Wall clock time and date at job start Sun Mar 7 2021 22:00:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.34861 * 125.89647 * 2 1 4 4 C 1.40947 * 107.46487 * 180.23773 * 3 2 1 5 5 C 1.50700 * 126.26471 * 179.75672 * 4 3 2 6 6 O 1.42901 * 109.46977 * 255.00143 * 5 4 3 7 7 Si 1.86300 * 109.46977 * 15.00321 * 5 4 3 8 8 C 1.34850 * 107.46556 * 359.76233 * 4 3 2 9 9 C 1.50705 * 125.89828 * 179.97438 * 8 4 3 10 10 N 1.36568 * 125.90219 * 179.82554 * 2 1 3 11 11 C 1.40194 * 125.66849 * 0.02562 * 10 2 1 12 12 C 1.38823 * 120.06710 * 294.69435 * 11 10 2 13 13 C 1.38119 * 119.93563 * 179.97438 * 12 11 10 14 14 C 1.38282 * 120.06614 * 0.02562 * 13 12 11 15 15 C 1.50699 * 119.93332 * 180.02562 * 14 13 12 16 16 C 1.50700 * 109.46929 * 90.00103 * 15 14 13 17 17 O 1.21282 * 120.00441 * 359.97438 * 16 15 14 18 18 N 1.34781 * 120.00105 * 180.02562 * 16 15 14 19 19 C 1.46501 * 120.00458 * 179.97438 * 18 16 15 20 20 H 1.09002 * 112.84560 * 23.80211 * 19 18 16 21 21 C 1.53777 * 113.61369 * 154.99466 * 19 18 16 22 22 C 1.53787 * 87.08065 * 89.20256 * 21 19 18 23 23 H 1.08992 * 113.61716 * 140.06309 * 22 21 19 24 24 O 1.42905 * 113.61154 * 270.88386 * 22 21 19 25 25 C 1.53780 * 87.17190 * 25.46879 * 22 21 19 26 26 C 1.38276 * 120.12957 * 0.26863 * 14 13 12 27 27 C 1.38119 * 120.06510 * 359.46062 * 26 14 13 28 28 H 1.08998 * 109.46632 * 270.17502 * 1 2 3 29 29 H 1.09004 * 109.47404 * 30.17462 * 1 2 3 30 30 H 1.09001 * 109.46849 * 150.17904 * 1 2 3 31 31 H 1.07992 * 126.26687 * 359.97438 * 3 2 1 32 32 H 1.09001 * 109.46664 * 135.00601 * 5 4 3 33 33 H 0.96700 * 114.00080 * 60.00593 * 6 5 4 34 34 H 1.48499 * 109.99851 * 58.67966 * 7 5 4 35 35 H 1.48498 * 109.99530 * 179.97438 * 7 5 4 36 36 H 1.08993 * 109.47235 * 270.02486 * 9 8 4 37 37 H 1.09005 * 109.46772 * 30.02403 * 9 8 4 38 38 H 1.08999 * 109.47053 * 150.01658 * 9 8 4 39 39 H 1.08004 * 120.03418 * 359.95364 * 12 11 10 40 40 H 1.08006 * 119.97090 * 179.97438 * 13 12 11 41 41 H 1.08997 * 109.47176 * 329.99685 * 15 14 13 42 42 H 1.09001 * 109.47069 * 209.99295 * 15 14 13 43 43 H 0.97004 * 119.99871 * 359.97438 * 18 16 15 44 44 H 1.08994 * 113.61853 * 334.65443 * 21 19 18 45 45 H 1.09002 * 113.61486 * 203.74784 * 21 19 18 46 46 H 0.96696 * 114.00036 * 178.46879 * 24 22 21 47 47 H 1.09007 * 113.61163 * 89.07369 * 25 22 21 48 48 H 1.08997 * 113.61950 * 219.97502 * 25 22 21 49 49 H 1.07997 * 119.96333 * 179.70262 * 26 14 13 50 50 H 1.07997 * 120.03710 * 180.27080 * 27 26 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2977 1.0925 0.0000 4 6 3.6349 0.6468 -0.0056 5 6 4.8647 1.5178 -0.0128 6 8 5.4488 1.5064 -1.3169 7 14 4.3931 3.2619 0.4414 8 6 3.6122 -0.7015 -0.0034 9 6 4.8179 -1.6056 -0.0083 10 7 2.3078 -1.1062 0.0034 11 6 1.8646 -2.4363 0.0069 12 6 1.1682 -2.9344 1.0996 13 6 0.7323 -4.2450 1.1000 14 6 0.9895 -5.0610 0.0136 15 6 0.5121 -6.4903 0.0169 16 6 -0.8709 -6.5593 -0.5777 17 8 -1.4155 -5.5475 -0.9656 18 7 -1.5031 -7.7455 -0.6776 19 6 -2.8478 -7.8126 -1.2552 20 1 -3.0647 -6.9770 -1.9207 21 6 -3.1917 -9.1851 -1.8573 22 6 -3.7146 -9.5771 -0.4652 23 1 -4.6305 -10.1672 -0.4930 24 8 -2.7143 -10.1447 0.3830 25 6 -3.9545 -8.0785 -0.2172 26 6 1.6883 -4.5694 -1.0737 27 6 2.1218 -3.2580 -1.0822 28 1 -0.3632 0.0031 1.0277 29 1 -0.3634 0.8884 -0.5165 30 1 -0.3633 -0.8916 -0.5111 31 1 1.9669 2.1205 -0.0004 32 1 5.5846 1.1357 0.7111 33 1 4.8631 1.8341 -2.0131 34 1 3.7555 3.2828 1.7824 35 1 5.5974 4.1307 0.4385 36 1 5.1036 -1.8247 -1.0370 37 1 5.6450 -1.1108 0.5010 38 1 4.5772 -2.5349 0.5079 39 1 0.9676 -2.2978 1.9488 40 1 0.1908 -4.6333 1.9500 41 1 0.4863 -6.8624 1.0411 42 1 1.1929 -7.1022 -0.5749 43 1 -1.0677 -8.5548 -0.3670 44 1 -2.3178 -9.7553 -2.1720 45 1 -3.9692 -9.1447 -2.6203 46 1 -3.0314 -10.3717 1.2678 47 1 -4.9402 -7.7361 -0.5325 48 1 -3.6960 -7.7559 0.7914 49 1 1.8919 -5.2104 -1.9186 50 1 2.6637 -2.8733 -1.9334 There are 66 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 66 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_7348514_12335864.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 22:00:07 Heat of formation + Delta-G solvation = -12.535282 kcal Electronic energy + Delta-G solvation = -31314.055299 eV Core-core repulsion = 27081.457535 eV Total energy + Delta-G solvation = -4232.597764 eV No. of doubly occupied orbitals = 66 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 357.177 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -42.84829 -41.43095 -40.33413 -39.30456 -37.69025 -36.01122 -34.89807 -33.87741 -33.70000 -32.12038 -31.97123 -30.16255 -28.63071 -26.92084 -26.76355 -25.32220 -24.51078 -23.97782 -23.13449 -21.63698 -20.96913 -20.56963 -20.30980 -18.64029 -18.07265 -17.78646 -17.49951 -17.29534 -17.19740 -16.37213 -16.33886 -16.13188 -15.82595 -15.59909 -15.40521 -15.21577 -14.99345 -14.73467 -14.60849 -14.55584 -14.32498 -14.16388 -13.98623 -13.75374 -13.57330 -13.49420 -13.41236 -13.22401 -13.13949 -12.84686 -12.81629 -12.68091 -12.59814 -12.31277 -12.16448 -12.07989 -11.78543 -11.45018 -11.05270 -10.68194 -10.33976 -10.13657 -10.10883 -10.03950 -9.39876 -8.83654 -4.93351 -0.08646 0.24042 1.12428 1.43972 1.58324 1.69028 1.80181 1.85780 2.02708 2.08842 2.60401 3.13626 3.50134 3.54929 3.67861 3.69573 3.72293 3.72778 3.81553 3.85990 3.98400 3.98554 4.12029 4.16101 4.19150 4.24325 4.31891 4.41482 4.50237 4.52408 4.54785 4.63589 4.67237 4.68911 4.71818 4.71931 4.75282 4.82643 4.88715 4.90107 4.96144 4.97895 5.02179 5.04415 5.08208 5.14020 5.25574 5.36686 5.41553 5.59802 5.70524 6.00236 6.17708 6.50095 6.55018 6.85283 6.86342 7.24633 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.081 4.081 2 C 0.011 3.989 3 C -0.194 4.194 4 C -0.207 4.207 5 C -0.037 4.037 6 O -0.559 6.559 7 Si 0.787 3.213 8 C 0.032 3.968 9 C -0.077 4.077 10 N -0.404 5.404 11 C 0.101 3.899 12 C -0.116 4.116 13 C -0.097 4.097 14 C -0.061 4.061 15 C -0.098 4.098 16 C 0.513 3.487 17 O -0.581 6.581 18 N -0.697 5.697 19 C 0.111 3.889 20 H 0.080 0.920 21 C -0.137 4.137 22 C 0.084 3.916 23 H 0.085 0.915 24 O -0.566 6.566 25 C -0.182 4.182 26 C -0.097 4.097 27 C -0.115 4.115 28 H 0.076 0.924 29 H 0.098 0.902 30 H 0.052 0.948 31 H 0.165 0.835 32 H 0.095 0.905 33 H 0.391 0.609 34 H -0.295 1.295 35 H -0.299 1.299 36 H 0.076 0.924 37 H 0.080 0.920 38 H 0.061 0.939 39 H 0.128 0.872 40 H 0.146 0.854 41 H 0.132 0.868 42 H 0.132 0.868 43 H 0.417 0.583 44 H 0.080 0.920 45 H 0.122 0.878 46 H 0.399 0.601 47 H 0.105 0.895 48 H 0.068 0.932 49 H 0.146 0.854 50 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.405 -7.127 0.274 8.383 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.097 4.097 3 C -0.218 4.218 4 C -0.213 4.213 5 C -0.148 4.148 6 O -0.367 6.367 7 Si 0.694 3.306 8 C -0.078 4.078 9 C -0.135 4.135 10 N -0.079 5.079 11 C 0.012 3.988 12 C -0.135 4.135 13 C -0.115 4.115 14 C -0.061 4.061 15 C -0.138 4.138 16 C 0.301 3.699 17 O -0.460 6.460 18 N -0.349 5.349 19 C 0.005 3.995 20 H 0.098 0.902 21 C -0.175 4.175 22 C 0.024 3.976 23 H 0.103 0.897 24 O -0.374 6.374 25 C -0.221 4.221 26 C -0.115 4.115 27 C -0.134 4.134 28 H 0.094 0.906 29 H 0.117 0.883 30 H 0.071 0.929 31 H 0.182 0.818 32 H 0.113 0.887 33 H 0.241 0.759 34 H -0.223 1.223 35 H -0.227 1.227 36 H 0.095 0.905 37 H 0.098 0.902 38 H 0.080 0.920 39 H 0.146 0.854 40 H 0.163 0.837 41 H 0.150 0.850 42 H 0.150 0.850 43 H 0.255 0.745 44 H 0.098 0.902 45 H 0.140 0.860 46 H 0.250 0.750 47 H 0.123 0.877 48 H 0.086 0.914 49 H 0.164 0.836 50 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges -3.928 -6.240 0.366 7.383 hybrid contribution -0.023 -0.783 0.885 1.182 sum -3.951 -7.024 1.251 8.155 Atomic orbital electron populations 1.20352 0.86849 1.03593 1.03079 1.20816 0.94401 0.85118 1.09400 1.20827 0.91485 0.98401 1.11063 1.19785 0.95380 0.92746 1.13425 1.24450 0.93301 1.08863 0.88169 1.86416 1.44226 1.89031 1.16993 0.93554 0.80491 0.74120 0.82466 1.20575 0.84467 0.94559 1.08198 1.20270 0.92959 0.97272 1.02973 1.41563 1.05575 1.03478 1.57246 1.17813 1.01739 0.83248 0.96020 1.21199 0.98803 0.96450 0.97020 1.21127 0.98649 0.92554 0.99169 1.19622 0.96704 0.95730 0.94054 1.20762 0.92964 0.94350 1.05691 1.21002 0.88136 0.82887 0.77848 1.90735 1.68912 1.36043 1.50348 1.45644 1.16774 1.09869 1.62644 1.21896 0.82809 0.98841 0.95982 0.90170 1.23467 1.03064 0.94469 0.96476 1.22749 0.91410 0.92152 0.91245 0.89696 1.86314 1.38737 1.83209 1.29173 1.24173 0.99757 0.98164 1.00029 1.21140 0.97205 0.94746 0.98424 1.21208 1.00868 0.94349 0.96947 0.90551 0.88292 0.92872 0.81811 0.88715 0.75930 1.22266 1.22747 0.90539 0.90164 0.91966 0.85416 0.83674 0.84987 0.84961 0.74499 0.90160 0.85991 0.75026 0.87705 0.91364 0.83620 0.85430 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.22 9.95 71.24 0.71 0.49 16 2 C 0.01 0.07 6.81 41.05 0.28 0.35 16 3 C -0.19 -1.02 9.27 22.16 0.21 -0.82 16 4 C -0.21 -1.40 5.35 -19.98 -0.11 -1.51 16 5 C -0.04 -0.18 2.60 71.24 0.19 0.00 16 6 O -0.56 -2.70 12.88 -148.98 -1.92 -4.62 16 7 Si 0.79 2.02 30.81 68.60 2.11 4.13 16 8 C 0.03 0.25 6.81 41.04 0.28 0.53 16 9 C -0.08 -0.37 9.72 71.24 0.69 0.32 16 10 N -0.40 -3.16 2.79 -320.25 -0.89 -4.06 16 11 C 0.10 0.65 4.65 38.09 0.18 0.82 16 12 C -0.12 -0.53 9.74 22.38 0.22 -0.32 16 13 C -0.10 -0.18 9.69 22.25 0.22 0.04 16 14 C -0.06 -0.05 4.38 -19.85 -0.09 -0.14 16 15 C -0.10 0.45 5.83 29.10 0.17 0.62 16 16 C 0.51 1.08 7.82 87.66 0.69 1.76 16 17 O -0.58 -6.88 15.63 -3.04 -0.05 -6.93 16 18 N -0.70 1.13 5.16 -439.61 -2.27 -1.14 16 19 C 0.11 -0.07 4.33 45.61 0.20 0.13 16 20 H 0.08 0.32 7.46 -2.39 -0.02 0.31 16 21 C -0.14 0.65 7.66 31.12 0.24 0.89 16 22 C 0.08 -0.49 5.27 31.12 0.16 -0.32 16 23 H 0.09 -0.70 8.14 -2.39 -0.02 -0.72 16 24 O -0.57 3.34 12.32 -148.98 -1.84 1.50 16 25 C -0.18 0.61 7.73 31.21 0.24 0.85 16 26 C -0.10 -0.19 9.69 22.25 0.22 0.03 16 27 C -0.11 -0.54 9.72 22.38 0.22 -0.33 16 28 H 0.08 0.09 8.14 -2.39 -0.02 0.07 16 29 H 0.10 -0.10 8.14 -2.39 -0.02 -0.12 16 30 H 0.05 0.28 7.83 -2.39 -0.02 0.26 16 31 H 0.16 0.00 6.59 -2.91 -0.02 -0.02 16 32 H 0.10 0.58 7.50 -2.39 -0.02 0.56 16 33 H 0.39 -0.98 8.70 -74.06 -0.64 -1.63 16 34 H -0.30 -2.50 7.11 99.48 0.71 -1.79 16 35 H -0.30 -2.66 7.11 99.48 0.71 -1.96 16 36 H 0.08 0.30 8.14 -2.39 -0.02 0.28 16 37 H 0.08 0.34 7.50 -2.38 -0.02 0.32 16 38 H 0.06 0.26 7.83 -2.39 -0.02 0.24 16 39 H 0.13 0.49 8.06 -2.91 -0.02 0.47 16 40 H 0.15 -0.32 8.06 -2.91 -0.02 -0.34 16 41 H 0.13 -1.25 8.08 -2.39 -0.02 -1.27 16 42 H 0.13 -1.26 8.08 -2.39 -0.02 -1.28 16 43 H 0.42 -2.20 7.60 -92.71 -0.70 -2.90 16 44 H 0.08 -0.30 8.14 -2.39 -0.02 -0.32 16 45 H 0.12 -0.91 8.14 -2.39 -0.02 -0.93 16 46 H 0.40 -5.02 9.12 -74.06 -0.68 -5.69 16 47 H 0.10 -0.50 8.14 -2.38 -0.02 -0.52 16 48 H 0.07 -0.10 8.14 -2.39 -0.02 -0.12 16 49 H 0.15 -0.30 8.06 -2.91 -0.02 -0.32 16 50 H 0.13 0.53 8.06 -2.91 -0.02 0.51 16 Total: 0.00 -23.64 414.51 -0.96 -24.60 By element: Atomic # 1 Polarization: -15.90 SS G_CDS: -1.01 Total: -16.90 kcal Atomic # 6 Polarization: -1.48 SS G_CDS: 4.90 Total: 3.42 kcal Atomic # 7 Polarization: -2.03 SS G_CDS: -3.16 Total: -5.19 kcal Atomic # 8 Polarization: -6.25 SS G_CDS: -3.80 Total: -10.05 kcal Atomic # 14 Polarization: 2.02 SS G_CDS: 2.11 Total: 4.13 kcal Total: -23.64 -0.96 -24.60 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_7348514_12335864.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.060 kcal (2) G-P(sol) polarization free energy of solvation -23.636 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.576 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.960 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -24.595 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.535 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds