Wall clock time and date at job start Sun Mar 7 2021 22:00:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42890 * 1 3 3 Si 1.86302 * 109.47523 * 2 1 4 4 C 1.50703 * 109.47297 * 119.99846 * 2 1 3 5 5 C 1.38338 * 119.86949 * 64.99719 * 4 2 1 6 6 C 1.38005 * 120.12483 * 180.02562 * 5 4 2 7 7 C 1.39400 * 119.87410 * 359.97438 * 6 5 4 8 8 C 1.48273 * 120.13030 * 180.02562 * 7 6 5 9 9 C 1.39494 * 119.97870 * 179.97438 * 8 7 6 10 10 C 1.37671 * 120.02701 * 180.02562 * 9 8 7 11 11 C 1.39708 * 119.97266 * 0.26653 * 10 9 8 12 12 C 1.47718 * 120.02289 * 179.71953 * 11 10 9 13 13 O 1.21572 * 120.00129 * 359.97438 * 12 11 10 14 14 N 1.34777 * 119.99936 * 179.97438 * 12 11 10 15 15 C 1.46494 * 120.00122 * 180.02562 * 14 12 11 16 16 H 1.09000 * 112.84985 * 334.66737 * 15 14 12 17 17 C 1.53775 * 113.61737 * 105.86351 * 15 14 12 18 18 C 1.54048 * 86.98699 * 89.16397 * 17 15 14 19 19 H 1.08995 * 113.62629 * 139.98033 * 18 17 15 20 20 O 1.42906 * 113.69075 * 270.87718 * 18 17 15 21 21 C 1.53780 * 87.07535 * 25.43430 * 18 17 15 22 22 C 1.39708 * 119.95032 * 359.43559 * 11 10 9 23 23 C 1.37668 * 119.97348 * 0.60175 * 22 11 10 24 24 C 1.39405 * 119.74362 * 0.27722 * 7 6 5 25 25 C 1.38001 * 119.86832 * 359.48886 * 24 7 6 26 26 H 0.96698 * 114.00144 * 300.00078 * 1 2 3 27 27 H 1.09003 * 109.47360 * 239.99424 * 2 1 3 28 28 H 1.48503 * 109.99591 * 299.99795 * 3 2 1 29 29 H 1.48498 * 109.99957 * 61.31434 * 3 2 1 30 30 H 1.07996 * 119.93511 * 0.02562 * 5 4 2 31 31 H 1.08003 * 120.06077 * 179.97438 * 6 5 4 32 32 H 1.08004 * 119.99105 * 0.02562 * 9 8 7 33 33 H 1.08002 * 120.01096 * 179.97438 * 10 9 8 34 34 H 0.97000 * 119.99776 * 0.02562 * 14 12 11 35 35 H 1.09004 * 113.61985 * 203.66316 * 17 15 14 36 36 H 1.08995 * 113.61662 * 334.57144 * 17 15 14 37 37 H 0.96696 * 113.99691 * 277.52802 * 20 18 17 38 38 H 1.09009 * 113.61473 * 220.02291 * 21 18 17 39 39 H 1.08991 * 113.61631 * 89.12233 * 21 18 17 40 40 H 1.07997 * 120.01192 * 180.28338 * 22 11 10 41 41 H 1.07999 * 119.98468 * 179.67469 * 23 22 11 42 42 H 1.07994 * 120.06341 * 179.70530 * 24 7 6 43 43 H 1.08008 * 119.93311 * 180.23453 * 25 24 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4289 0.0000 0.0000 3 14 2.0500 1.7564 0.0000 4 6 1.9313 -0.7104 1.2305 5 6 1.6829 -2.0612 1.3958 6 6 2.1401 -2.7169 2.5209 7 6 2.8538 -2.0155 3.4914 8 6 3.3481 -2.7144 4.7020 9 6 4.0624 -2.0095 5.6709 10 6 4.5223 -2.6576 6.7952 11 6 4.2781 -4.0229 6.9627 12 6 4.7763 -4.7207 8.1656 13 8 5.3996 -4.1070 9.0100 14 7 4.5401 -6.0377 8.3270 15 6 5.0337 -6.7296 9.5202 16 1 5.9037 -6.2436 9.9618 17 6 3.9313 -7.0635 10.5390 18 6 3.7457 -8.3915 9.7807 19 1 3.5752 -9.2473 10.4337 20 8 2.8025 -8.3142 8.7098 21 6 5.2074 -8.2452 9.3259 22 6 3.5572 -4.7265 5.9947 23 6 3.0990 -4.0765 4.8709 24 6 3.0964 -0.6532 3.3218 25 6 2.6386 -0.0092 2.1904 26 1 -0.3933 0.4417 0.7650 27 1 1.7923 -0.5139 -0.8899 28 1 1.5615 2.4678 -1.2086 29 1 1.5879 2.4586 1.2242 30 1 1.1303 -2.6036 0.6431 31 1 1.9452 -3.7714 2.6491 32 1 4.2548 -0.9550 5.5392 33 1 5.0756 -2.1117 7.5450 34 1 4.0431 -6.5274 7.6531 35 1 4.3009 -7.1900 11.5566 36 1 3.0676 -6.4013 10.4806 37 1 1.8814 -8.4055 8.9896 38 1 5.3732 -8.5363 8.2886 39 1 5.9252 -8.6940 10.0123 40 1 3.3639 -5.7810 6.1254 41 1 2.5462 -4.6214 4.1200 42 1 3.6447 -0.1038 4.0727 43 1 2.8293 1.0454 2.0562 There are 59 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 59 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_7348514_13158362.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 22:00:47 Heat of formation + Delta-G solvation = -28.691861 kcal Electronic energy + Delta-G solvation = -26004.207618 eV Core-core repulsion = 22174.721880 eV Total energy + Delta-G solvation = -3829.485738 eV No. of doubly occupied orbitals = 59 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 326.135 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -41.66776 -40.92692 -40.01636 -39.02971 -37.64176 -36.07577 -34.45561 -33.61752 -32.53785 -31.58065 -30.77308 -27.19945 -26.77869 -25.61869 -24.67543 -24.16321 -22.60880 -22.39296 -21.36160 -20.63249 -19.38367 -18.61688 -18.10436 -17.75827 -17.29238 -16.84423 -16.49027 -16.32386 -16.11030 -16.03235 -15.80972 -15.42482 -15.21846 -15.04982 -14.92825 -14.81323 -14.31509 -14.24757 -14.05528 -13.69106 -13.57784 -13.50523 -13.17530 -12.82211 -12.66495 -12.59623 -12.32902 -12.06948 -11.94666 -11.53081 -11.48259 -11.15406 -10.78642 -10.69171 -10.59177 -10.12827 -10.08561 -9.95370 -9.09112 -4.92878 -0.70940 0.32730 0.40474 0.48793 1.30194 1.58315 1.74592 1.94720 2.01511 2.58470 2.99050 3.11496 3.37396 3.45087 3.47164 3.61794 3.62019 3.73487 3.81922 3.83468 3.86929 4.00867 4.04060 4.14478 4.25374 4.26990 4.36769 4.54619 4.63683 4.65594 4.69906 4.71613 4.80600 4.85994 4.88861 4.91139 4.96726 5.02217 5.07960 5.12718 5.19507 5.25849 5.40659 5.49598 5.52546 5.64503 5.77886 5.93063 6.44317 6.46627 6.84445 7.09887 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.548 6.548 2 C -0.082 4.082 3 Si 0.764 3.236 4 C -0.115 4.115 5 C -0.101 4.101 6 C -0.108 4.108 7 C -0.059 4.059 8 C -0.021 4.021 9 C -0.121 4.121 10 C -0.069 4.069 11 C -0.153 4.153 12 C 0.554 3.446 13 O -0.583 6.583 14 N -0.690 5.690 15 C 0.106 3.894 16 H 0.084 0.916 17 C -0.182 4.182 18 C 0.084 3.916 19 H 0.091 0.909 20 O -0.567 6.567 21 C -0.135 4.135 22 C -0.075 4.075 23 C -0.120 4.120 24 C -0.107 4.107 25 C -0.121 4.121 26 H 0.386 0.614 27 H 0.126 0.874 28 H -0.305 1.305 29 H -0.282 1.282 30 H 0.133 0.867 31 H 0.145 0.855 32 H 0.151 0.849 33 H 0.129 0.871 34 H 0.415 0.585 35 H 0.110 0.890 36 H 0.064 0.936 37 H 0.399 0.601 38 H 0.080 0.920 39 H 0.128 0.872 40 H 0.150 0.850 41 H 0.156 0.844 42 H 0.146 0.854 43 H 0.143 0.857 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.608 -3.999 -0.567 4.084 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.356 6.356 2 C -0.191 4.191 3 Si 0.670 3.330 4 C -0.115 4.115 5 C -0.119 4.119 6 C -0.126 4.126 7 C -0.059 4.059 8 C -0.021 4.021 9 C -0.139 4.139 10 C -0.088 4.088 11 C -0.156 4.156 12 C 0.343 3.657 13 O -0.465 6.465 14 N -0.342 5.342 15 C 0.001 3.999 16 H 0.102 0.898 17 C -0.221 4.221 18 C 0.025 3.975 19 H 0.108 0.892 20 O -0.376 6.376 21 C -0.172 4.172 22 C -0.093 4.093 23 C -0.137 4.137 24 C -0.124 4.124 25 C -0.139 4.139 26 H 0.235 0.765 27 H 0.144 0.856 28 H -0.234 1.234 29 H -0.209 1.209 30 H 0.151 0.849 31 H 0.163 0.837 32 H 0.169 0.831 33 H 0.147 0.853 34 H 0.254 0.746 35 H 0.128 0.872 36 H 0.083 0.917 37 H 0.250 0.750 38 H 0.099 0.901 39 H 0.146 0.854 40 H 0.167 0.833 41 H 0.173 0.827 42 H 0.164 0.836 43 H 0.160 0.840 Dipole moment (debyes) X Y Z Total from point charges 0.244 -3.020 -0.858 3.149 hybrid contribution -1.777 -0.216 0.739 1.937 sum -1.533 -3.236 -0.120 3.583 Atomic orbital electron populations 1.86576 1.18492 1.80355 1.50184 1.25217 0.83429 1.11681 0.98821 0.94051 0.90423 0.72295 0.76252 1.20449 0.99251 0.95050 0.96770 1.21119 0.98930 0.93971 0.97879 1.21523 0.96879 1.01002 0.93153 1.18917 0.99236 0.93873 0.93884 1.19148 0.95965 0.93772 0.93254 1.21402 0.98152 1.01342 0.92959 1.21265 0.96958 0.93148 0.97435 1.19989 1.04334 0.95327 0.95988 1.18630 0.78740 0.82374 0.85918 1.90753 1.42897 1.67141 1.45664 1.45544 1.56496 1.08344 1.23804 1.21959 0.97627 0.93749 0.86578 0.89790 1.24193 0.99325 0.98916 0.99696 1.22819 0.89860 0.96240 0.88575 0.89157 1.86307 1.20716 1.95912 1.34669 1.23483 0.96331 0.93267 1.04149 1.21424 0.94820 1.00597 0.92502 1.21451 1.00392 0.93640 0.98222 1.21473 0.99321 0.93619 0.98012 1.21173 0.98387 1.00445 0.93864 0.76496 0.85637 1.23378 1.20860 0.84893 0.83714 0.83118 0.85279 0.74597 0.87166 0.91716 0.74975 0.90145 0.85406 0.83288 0.82685 0.83632 0.83953 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.55 -1.05 12.83 -148.98 -1.91 -2.96 16 2 C -0.08 0.12 2.80 71.24 0.20 0.32 16 3 Si 0.76 -1.81 29.87 68.60 2.05 0.24 16 4 C -0.11 0.12 5.36 -19.82 -0.11 0.01 16 5 C -0.10 0.07 9.67 22.24 0.21 0.28 16 6 C -0.11 0.15 9.43 22.49 0.21 0.36 16 7 C -0.06 0.01 5.88 -20.05 -0.12 -0.11 16 8 C -0.02 -0.01 5.88 -20.00 -0.12 -0.13 16 9 C -0.12 -0.14 9.41 22.44 0.21 0.07 16 10 C -0.07 -0.35 9.58 22.49 0.22 -0.13 16 11 C -0.15 -0.78 5.88 -20.06 -0.12 -0.90 16 12 C 0.55 4.93 7.77 86.75 0.67 5.60 16 13 O -0.58 -9.80 15.95 -3.94 -0.06 -9.87 16 14 N -0.69 -2.17 5.09 -443.05 -2.25 -4.43 16 15 C 0.11 0.20 4.29 45.52 0.20 0.40 16 16 H 0.08 0.49 7.50 -2.39 -0.02 0.47 16 17 C -0.18 0.27 7.73 31.21 0.24 0.51 16 18 C 0.08 -0.39 5.28 31.21 0.16 -0.23 16 19 H 0.09 -0.71 8.14 -2.39 -0.02 -0.72 16 20 O -0.57 2.48 12.35 -148.98 -1.84 0.64 16 21 C -0.13 0.47 7.65 31.12 0.24 0.71 16 22 C -0.07 0.02 9.52 22.49 0.21 0.24 16 23 C -0.12 0.17 9.41 22.44 0.21 0.38 16 24 C -0.11 0.16 9.43 22.49 0.21 0.38 16 25 C -0.12 0.25 8.65 22.23 0.19 0.44 16 26 H 0.39 -1.33 8.70 -74.06 -0.64 -1.98 16 27 H 0.13 -0.37 7.96 -2.39 -0.02 -0.39 16 28 H -0.31 -1.76 7.11 99.48 0.71 -1.05 16 29 H -0.28 -0.34 7.00 99.48 0.70 0.36 16 30 H 0.13 -0.26 8.06 -2.91 -0.02 -0.28 16 31 H 0.15 -0.79 6.19 -2.91 -0.02 -0.81 16 32 H 0.15 -0.49 6.19 -2.91 -0.02 -0.51 16 33 H 0.13 0.81 7.64 -2.91 -0.02 0.79 16 34 H 0.41 -0.26 5.65 -92.71 -0.52 -0.78 16 35 H 0.11 -0.41 8.14 -2.39 -0.02 -0.43 16 36 H 0.06 0.08 8.14 -2.39 -0.02 0.07 16 37 H 0.40 -4.45 9.12 -74.06 -0.68 -5.13 16 38 H 0.08 -0.20 8.14 -2.38 -0.02 -0.22 16 39 H 0.13 -0.90 8.14 -2.39 -0.02 -0.92 16 40 H 0.15 -0.76 6.39 -2.91 -0.02 -0.78 16 41 H 0.16 -0.99 6.19 -2.91 -0.02 -1.01 16 42 H 0.15 -0.76 6.19 -2.91 -0.02 -0.78 16 43 H 0.14 -0.76 4.82 -2.91 -0.01 -0.78 16 Total: 0.00 -21.25 355.12 -1.81 -23.06 By element: Atomic # 1 Polarization: -14.16 SS G_CDS: -0.72 Total: -14.89 kcal Atomic # 6 Polarization: 5.27 SS G_CDS: 2.94 Total: 8.21 kcal Atomic # 7 Polarization: -2.17 SS G_CDS: -2.25 Total: -4.43 kcal Atomic # 8 Polarization: -8.38 SS G_CDS: -3.81 Total: -12.19 kcal Atomic # 14 Polarization: -1.81 SS G_CDS: 2.05 Total: 0.24 kcal Total: -21.25 -1.81 -23.06 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_7348514_13158362.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.634 kcal (2) G-P(sol) polarization free energy of solvation -21.250 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.884 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.808 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -23.057 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.692 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds