Wall clock time and date at job start Sun Mar 7 2021 22:00:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.34810 * 125.90282 * 2 1 4 4 C 1.40990 * 107.48472 * 180.19329 * 3 2 1 5 5 C 1.50703 * 126.25678 * 179.74764 * 4 3 2 6 6 O 1.42894 * 109.46885 * 255.01914 * 5 4 3 7 7 Si 1.86297 * 109.46936 * 15.02134 * 5 4 3 8 8 C 1.34808 * 107.48388 * 359.61804 * 4 3 2 9 9 C 1.50708 * 125.90113 * 180.13380 * 8 4 3 10 10 N 1.36647 * 108.19795 * 0.37743 * 8 4 3 11 11 C 1.39667 * 125.68664 * 179.79454 * 10 8 4 12 12 C 1.40196 * 120.15600 * 89.70300 * 11 10 8 13 13 C 1.47575 * 120.19195 * 359.97438 * 12 11 10 14 14 O 1.21590 * 119.99857 * 359.97438 * 13 12 11 15 15 N 1.34775 * 120.00240 * 179.97438 * 13 12 11 16 16 C 1.46503 * 120.00377 * 179.97438 * 15 13 12 17 17 H 1.08998 * 112.84890 * 336.20359 * 16 15 13 18 18 C 1.53778 * 113.61278 * 107.50564 * 16 15 13 19 19 C 1.53779 * 87.08321 * 89.11992 * 18 16 15 20 20 H 1.08994 * 113.69513 * 139.99284 * 19 18 16 21 21 O 1.42898 * 113.61377 * 270.88707 * 19 18 16 22 22 C 1.53776 * 113.61847 * 205.00516 * 16 15 13 23 23 C 1.39660 * 119.61533 * 179.77114 * 12 11 10 24 24 C 1.37824 * 119.91873 * 0.51231 * 23 12 11 25 25 C 1.38538 * 120.30677 * 359.74327 * 24 23 12 26 26 C 1.38070 * 120.39598 * 359.97438 * 25 24 23 27 27 H 1.09000 * 109.47580 * 90.02920 * 1 2 3 28 28 H 1.08996 * 109.47289 * 210.03135 * 1 2 3 29 29 H 1.09005 * 109.47303 * 330.02900 * 1 2 3 30 30 H 1.08002 * 126.25465 * 359.91894 * 3 2 1 31 31 H 1.08999 * 109.46748 * 135.02145 * 5 4 3 32 32 H 0.96700 * 114.00129 * 179.97438 * 6 5 4 33 33 H 1.48505 * 110.00024 * 178.68257 * 7 5 4 34 34 H 1.48497 * 110.00065 * 299.99852 * 7 5 4 35 35 H 1.08997 * 109.47212 * 270.28537 * 9 8 4 36 36 H 1.08998 * 109.47000 * 30.28331 * 9 8 4 37 37 H 1.09000 * 109.46933 * 150.28699 * 9 8 4 38 38 H 0.96998 * 119.99908 * 0.02562 * 15 13 12 39 39 H 1.08999 * 113.61375 * 203.66853 * 18 16 15 40 40 H 1.09004 * 113.61633 * 334.56785 * 18 16 15 41 41 H 0.96699 * 114.00002 * 277.49604 * 21 19 18 42 42 H 1.08999 * 113.61463 * 25.43036 * 22 16 15 43 43 H 1.08998 * 113.61557 * 156.33892 * 22 16 15 44 44 H 1.08002 * 120.03950 * 180.25224 * 23 12 11 45 45 H 1.07996 * 119.85062 * 179.71734 * 24 23 12 46 46 H 1.08001 * 119.80015 * 179.97438 * 25 24 23 47 47 H 1.07997 * 119.96177 * 179.97438 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2975 1.0920 0.0000 4 6 3.6352 0.6465 -0.0045 5 6 4.8647 1.5179 -0.0115 6 8 5.4493 1.5063 -1.3154 7 14 4.3923 3.2620 0.4418 8 6 3.6133 -0.7014 0.0014 9 6 4.8195 -1.6049 0.0024 10 7 2.3084 -1.1069 0.0010 11 6 1.8670 -2.4320 0.0020 12 6 1.6496 -3.1010 1.2148 13 6 1.8863 -2.4092 2.4967 14 8 2.2714 -1.2560 2.5031 15 7 1.6755 -3.0558 3.6603 16 6 1.9110 -2.3693 4.9329 17 1 2.6147 -1.5417 4.8435 18 6 0.6198 -2.0040 5.6839 19 6 0.7104 -3.3862 6.3518 20 1 0.4440 -3.3803 7.4087 21 8 0.0504 -4.4204 5.6190 22 6 2.2258 -3.3223 6.0980 23 6 1.2036 -4.4244 1.2027 24 6 0.9905 -5.0670 0.0022 25 6 1.2115 -4.4046 -1.1943 26 6 1.6468 -3.0943 -1.1973 27 1 -0.3634 -0.0005 -1.0276 28 1 -0.3633 -0.8897 0.5143 29 1 -0.3634 0.8903 0.5134 30 1 1.9666 2.1200 -0.0012 31 1 5.5844 1.1365 0.7128 32 1 6.2467 2.0477 -1.3938 33 1 5.6008 4.1247 0.4695 34 1 3.4113 3.7935 -0.5381 35 1 5.1108 -1.8231 -1.0250 36 1 5.6436 -1.1101 0.5164 37 1 4.5764 -2.5348 0.5164 38 1 1.3686 -3.9759 3.6552 39 1 0.7395 -1.1740 6.3802 40 1 -0.2468 -1.8897 5.0326 41 1 -0.9029 -4.4656 5.7744 42 1 2.6558 -4.2724 5.7810 43 1 2.7846 -2.8527 6.9075 44 1 1.0300 -4.9449 2.1329 45 1 0.6500 -6.0919 -0.0059 46 1 1.0423 -4.9162 -2.1303 47 1 1.8173 -2.5848 -2.1341 There are 63 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 63 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_7348514_12335856.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 22:00:02 Heat of formation + Delta-G solvation = 8.412204 kcal Electronic energy + Delta-G solvation = -31378.969392 eV Core-core repulsion = 27302.817599 eV Total energy + Delta-G solvation = -4076.151794 eV No. of doubly occupied orbitals = 63 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 343.162 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -42.87191 -41.36503 -40.14205 -38.99864 -37.79485 -36.03415 -34.47236 -33.98886 -33.62910 -32.04721 -30.48977 -30.13831 -27.30552 -26.75387 -26.04194 -24.65758 -24.50855 -23.42312 -21.93059 -21.03398 -20.57254 -19.96277 -19.05488 -18.45200 -18.08288 -17.77626 -17.32296 -16.59743 -16.47245 -16.13875 -15.94059 -15.80340 -15.74621 -15.26604 -15.18795 -14.96463 -14.80142 -14.48483 -14.24776 -14.15109 -13.83749 -13.71514 -13.57790 -13.52641 -13.38335 -13.23676 -13.14310 -12.94026 -12.67932 -12.53677 -12.43947 -12.34253 -12.27170 -11.89008 -11.43897 -10.99718 -10.67091 -10.33722 -10.28172 -10.12686 -9.95521 -9.54908 -8.69085 -4.86270 -0.42487 0.02517 1.20262 1.39303 1.59474 1.75560 1.84765 1.90548 2.01108 2.03668 2.59684 3.12772 3.50440 3.53589 3.61346 3.64369 3.76040 3.79111 3.87544 3.94846 4.03009 4.15907 4.17886 4.19582 4.22621 4.25368 4.35354 4.46596 4.53939 4.64232 4.64605 4.65517 4.71840 4.73607 4.74775 4.82913 4.89219 4.92134 4.95248 4.98684 5.02705 5.07263 5.17614 5.22622 5.26924 5.41996 5.56804 5.62722 6.08610 6.24291 6.48256 6.62055 6.70823 6.85706 7.17380 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 C 0.032 3.968 3 C -0.207 4.207 4 C -0.170 4.170 5 C -0.046 4.046 6 O -0.559 6.559 7 Si 0.762 3.238 8 C 0.052 3.948 9 C -0.071 4.071 10 N -0.390 5.390 11 C 0.144 3.856 12 C -0.143 4.143 13 C 0.543 3.457 14 O -0.543 6.543 15 N -0.691 5.691 16 C 0.114 3.886 17 H 0.083 0.917 18 C -0.180 4.180 19 C 0.085 3.915 20 H 0.089 0.911 21 O -0.567 6.567 22 C -0.136 4.136 23 C -0.075 4.075 24 C -0.105 4.105 25 C -0.076 4.076 26 C -0.124 4.124 27 H 0.078 0.922 28 H 0.055 0.945 29 H 0.087 0.913 30 H 0.138 0.862 31 H 0.073 0.927 32 H 0.387 0.613 33 H -0.280 1.280 34 H -0.299 1.299 35 H 0.072 0.928 36 H 0.081 0.919 37 H 0.054 0.946 38 H 0.412 0.588 39 H 0.108 0.892 40 H 0.064 0.936 41 H 0.399 0.601 42 H 0.078 0.922 43 H 0.125 0.875 44 H 0.156 0.844 45 H 0.170 0.830 46 H 0.165 0.835 47 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.583 -7.320 4.826 9.471 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.077 4.077 3 C -0.231 4.231 4 C -0.176 4.176 5 C -0.156 4.156 6 O -0.368 6.368 7 Si 0.668 3.332 8 C -0.058 4.058 9 C -0.129 4.129 10 N -0.065 5.065 11 C 0.054 3.946 12 C -0.147 4.147 13 C 0.331 3.669 14 O -0.420 6.420 15 N -0.344 5.344 16 C 0.008 3.992 17 H 0.101 0.899 18 C -0.219 4.219 19 C 0.026 3.974 20 H 0.106 0.894 21 O -0.376 6.376 22 C -0.174 4.174 23 C -0.094 4.094 24 C -0.123 4.123 25 C -0.094 4.094 26 C -0.143 4.143 27 H 0.097 0.903 28 H 0.074 0.926 29 H 0.106 0.894 30 H 0.156 0.844 31 H 0.091 0.909 32 H 0.237 0.763 33 H -0.207 1.207 34 H -0.227 1.227 35 H 0.090 0.910 36 H 0.100 0.900 37 H 0.073 0.927 38 H 0.251 0.749 39 H 0.126 0.874 40 H 0.082 0.918 41 H 0.250 0.750 42 H 0.096 0.904 43 H 0.143 0.857 44 H 0.173 0.827 45 H 0.188 0.812 46 H 0.182 0.818 47 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges -3.333 -6.490 4.293 8.465 hybrid contribution 0.261 0.015 -0.704 0.751 sum -3.071 -6.475 3.589 8.015 Atomic orbital electron populations 1.20270 0.87085 1.03134 1.02805 1.20473 0.93976 0.84916 1.08354 1.20565 0.92355 0.97704 1.12476 1.18590 0.93521 0.92169 1.13332 1.24192 0.94505 1.10164 0.86703 1.86588 1.46618 1.72403 1.31148 0.93802 0.78647 0.72190 0.88593 1.20257 0.84397 0.94017 1.07103 1.20190 0.93308 0.97041 1.02330 1.40977 1.05240 1.02942 1.57301 1.17806 0.99984 0.83471 0.93384 1.20239 1.06057 0.96325 0.92058 1.18415 0.77884 0.86230 0.84420 1.90894 1.45878 1.17580 1.87684 1.45497 1.67722 1.17113 1.04100 1.21862 0.98230 0.96177 0.82897 0.89865 1.24116 0.98000 0.99514 1.00229 1.22752 0.93426 0.86123 0.95116 0.89366 1.86299 1.27155 1.53763 1.70344 1.23484 0.95809 1.00088 0.97985 1.21597 0.95550 0.91495 1.00773 1.21679 0.97735 1.01919 0.90951 1.21678 0.94573 0.92546 1.00623 1.21455 1.00122 0.96283 0.96418 0.90345 0.92642 0.89405 0.84393 0.90933 0.76341 1.20690 1.22679 0.90963 0.90006 0.92653 0.74923 0.87383 0.91756 0.75008 0.90361 0.85675 0.82682 0.81227 0.81770 0.85049 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.49 10.09 71.24 0.72 0.23 16 2 C 0.03 0.39 6.02 41.02 0.25 0.64 16 3 C -0.21 -2.87 9.27 22.16 0.21 -2.66 16 4 C -0.17 -2.37 5.39 -19.98 -0.11 -2.47 16 5 C -0.05 -0.43 2.59 71.24 0.18 -0.25 16 6 O -0.56 -5.62 12.86 -148.98 -1.92 -7.54 16 7 Si 0.76 5.23 30.84 68.60 2.12 7.34 16 8 C 0.05 0.69 5.98 41.02 0.25 0.94 16 9 C -0.07 -0.63 9.87 71.24 0.70 0.08 16 10 N -0.39 -4.52 1.45 -319.53 -0.46 -4.99 16 11 C 0.14 1.00 4.52 38.49 0.17 1.17 16 12 C -0.14 -0.63 5.89 -19.99 -0.12 -0.75 16 13 C 0.54 4.22 7.77 86.71 0.67 4.89 16 14 O -0.54 -8.15 13.29 -4.00 -0.05 -8.20 16 15 N -0.69 -1.33 5.10 -443.17 -2.26 -3.59 16 16 C 0.11 0.11 4.32 45.51 0.20 0.31 16 17 H 0.08 0.45 7.46 -2.39 -0.02 0.43 16 18 C -0.18 0.40 7.71 31.12 0.24 0.64 16 19 C 0.09 -0.45 5.28 31.12 0.16 -0.28 16 20 H 0.09 -0.72 8.14 -2.39 -0.02 -0.74 16 21 O -0.57 3.01 12.31 -148.98 -1.83 1.18 16 22 C -0.14 0.53 7.66 31.12 0.24 0.77 16 23 C -0.08 0.22 9.53 22.52 0.21 0.43 16 24 C -0.11 0.64 10.02 22.24 0.22 0.86 16 25 C -0.08 0.32 10.03 22.30 0.22 0.54 16 26 C -0.12 -0.28 9.96 22.36 0.22 -0.05 16 27 H 0.08 0.31 8.14 -2.39 -0.02 0.29 16 28 H 0.05 0.37 7.83 -2.39 -0.02 0.35 16 29 H 0.09 0.39 8.14 -2.38 -0.02 0.37 16 30 H 0.14 1.62 6.55 -2.91 -0.02 1.60 16 31 H 0.07 0.47 7.50 -2.39 -0.02 0.45 16 32 H 0.39 0.46 8.74 -74.06 -0.65 -0.19 16 33 H -0.28 -2.38 7.11 99.48 0.71 -1.67 16 34 H -0.30 -4.11 7.05 99.48 0.70 -3.40 16 35 H 0.07 0.56 8.14 -2.39 -0.02 0.54 16 36 H 0.08 0.60 7.50 -2.39 -0.02 0.58 16 37 H 0.05 0.46 7.83 -2.39 -0.02 0.44 16 38 H 0.41 -0.71 5.62 -92.71 -0.52 -1.24 16 39 H 0.11 -0.44 8.14 -2.39 -0.02 -0.46 16 40 H 0.06 0.03 8.14 -2.38 -0.02 0.01 16 41 H 0.40 -4.81 9.12 -74.06 -0.68 -5.48 16 42 H 0.08 -0.22 8.14 -2.39 -0.02 -0.23 16 43 H 0.13 -0.89 8.14 -2.39 -0.02 -0.91 16 44 H 0.16 -1.18 6.40 -2.91 -0.02 -1.19 16 45 H 0.17 -2.10 8.06 -2.91 -0.02 -2.12 16 46 H 0.16 -1.59 8.06 -2.91 -0.02 -1.61 16 47 H 0.13 0.33 8.06 -2.91 -0.02 0.31 16 Total: 0.00 -24.08 385.78 -0.55 -24.63 By element: Atomic # 1 Polarization: -13.09 SS G_CDS: -0.79 Total: -13.88 kcal Atomic # 6 Polarization: 0.39 SS G_CDS: 4.65 Total: 5.04 kcal Atomic # 7 Polarization: -5.85 SS G_CDS: -2.72 Total: -8.57 kcal Atomic # 8 Polarization: -10.75 SS G_CDS: -3.80 Total: -14.56 kcal Atomic # 14 Polarization: 5.23 SS G_CDS: 2.12 Total: 7.34 kcal Total: -24.08 -0.55 -24.63 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_7348514_12335856.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.046 kcal (2) G-P(sol) polarization free energy of solvation -24.084 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.962 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.550 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -24.634 kcal (6) G-S(sol) free energy of system = (1) + (5) 8.412 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds