -40.35686 -39.28597 -37.67115 -36.11241 -34.90527 -33.79099 -33.63095 -33.55054 -30.65377 -30.16277 -28.73566 -27.19186 -26.80457 -25.62606 -24.69014 -23.73028 -23.68940 -22.04387 -20.95968 -20.69635 -20.36138 -18.90699 -18.10296 -17.72347 -17.49758 -17.31668 -16.91755 -16.60623 -16.33976 -16.02112 -15.96457 -15.58761 -15.34112 -15.10340 -15.03178 -14.82833 -14.80066 -14.57359 -14.24594 -14.13937 -14.03562 -13.74562 -13.58628 -13.47979 -13.37511 -13.19188 -13.17614 -13.03050 -12.81495 -12.76622 -12.62333 -12.46594 -12.35661 -12.13785 -11.79037 -11.51013 -11.28223 -10.72167 -10.37915 -10.28698 -10.19990 -9.91677 -9.70598 -8.82185 -4.94880 -0.49550 -0.07801 1.05542 1.43259 1.52580 1.66602 1.73714 1.84405 1.97120 2.04307 2.48767 3.08674 3.39631 3.44788 3.56596 3.64602 3.67724 3.70327 3.76168 3.80656 3.85578 3.98644 4.08065 4.11693 4.12252 4.31627 4.34737 4.41346 4.51414 4.55034 4.61351 4.63497 4.63832 4.65659 4.69134 4.72434 4.73135 4.77998 4.82602 4.92340 4.93361 4.96723 4.99914 5.01483 5.03762 5.08511 5.13076 5.23350 5.37224 5.44813 5.52679 6.00611 6.15917 6.35828 6.47979 6.83198 6.88579 7.01186 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.082 4.082 2 C 0.018 3.982 3 C -0.195 4.195 4 C -0.204 4.204 5 C -0.036 4.036 6 O -0.557 6.557 7 Si 0.790 3.210 8 C 0.035 3.965 9 C -0.083 4.083 10 N -0.402 5.402 11 C 0.091 3.909 12 C -0.040 4.040 13 C -0.119 4.119 14 C -0.110 4.110 15 C -0.056 4.056 16 C -0.145 4.145 17 C 0.557 3.443 18 O -0.584 6.584 19 N -0.686 5.686 20 C 0.106 3.894 21 H 0.083 0.917 22 C -0.183 4.183 23 C 0.086 3.914 24 H 0.091 0.909 25 O -0.567 6.567 26 C -0.134 4.134 27 C -0.057 4.057 28 H 0.086 0.914 29 H 0.093 0.907 30 H 0.051 0.949 31 H 0.164 0.836 32 H 0.092 0.908 33 H 0.392 0.608 34 H -0.301 1.301 35 H -0.300 1.300 36 H 0.062 0.938 37 H 0.088 0.912 38 H 0.064 0.936 39 H 0.088 0.912 40 H 0.095 0.905 41 H 0.059 0.941 42 H 0.175 0.825 43 H 0.162 0.838 44 H 0.417 0.583 45 H 0.109 0.891 46 H 0.065 0.935 47 H 0.400 0.600 48 H 0.082 0.918 49 H 0.127 0.873 50 H 0.112 0.888 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.561 -6.498 6.141 10.037 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.090 4.090 3 C -0.218 4.218 4 C -0.211 4.211 5 C -0.147 4.147 6 O -0.365 6.365 7 Si 0.697 3.303 8 C -0.075 4.075 9 C -0.140 4.140 10 N -0.077 5.077 11 C 0.002 3.998 12 C -0.041 4.041 13 C -0.175 4.175 14 C -0.128 4.128 15 C -0.074 4.074 16 C -0.148 4.148 17 C 0.345 3.655 18 O -0.466 6.466 19 N -0.338 5.338 20 C 0.000 4.000 21 H 0.101 0.899 22 C -0.222 4.222 23 C 0.027 3.973 24 H 0.109 0.891 25 O -0.375 6.375 26 C -0.172 4.172 27 C -0.077 4.077 28 H 0.105 0.895 29 H 0.112 0.888 30 H 0.070 0.930 31 H 0.182 0.818 32 H 0.109 0.891 33 H 0.242 0.758 34 H -0.229 1.229 35 H -0.227 1.227 36 H 0.081 0.919 37 H 0.107 0.893 38 H 0.083 0.917 39 H 0.106 0.894 40 H 0.114 0.886 41 H 0.078 0.922 42 H 0.192 0.808 43 H 0.179 0.821 44 H 0.257 0.743 45 H 0.127 0.873 46 H 0.084 0.916 47 H 0.251 0.749 48 H 0.101 0.899 49 H 0.145 0.855 50 H 0.130 0.870 Dipole moment (debyes) X Y Z Total from point charges -4.450 -5.630 4.544 8.494 hybrid contribution 0.878 -0.930 -0.649 1.434 sum -3.571 -6.560 3.895 8.424 Atomic orbital electron populations 1.20365 0.86723 1.03301 1.03576 1.20794 0.94383 0.84860 1.08975 1.20807 0.91400 0.98443 1.11184 1.19749 0.95383 0.92634 1.13326 1.24407 0.93273 1.08739 0.88288 1.86413 1.44177 1.88966 1.16948 0.93644 0.80219 0.74057 0.82362 1.20463 0.84329 0.94390 1.08318 1.20302 0.93737 0.97722 1.02238 1.41355 1.05414 1.03023 1.57905 1.17391 1.05051 0.84167 0.93198 1.20560 0.94213 0.94797 0.94514 1.20906 1.02988 1.00814 0.92798 1.21351 0.98770 0.92835 0.99798 1.21715 0.94587 1.00737 0.90384 1.19677 1.07010 0.94529 0.93630 1.18506 0.76311 0.82038 0.88630 1.90774 1.53804 1.67957 1.34018 1.45486 1.66281 1.11663 1.10325 1.21980 0.97978 0.93448 0.86578 0.89923 1.24155 0.98395 0.97006 1.02612 1.22748 0.94859 0.97894 0.81839 0.89125 1.86294 1.56225 1.72452 1.22566 1.23491 0.96251 0.93190 1.04261 1.21171 0.95391 0.93832 0.97332 0.89500 0.88835 0.93017 0.81833 0.89091 0.75803 1.22880 1.22729 0.91882 0.89318 0.91690 0.89375 0.88604 0.92225 0.80785 0.82070 0.74338 0.87265 0.91621 0.74886 0.89950 0.85494 0.87003 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.01 10.09 71.23 0.72 0.70 16 2 C 0.02 0.09 6.86 41.04 0.28 0.37 16 3 C -0.19 -0.77 9.27 22.15 0.21 -0.56 16 4 C -0.20 -1.21 5.35 -19.98 -0.11 -1.32 16 5 C -0.04 -0.16 2.50 71.24 0.18 0.01 16 6 O -0.56 -2.04 12.88 -148.98 -1.92 -3.96 16 7 Si 0.79 1.99 30.81 68.60 2.11 4.10 16 8 C 0.03 0.25 6.29 41.05 0.26 0.51 16 9 C -0.08 -0.44 9.87 71.24 0.70 0.27 16 10 N -0.40 -2.44 1.87 -320.36 -0.60 -3.03 16 11 C 0.09 0.42 4.49 38.04 0.17 0.59 16 12 C -0.04 0.02 5.90 -19.70 -0.12 -0.09 16 13 C -0.12 0.40 9.76 71.24 0.69 1.09 16 14 C -0.11 0.52 9.67 22.21 0.21 0.73 16 15 C -0.06 0.17 9.54 22.54 0.21 0.38 16 16 C -0.14 -0.65 5.87 -20.10 -0.12 -0.77 16 17 C 0.56 4.70 7.77 86.79 0.67 5.37 16 18 O -0.58 -10.25 15.94 -3.89 -0.06 -10.31 16 19 N -0.69 -1.34 5.10 -442.88 -2.26 -3.60 16 20 C 0.11 0.13 4.32 45.52 0.20 0.33 16 21 H 0.08 0.47 7.46 -2.39 -0.02 0.45 16 22 C -0.18 0.40 7.71 31.12 0.24 0.64 16 23 C 0.09 -0.48 5.28 31.12 0.16 -0.32 16 24 H 0.09 -0.78 8.14 -2.39 -0.02 -0.80 16 25 O -0.57 3.33 12.31 -148.98 -1.83 1.50 16 26 C -0.13 0.58 7.66 31.12 0.24 0.82 16 27 C -0.06 -0.44 9.51 22.65 0.22 -0.23 16 28 H 0.09 -0.25 8.14 -2.38 -0.02 -0.27 16 29 H 0.09 -0.20 8.14 -2.39 -0.02 -0.22 16 30 H 0.05 0.13 7.83 -2.39 -0.02 0.11 16 31 H 0.16 -0.18 6.59 -2.91 -0.02 -0.20 16 32 H 0.09 0.61 7.96 -2.39 -0.02 0.59 16 33 H 0.39 -1.64 8.70 -74.06 -0.64 -2.28 16 34 H -0.30 -2.71 7.11 99.48 0.71 -2.00 16 35 H -0.30 -2.74 7.11 99.48 0.71 -2.04 16 36 H 0.06 0.38 8.14 -2.39 -0.02 0.36 16 37 H 0.09 0.44 7.87 -2.39 -0.02 0.42 16 38 H 0.06 0.27 7.83 -2.39 -0.02 0.25 16 39 H 0.09 -0.41 8.14 -2.39 -0.02 -0.43 16 40 H 0.10 -0.69 8.08 -2.39 -0.02 -0.71 16 41 H 0.06 0.04 6.96 -2.39 -0.02 0.03 16 42 H 0.17 -1.96 8.06 -2.91 -0.02 -1.98 16 43 H 0.16 -1.41 6.40 -2.91 -0.02 -1.43 16 44 H 0.42 -1.09 5.62 -92.70 -0.52 -1.61 16 45 H 0.11 -0.45 8.14 -2.39 -0.02 -0.46 16 46 H 0.06 0.03 8.14 -2.39 -0.02 0.01 16 47 H 0.40 -5.05 9.12 -74.06 -0.68 -5.72 16 48 H 0.08 -0.30 8.14 -2.39 -0.02 -0.32 16 49 H 0.13 -0.97 8.14 -2.39 -0.02 -0.99 16 50 H 0.11 1.47 7.65 -2.91 -0.02 1.44 16 Total: 0.00 -24.25 410.28 -0.34 -24.59 By element: Atomic # 1 Polarization: -16.99 SS G_CDS: -0.81 Total: -17.80 kcal Atomic # 6 Polarization: 3.49 SS G_CDS: 5.03 Total: 8.52 kcal Atomic # 7 Polarization: -3.77 SS G_CDS: -2.86 Total: -6.63 kcal Atomic # 8 Polarization: -8.96 SS G_CDS: -3.82 Total: -12.77 kcal Atomic # 14 Polarization: 1.99 SS G_CDS: 2.11 Total: 4.10 kcal Total: -24.25 -0.34 -24.59 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_7348514_12335842.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.835 kcal (2) G-P(sol) polarization free energy of solvation -24.245 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.410 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.343 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -24.589 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.753 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds