Wall clock time and date at job start Sun Mar 7 2021 22:00:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42899 * 1 3 3 Si 1.86300 * 109.47026 * 2 1 4 4 C 1.50704 * 109.47097 * 120.00179 * 2 1 3 5 5 C 1.34703 * 125.66339 * 64.71713 * 4 2 1 6 6 C 1.40970 * 107.02536 * 180.26371 * 5 4 2 7 7 C 1.35938 * 106.74380 * 359.97438 * 6 5 4 8 8 C 1.47814 * 125.92902 * 179.97438 * 7 6 5 9 9 C 1.39804 * 120.00376 * 359.97438 * 8 7 6 10 10 C 1.37806 * 120.24559 * 180.02562 * 9 8 7 11 11 C 1.38778 * 120.24874 * 359.96749 * 10 9 8 12 12 O 1.35650 * 120.00543 * 180.02562 * 11 10 9 13 13 C 1.40250 * 119.99006 * 0.02562 * 11 10 9 14 14 C 1.47570 * 120.11748 * 179.97438 * 13 11 10 15 15 O 1.21577 * 120.00345 * 359.97438 * 14 13 11 16 16 N 1.34776 * 119.99602 * 179.97438 * 14 13 11 17 17 C 1.46507 * 119.99891 * 180.02562 * 16 14 13 18 18 H 1.08999 * 112.84493 * 23.79942 * 17 16 14 19 19 C 1.53781 * 113.61516 * 155.00102 * 17 16 14 20 20 C 1.53785 * 87.07876 * 139.98100 * 19 17 16 21 21 H 1.08998 * 113.61470 * 89.19827 * 20 19 17 22 22 O 1.42900 * 113.61389 * 220.01977 * 20 19 17 23 23 C 1.53777 * 113.61331 * 252.50142 * 17 16 14 24 24 C 1.39217 * 119.99830 * 179.70055 * 8 7 6 25 25 O 1.34344 * 125.66222 * 245.02413 * 4 2 1 26 26 H 0.96701 * 114.00420 * 60.00120 * 1 2 3 27 27 H 1.09004 * 109.46801 * 239.99892 * 2 1 3 28 28 H 1.48494 * 109.99994 * 60.00070 * 3 2 1 29 29 H 1.48499 * 109.99866 * 181.31974 * 3 2 1 30 30 H 1.07999 * 126.48666 * 0.24102 * 5 4 2 31 31 H 1.08005 * 126.62692 * 180.02562 * 6 5 4 32 32 H 1.08008 * 119.87627 * 359.97438 * 9 8 7 33 33 H 1.08004 * 119.87979 * 179.97438 * 10 9 8 34 34 H 0.96702 * 113.99633 * 90.00749 * 12 11 10 35 35 H 0.97003 * 120.00706 * 359.97438 * 16 14 13 36 36 H 1.08999 * 113.61244 * 254.52516 * 19 17 16 37 37 H 1.09002 * 113.61556 * 25.34815 * 19 17 16 38 38 H 0.96695 * 113.99984 * 180.02562 * 22 20 19 39 39 H 1.09000 * 113.61552 * 334.56267 * 23 17 16 40 40 H 1.09001 * 113.62078 * 105.46770 * 23 17 16 41 41 H 1.07997 * 120.12277 * 359.97438 * 24 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4290 0.0000 0.0000 3 14 2.0500 1.7565 0.0000 4 6 1.9313 -0.7105 1.2305 5 6 1.7524 -2.0156 1.5118 6 6 2.3738 -2.2591 2.7535 7 6 2.9034 -1.0767 3.1650 8 6 3.6515 -0.8512 4.4198 9 6 3.8664 -1.9112 5.3056 10 6 4.5627 -1.7065 6.4771 11 6 5.0565 -0.4469 6.7859 12 8 5.7417 -0.2511 7.9401 13 6 4.8469 0.6237 5.9044 14 6 5.3702 1.9645 6.2303 15 8 5.9839 2.1427 7.2646 16 7 5.1679 2.9914 5.3812 17 6 5.6879 4.3224 5.7044 18 1 6.5323 4.2911 6.3929 19 6 5.9326 5.2049 4.4689 20 6 5.3708 6.3762 5.2919 21 1 6.1282 6.9085 5.8672 22 8 4.5280 7.2517 4.5401 23 6 4.5974 5.3281 6.1094 24 6 4.1471 0.4154 4.7167 25 8 2.6269 -0.1460 2.2317 26 1 -0.3934 0.4417 -0.7650 27 1 1.7923 -0.5139 -0.8900 28 1 1.5615 2.4679 1.2085 29 1 3.5345 1.7703 -0.0321 30 1 1.2313 -2.7385 0.9017 31 1 2.4208 -3.2029 3.2765 32 1 3.4845 -2.8940 5.0714 33 1 4.7249 -2.5295 7.1574 34 1 6.6955 -0.3884 7.8594 35 1 4.6786 2.8492 4.5558 36 1 6.9864 5.3163 4.2138 37 1 5.3156 4.9364 3.6114 38 1 4.1719 7.9906 5.0522 39 1 3.6143 5.0943 5.7008 40 1 4.5732 5.5392 7.1785 41 1 3.9865 1.2346 4.0315 There are 60 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 60 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_7348514_13259648.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 22:00:59 Heat of formation + Delta-G solvation = -80.476891 kcal Electronic energy + Delta-G solvation = -27902.915738 eV Core-core repulsion = 23717.583808 eV Total energy + Delta-G solvation = -4185.331930 eV No. of doubly occupied orbitals = 60 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 332.118 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -43.84127 -41.81683 -40.60797 -39.28972 -38.11331 -37.79124 -36.44125 -34.56379 -34.15651 -32.89401 -32.24412 -30.19205 -26.90760 -26.42388 -26.26045 -24.63158 -23.52844 -22.93559 -21.81386 -21.47114 -21.00885 -19.66714 -19.06362 -18.83929 -18.67386 -17.93502 -17.31419 -17.16702 -16.81599 -16.52767 -16.44371 -16.14805 -16.01763 -15.83387 -15.50388 -15.00317 -14.68000 -14.53335 -14.40634 -14.20460 -13.98655 -13.80708 -13.65123 -13.61741 -13.29434 -13.21741 -12.81261 -12.71056 -12.43483 -12.22752 -12.01761 -11.78297 -11.18785 -11.10276 -10.86920 -10.67492 -10.45712 -10.39500 -10.18913 -9.02446 -5.11241 -0.68089 -0.35615 0.63556 1.14219 1.33570 1.50243 1.61091 1.72611 1.86774 1.96688 2.49435 2.99259 3.11134 3.21635 3.26636 3.38967 3.49999 3.54796 3.69727 3.70636 3.72801 3.83670 3.90854 3.95377 4.07220 4.23460 4.35212 4.38865 4.52011 4.54446 4.57042 4.62483 4.68912 4.78056 4.81023 4.83713 4.90660 4.96861 5.02842 5.09095 5.33151 5.35217 5.40411 5.86939 6.23021 6.64579 6.78700 6.81802 6.93969 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.561 6.561 2 C -0.038 4.038 3 Si 0.797 3.203 4 C -0.034 4.034 5 C -0.173 4.173 6 C -0.183 4.183 7 C 0.012 3.988 8 C -0.044 4.044 9 C -0.041 4.041 10 C -0.142 4.142 11 C 0.168 3.832 12 O -0.492 6.492 13 C -0.181 4.181 14 C 0.558 3.442 15 O -0.553 6.553 16 N -0.710 5.710 17 C 0.120 3.880 18 H 0.114 0.886 19 C -0.134 4.134 20 C 0.086 3.914 21 H 0.107 0.893 22 O -0.576 6.576 23 C -0.182 4.182 24 C -0.059 4.059 25 O -0.195 6.195 26 H 0.413 0.587 27 H 0.126 0.874 28 H -0.306 1.306 29 H -0.290 1.290 30 H 0.173 0.827 31 H 0.184 0.816 32 H 0.171 0.829 33 H 0.171 0.829 34 H 0.412 0.588 35 H 0.407 0.593 36 H 0.095 0.905 37 H 0.090 0.910 38 H 0.397 0.603 39 H 0.084 0.916 40 H 0.076 0.924 41 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.832 -1.422 -6.663 6.864 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.373 6.373 2 C -0.147 4.147 3 Si 0.703 3.297 4 C -0.083 4.083 5 C -0.192 4.192 6 C -0.202 4.202 7 C -0.037 4.037 8 C -0.044 4.044 9 C -0.059 4.059 10 C -0.160 4.160 11 C 0.121 3.879 12 O -0.306 6.306 13 C -0.184 4.184 14 C 0.347 3.653 15 O -0.432 6.432 16 N -0.361 5.361 17 C 0.015 3.985 18 H 0.132 0.868 19 C -0.172 4.172 20 C 0.026 3.974 21 H 0.125 0.875 22 O -0.385 6.385 23 C -0.221 4.221 24 C -0.078 4.078 25 O -0.094 6.094 26 H 0.266 0.734 27 H 0.143 0.857 28 H -0.234 1.234 29 H -0.218 1.218 30 H 0.190 0.810 31 H 0.201 0.799 32 H 0.188 0.812 33 H 0.189 0.811 34 H 0.273 0.727 35 H 0.243 0.757 36 H 0.113 0.887 37 H 0.109 0.891 38 H 0.248 0.752 39 H 0.102 0.898 40 H 0.094 0.906 41 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges -0.133 -0.978 -5.209 5.301 hybrid contribution 0.037 -0.206 0.309 0.373 sum -0.097 -1.184 -4.899 5.041 Atomic orbital electron populations 1.86415 1.16202 1.82550 1.52091 1.23948 0.86418 1.11613 0.92727 0.94366 0.77248 0.74089 0.84045 1.22113 1.00876 0.93607 0.91706 1.21869 1.03317 0.95785 0.98258 1.22241 1.01583 0.98972 0.97412 1.20611 1.04285 0.88036 0.90739 1.17762 1.00387 0.94616 0.91675 1.21455 0.94129 0.99119 0.91227 1.21632 0.99939 0.96516 0.97872 1.18849 0.93473 0.91298 0.84236 1.84705 1.25261 1.92303 1.28291 1.20268 1.06589 0.94536 0.97037 1.18275 0.79174 0.84607 0.83269 1.90791 1.41995 1.84753 1.25631 1.45873 1.57379 1.08898 1.23974 1.22309 0.97791 0.79707 0.98675 0.86808 1.23454 1.03113 0.93593 0.97077 1.23115 0.92599 0.88912 0.92742 0.87515 1.86469 1.67455 1.42905 1.41642 1.24173 0.99272 0.97049 1.01589 1.21298 0.94631 0.97086 0.94765 1.83930 1.59062 1.39192 1.27187 0.73385 0.85653 1.23410 1.21759 0.80968 0.79898 0.81182 0.81124 0.72687 0.75653 0.88659 0.89117 0.75209 0.89760 0.90551 0.84957 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.56 1.12 12.86 -148.98 -1.92 -0.79 16 2 C -0.04 0.07 2.97 71.24 0.21 0.28 16 3 Si 0.80 -1.37 32.11 68.60 2.20 0.83 16 4 C -0.03 -0.18 6.24 24.88 0.16 -0.02 16 5 C -0.17 -0.55 10.78 22.13 0.24 -0.31 16 6 C -0.18 -0.38 10.26 22.41 0.23 -0.15 16 7 C 0.01 0.07 7.03 24.27 0.17 0.24 16 8 C -0.04 -0.16 5.87 -20.13 -0.12 -0.27 16 9 C -0.04 0.06 9.54 22.55 0.22 0.27 16 10 C -0.14 0.09 9.96 22.30 0.22 0.31 16 11 C 0.17 0.84 6.72 22.89 0.15 1.00 16 12 O -0.49 -3.13 11.55 -68.66 -0.79 -3.92 16 13 C -0.18 -1.21 5.88 -20.04 -0.12 -1.33 16 14 C 0.56 5.32 7.76 86.71 0.67 5.99 16 15 O -0.55 -8.60 14.74 17.03 0.25 -8.34 16 16 N -0.71 -3.30 5.30 -443.17 -2.35 -5.65 16 17 C 0.12 0.35 4.24 45.52 0.19 0.55 16 18 H 0.11 0.54 7.46 -2.39 -0.02 0.53 16 19 C -0.13 -0.02 7.66 31.12 0.24 0.22 16 20 C 0.09 -0.04 5.21 31.12 0.16 0.12 16 21 H 0.11 -0.43 8.14 -2.39 -0.02 -0.45 16 22 O -0.58 -0.83 13.67 -148.98 -2.04 -2.87 16 23 C -0.18 -0.35 7.71 31.12 0.24 -0.11 16 24 C -0.06 -0.28 9.20 22.79 0.21 -0.07 16 25 O -0.19 -1.65 8.80 -6.52 -0.06 -1.71 16 26 H 0.41 -5.57 8.74 -74.06 -0.65 -6.21 16 27 H 0.13 -1.00 7.96 -2.38 -0.02 -1.02 16 28 H -0.31 -2.36 7.11 99.48 0.71 -1.65 16 29 H -0.29 -1.27 7.11 99.48 0.71 -0.56 16 30 H 0.17 -0.18 8.06 -2.91 -0.02 -0.20 16 31 H 0.18 -0.83 7.25 -2.91 -0.02 -0.86 16 32 H 0.17 -1.30 6.96 -2.91 -0.02 -1.32 16 33 H 0.17 -0.98 8.06 -2.91 -0.02 -1.00 16 34 H 0.41 -0.51 9.06 -74.06 -0.67 -1.18 16 35 H 0.41 0.63 6.75 -92.71 -0.63 0.01 16 36 H 0.09 -0.19 8.14 -2.39 -0.02 -0.21 16 37 H 0.09 0.09 8.12 -2.39 -0.02 0.07 16 38 H 0.40 -2.61 9.12 -74.06 -0.68 -3.28 16 39 H 0.08 0.32 8.14 -2.39 -0.02 0.30 16 40 H 0.08 0.16 8.14 -2.39 -0.02 0.14 16 41 H 0.13 0.44 6.24 -2.91 -0.02 0.42 16 Total: 0.00 -29.15 356.62 -3.07 -32.22 By element: Atomic # 1 Polarization: -15.03 SS G_CDS: -1.45 Total: -16.48 kcal Atomic # 6 Polarization: 3.63 SS G_CDS: 3.08 Total: 6.70 kcal Atomic # 7 Polarization: -3.30 SS G_CDS: -2.35 Total: -5.65 kcal Atomic # 8 Polarization: -13.08 SS G_CDS: -4.55 Total: -17.63 kcal Atomic # 14 Polarization: -1.37 SS G_CDS: 2.20 Total: 0.83 kcal Total: -29.15 -3.07 -32.22 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_7348514_13259648.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -48.258 kcal (2) G-P(sol) polarization free energy of solvation -29.151 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -77.409 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.068 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -32.219 kcal (6) G-S(sol) free energy of system = (1) + (5) -80.477 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds