Wall clock time and date at job start Sun Mar 7 2021 22:00:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42906 * 1 3 3 Si 1.86302 * 109.47284 * 2 1 4 4 C 1.50700 * 109.46739 * 119.99826 * 2 1 3 5 5 C 1.34837 * 125.65284 * 65.00339 * 4 2 1 6 6 C 1.40807 * 107.04883 * 180.02562 * 5 4 2 7 7 C 1.36102 * 106.73060 * 359.97438 * 6 5 4 8 8 C 1.47567 * 125.94068 * 179.97438 * 7 6 5 9 9 C 1.39919 * 119.95783 * 0.02562 * 8 7 6 10 10 C 1.36425 * 120.28057 * 179.97438 * 9 8 7 11 11 C 1.39878 * 120.18589 * 0.02562 * 10 9 8 12 12 C 1.47301 * 120.04484 * 180.02562 * 11 10 9 13 13 O 1.21623 * 119.99668 * 179.97438 * 12 11 10 14 14 N 1.34776 * 119.99894 * 359.97438 * 12 11 10 15 15 C 1.46501 * 119.99615 * 179.97438 * 14 12 11 16 16 H 1.08995 * 112.85522 * 336.19843 * 15 14 12 17 17 C 1.53783 * 113.61194 * 107.50427 * 15 14 12 18 18 C 1.53788 * 87.08146 * 89.11504 * 17 15 14 19 19 H 1.08993 * 113.61445 * 139.97982 * 18 17 15 20 20 O 1.42899 * 113.69114 * 270.87319 * 18 17 15 21 21 C 1.53777 * 87.07850 * 25.43205 * 18 17 15 22 22 C 1.40404 * 119.90727 * 0.02562 * 11 10 9 23 23 O 1.35676 * 120.13265 * 179.97438 * 22 11 10 24 24 C 1.38269 * 119.72637 * 359.97438 * 22 11 10 25 25 O 1.34239 * 125.65356 * 245.28613 * 4 2 1 26 26 H 0.96698 * 113.99879 * 300.00584 * 1 2 3 27 27 H 1.08996 * 109.46794 * 239.99619 * 2 1 3 28 28 H 1.48494 * 109.99721 * 178.68042 * 3 2 1 29 29 H 1.48501 * 109.99576 * 299.99915 * 3 2 1 30 30 H 1.07995 * 126.47649 * 0.03556 * 5 4 2 31 31 H 1.07995 * 126.63153 * 179.97438 * 6 5 4 32 32 H 1.08000 * 119.85960 * 0.02562 * 9 8 7 33 33 H 1.08001 * 119.90650 * 179.74296 * 10 9 8 34 34 H 0.96996 * 120.00191 * 0.02562 * 14 12 11 35 35 H 1.08998 * 113.61925 * 203.66269 * 17 15 14 36 36 H 1.09000 * 113.61649 * 334.57074 * 17 15 14 37 37 H 0.96694 * 114.00085 * 277.53839 * 20 18 17 38 38 H 1.09000 * 113.61805 * 220.01863 * 21 18 17 39 39 H 1.09007 * 113.69273 * 89.12817 * 21 18 17 40 40 H 0.96707 * 114.00004 * 269.99323 * 23 22 11 41 41 H 1.07998 * 120.09942 * 180.02562 * 24 22 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4291 0.0000 0.0000 3 14 2.0501 1.7565 0.0000 4 6 1.9313 -0.7104 1.2305 5 6 1.7567 -2.0180 1.5094 6 6 2.3799 -2.2627 2.7481 7 6 2.9072 -1.0783 3.1621 8 6 3.6554 -0.8538 4.4141 9 6 3.8755 -1.9169 5.2968 10 6 4.5667 -1.7169 6.4558 11 6 5.0601 -0.4463 6.7701 12 6 5.8065 -0.2339 8.0221 13 8 6.2355 0.8711 8.2944 14 7 6.0141 -1.2641 8.8660 15 6 6.7569 -1.0530 10.1109 16 1 7.4234 -0.1918 10.0653 17 6 5.8726 -1.0840 11.3687 18 6 6.1249 -2.6004 11.4129 19 1 6.2807 -2.9879 12.4196 20 8 5.1745 -3.3625 10.6659 21 6 7.4311 -2.3259 10.6494 22 6 4.8428 0.6264 5.8906 23 8 5.3188 1.8608 6.1912 24 6 4.1417 0.4194 4.7169 25 8 2.6220 -0.1451 2.2332 26 1 -0.3933 0.4418 0.7650 27 1 1.7923 -0.5139 -0.8899 28 1 3.5346 1.7702 0.0321 29 1 1.5616 2.4678 -1.2085 30 1 1.2372 -2.7410 0.8981 31 1 2.4298 -3.2075 3.2688 32 1 3.4973 -2.9002 5.0591 33 1 4.7296 -2.5408 7.1347 34 1 5.6722 -2.1455 8.6487 35 1 6.2986 -0.5457 12.2153 36 1 4.8325 -0.8198 11.1778 37 1 4.3508 -3.5383 11.1408 38 1 7.6494 -3.0642 9.8777 39 1 8.2842 -2.1271 11.2982 40 1 4.7017 2.4082 6.6959 41 1 3.9715 1.2401 4.0359 There are 60 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 60 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_7348514_12807986.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 22:00:40 Heat of formation + Delta-G solvation = -76.932597 kcal Electronic energy + Delta-G solvation = -27608.483485 eV Core-core repulsion = 23423.305247 eV Total energy + Delta-G solvation = -4185.178238 eV No. of doubly occupied orbitals = 60 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 332.118 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -43.75231 -41.75139 -40.59998 -39.14129 -38.09357 -37.83108 -35.99899 -34.47226 -34.08575 -32.95341 -31.31032 -30.45335 -27.24216 -26.75269 -25.57225 -24.25089 -24.03978 -22.49515 -22.05543 -21.38325 -20.62445 -19.71849 -19.02729 -18.53543 -17.99530 -17.72992 -17.46240 -17.24661 -16.64243 -16.51787 -16.35472 -16.01703 -15.82164 -15.74262 -15.40551 -15.05191 -14.69758 -14.40624 -14.31674 -13.99968 -13.88540 -13.71324 -13.60619 -13.54845 -13.42943 -12.82887 -12.72871 -12.65293 -12.30835 -12.26736 -11.90210 -11.44254 -11.14459 -10.96940 -10.74448 -10.66076 -10.59115 -10.08636 -9.96756 -9.02949 -5.05845 -0.81504 0.12711 0.62923 1.13015 1.38562 1.44790 1.74026 1.86711 1.89621 2.01878 2.61814 2.99641 3.13816 3.28194 3.41219 3.50016 3.58489 3.63689 3.79812 3.86464 3.87014 3.97311 3.99140 4.16461 4.20596 4.30745 4.38672 4.61075 4.68851 4.71048 4.73782 4.78596 4.83099 4.88367 4.89442 4.98955 5.03229 5.06197 5.09749 5.20017 5.41402 5.50920 5.56219 5.95675 6.48044 6.60001 6.69351 6.88159 7.15431 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.540 6.540 2 C -0.024 4.024 3 Si 0.770 3.230 4 C -0.052 4.052 5 C -0.184 4.184 6 C -0.172 4.172 7 C 0.006 3.994 8 C 0.027 3.973 9 C -0.109 4.109 10 C -0.052 4.052 11 C -0.181 4.181 12 C 0.554 3.446 13 O -0.565 6.565 14 N -0.691 5.691 15 C 0.108 3.892 16 H 0.082 0.918 17 C -0.180 4.180 18 C 0.086 3.914 19 H 0.090 0.910 20 O -0.567 6.567 21 C -0.137 4.137 22 C 0.162 3.838 23 O -0.494 6.494 24 C -0.151 4.151 25 O -0.174 6.174 26 H 0.400 0.600 27 H 0.138 0.862 28 H -0.298 1.298 29 H -0.277 1.277 30 H 0.166 0.834 31 H 0.181 0.819 32 H 0.169 0.831 33 H 0.164 0.836 34 H 0.415 0.585 35 H 0.109 0.891 36 H 0.067 0.933 37 H 0.400 0.600 38 H 0.079 0.921 39 H 0.125 0.875 40 H 0.409 0.591 41 H 0.143 0.857 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.210 -5.356 4.614 8.228 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.348 6.348 2 C -0.134 4.134 3 Si 0.675 3.325 4 C -0.102 4.102 5 C -0.203 4.203 6 C -0.191 4.191 7 C -0.043 4.043 8 C 0.026 3.974 9 C -0.127 4.127 10 C -0.070 4.070 11 C -0.185 4.185 12 C 0.343 3.657 13 O -0.445 6.445 14 N -0.344 5.344 15 C 0.002 3.998 16 H 0.100 0.900 17 C -0.219 4.219 18 C 0.026 3.974 19 H 0.107 0.893 20 O -0.375 6.375 21 C -0.175 4.175 22 C 0.116 3.884 23 O -0.308 6.308 24 C -0.169 4.169 25 O -0.071 6.071 26 H 0.250 0.750 27 H 0.155 0.845 28 H -0.225 1.225 29 H -0.203 1.203 30 H 0.184 0.816 31 H 0.198 0.802 32 H 0.186 0.814 33 H 0.181 0.819 34 H 0.254 0.746 35 H 0.127 0.873 36 H 0.086 0.914 37 H 0.251 0.749 38 H 0.097 0.903 39 H 0.143 0.857 40 H 0.269 0.731 41 H 0.161 0.839 Dipole moment (debyes) X Y Z Total from point charges -2.313 -4.146 3.141 5.693 hybrid contribution -0.703 -0.533 0.279 0.925 sum -3.016 -4.679 3.420 6.534 Atomic orbital electron populations 1.86534 1.15824 1.82080 1.50351 1.24412 0.85446 1.10874 0.92699 0.93363 0.78037 0.75808 0.85309 1.23245 1.00530 0.94305 0.92168 1.21836 1.04179 0.95830 0.98423 1.22242 1.00782 0.98960 0.97127 1.20529 1.04544 0.87925 0.91344 1.17930 0.95435 0.93847 0.90176 1.21025 0.99332 0.99416 0.92936 1.21113 0.93944 0.95107 0.96871 1.20534 1.05629 0.96198 0.96098 1.18300 0.79451 0.84412 0.83568 1.90803 1.51890 1.25331 1.76517 1.45524 1.56196 1.12399 1.20291 1.21927 0.94523 0.99511 0.83793 0.89980 1.24133 1.00846 0.98686 0.98235 1.22737 0.89725 0.89628 0.95285 0.89269 1.86300 1.30940 1.74164 1.46128 1.23498 0.97292 0.95972 1.00765 1.18462 0.92174 0.85668 0.92101 1.84729 1.45743 1.23500 1.76797 1.21592 0.99315 0.98189 0.97848 1.83922 1.58113 1.38314 1.26793 0.74971 0.84458 1.22532 1.20300 0.81646 0.80161 0.81377 0.81882 0.74618 0.87300 0.91386 0.74902 0.90260 0.85657 0.73060 0.83911 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.54 0.94 12.88 -148.98 -1.92 -0.98 16 2 C -0.02 0.03 2.98 71.24 0.21 0.24 16 3 Si 0.77 -0.46 32.11 68.60 2.20 1.75 16 4 C -0.05 -0.06 6.20 24.90 0.15 0.09 16 5 C -0.18 -0.05 10.78 22.12 0.24 0.19 16 6 C -0.17 0.16 10.26 22.40 0.23 0.39 16 7 C 0.01 0.01 7.02 24.24 0.17 0.18 16 8 C 0.03 0.04 5.87 -20.08 -0.12 -0.08 16 9 C -0.11 0.35 9.48 22.25 0.21 0.56 16 10 C -0.05 0.12 9.47 22.24 0.21 0.33 16 11 C -0.18 -0.82 5.89 -19.97 -0.12 -0.94 16 12 C 0.55 4.50 7.75 86.63 0.67 5.18 16 13 O -0.57 -9.05 14.74 16.89 0.25 -8.80 16 14 N -0.69 -1.47 5.10 -443.41 -2.26 -3.73 16 15 C 0.11 0.14 4.32 45.52 0.20 0.34 16 16 H 0.08 0.48 7.46 -2.39 -0.02 0.46 16 17 C -0.18 0.47 7.71 31.12 0.24 0.71 16 18 C 0.09 -0.47 5.27 31.12 0.16 -0.31 16 19 H 0.09 -0.76 8.14 -2.39 -0.02 -0.78 16 20 O -0.57 3.24 12.32 -148.98 -1.84 1.41 16 21 C -0.14 0.51 7.66 31.12 0.24 0.75 16 22 C 0.16 1.03 6.71 22.80 0.15 1.18 16 23 O -0.49 -4.22 11.56 -68.94 -0.80 -5.02 16 24 C -0.15 -0.58 9.65 22.61 0.22 -0.36 16 25 O -0.17 -0.58 8.79 -6.05 -0.05 -0.63 16 26 H 0.40 -3.73 8.70 -74.06 -0.64 -4.38 16 27 H 0.14 -0.30 7.96 -2.39 -0.02 -0.32 16 28 H -0.30 -2.10 7.11 99.48 0.71 -1.39 16 29 H -0.28 -1.23 7.11 99.48 0.71 -0.53 16 30 H 0.17 -0.40 8.06 -2.91 -0.02 -0.42 16 31 H 0.18 -1.23 7.24 -2.91 -0.02 -1.26 16 32 H 0.17 -1.59 6.95 -2.91 -0.02 -1.61 16 33 H 0.16 -1.32 6.38 -2.91 -0.02 -1.34 16 34 H 0.41 -0.86 5.60 -92.71 -0.52 -1.38 16 35 H 0.11 -0.50 8.14 -2.39 -0.02 -0.52 16 36 H 0.07 -0.04 8.14 -2.39 -0.02 -0.05 16 37 H 0.40 -5.08 9.12 -74.06 -0.68 -5.75 16 38 H 0.08 -0.21 8.14 -2.39 -0.02 -0.23 16 39 H 0.13 -0.87 8.14 -2.38 -0.02 -0.89 16 40 H 0.41 0.40 9.06 -74.05 -0.67 -0.27 16 41 H 0.14 0.43 7.90 -2.91 -0.02 0.40 16 Total: 0.00 -25.11 353.89 -2.68 -27.78 By element: Atomic # 1 Polarization: -18.89 SS G_CDS: -1.34 Total: -20.23 kcal Atomic # 6 Polarization: 5.37 SS G_CDS: 3.07 Total: 8.45 kcal Atomic # 7 Polarization: -1.47 SS G_CDS: -2.26 Total: -3.73 kcal Atomic # 8 Polarization: -9.66 SS G_CDS: -4.36 Total: -14.01 kcal Atomic # 14 Polarization: -0.46 SS G_CDS: 2.20 Total: 1.75 kcal Total: -25.11 -2.68 -27.78 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_7348514_12807986.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -49.149 kcal (2) G-P(sol) polarization free energy of solvation -25.106 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -74.255 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.677 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -27.783 kcal (6) G-S(sol) free energy of system = (1) + (5) -76.933 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds