Wall clock time and date at job start Sun Mar 7 2021 22:01:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42896 * 1 3 3 Si 1.86299 * 109.47403 * 2 1 4 4 C 1.50704 * 109.46662 * 239.99934 * 2 1 3 5 5 C 1.33740 * 125.12213 * 299.98461 * 4 2 1 6 6 C 1.37799 * 115.07997 * 180.02562 * 5 4 2 7 7 C 1.34977 * 114.70317 * 359.97438 * 6 5 4 8 8 C 1.47557 * 125.27604 * 180.02562 * 7 6 5 9 9 C 1.39822 * 120.00005 * 359.74483 * 8 7 6 10 10 C 1.36566 * 120.00366 * 179.76315 * 9 8 7 11 11 C 1.39836 * 119.99518 * 0.49404 * 10 9 8 12 12 C 1.47557 * 119.99996 * 179.78112 * 11 10 9 13 13 O 1.21598 * 120.00019 * 179.97438 * 12 11 10 14 14 N 1.34776 * 120.00052 * 359.97438 * 12 11 10 15 15 C 1.46503 * 120.00126 * 179.97438 * 14 12 11 16 16 H 1.08998 * 112.84633 * 23.79774 * 15 14 12 17 17 C 1.53775 * 113.61353 * 154.99559 * 15 14 12 18 18 C 1.53785 * 87.07959 * 139.98167 * 17 15 14 19 19 H 1.09001 * 113.62047 * 89.11312 * 18 17 15 20 20 O 1.42903 * 113.61338 * 219.93682 * 18 17 15 21 21 C 1.53779 * 113.61256 * 252.49774 * 15 14 12 22 22 C 1.39836 * 119.99630 * 359.76618 * 11 10 9 23 23 C 1.36560 * 120.00251 * 359.97438 * 22 11 10 24 24 S 1.75859 * 125.11473 * 120.02849 * 4 2 1 25 25 H 0.96703 * 113.99623 * 300.00260 * 1 2 3 26 26 H 1.08998 * 109.47237 * 120.00471 * 2 1 3 27 27 H 1.48494 * 109.99803 * 178.68296 * 3 2 1 28 28 H 1.48502 * 109.99849 * 300.00102 * 3 2 1 29 29 H 1.07994 * 122.45710 * 0.02562 * 5 4 2 30 30 H 1.08001 * 122.64901 * 179.97438 * 6 5 4 31 31 H 1.07995 * 119.99857 * 0.02562 * 9 8 7 32 32 H 1.07995 * 120.00522 * 180.25805 * 10 9 8 33 33 H 0.97000 * 119.99808 * 359.97438 * 14 12 11 34 34 H 1.08998 * 113.61674 * 254.52614 * 17 15 14 35 35 H 1.08995 * 113.61886 * 25.43365 * 17 15 14 36 36 H 0.96707 * 113.99725 * 179.97438 * 20 18 17 37 37 H 1.08999 * 113.61305 * 334.55883 * 21 15 14 38 38 H 1.09000 * 113.62074 * 105.46698 * 21 15 14 39 39 H 1.07997 * 119.99603 * 180.02562 * 22 11 10 40 40 H 1.07995 * 119.99963 * 180.02562 * 23 22 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4290 0.0000 0.0000 3 14 2.0500 1.7564 0.0000 4 6 1.9312 -0.7105 -1.2305 5 6 1.6722 -1.9848 -1.5428 6 6 2.2380 -2.4244 -2.7198 7 6 2.9671 -1.4972 -3.3760 8 6 3.6722 -1.7153 -4.6538 9 6 3.6187 -2.9657 -5.2771 10 6 4.2672 -3.1663 -6.4622 11 6 4.9933 -2.1240 -7.0469 12 6 5.6980 -2.3420 -8.3248 13 8 6.3289 -1.4355 -8.8335 14 7 5.6423 -3.5458 -8.9283 15 6 6.3415 -3.7621 -10.1974 16 1 7.1718 -3.0717 -10.3461 17 6 6.7094 -5.2328 -10.4551 18 6 6.3140 -4.9927 -11.9218 19 1 7.1363 -4.6387 -12.5435 20 8 5.6045 -6.0851 -12.5095 21 6 5.4004 -3.8669 -11.4091 22 6 5.0511 -0.8750 -6.4206 23 6 4.3983 -0.6731 -5.2383 24 16 2.9470 0.0112 -2.4714 25 1 -0.3933 0.4418 0.7651 26 1 1.7923 -0.5139 0.8899 27 1 3.5346 1.7701 0.0321 28 1 1.5615 2.4679 -1.2085 29 1 1.0642 -2.6225 -0.9183 30 1 2.1084 -3.4313 -3.0882 31 1 3.0611 -3.7717 -4.8237 32 1 4.2225 -4.1308 -6.9458 33 1 5.1393 -4.2690 -8.5223 34 1 7.7691 -5.4483 -10.3183 35 1 6.0622 -5.9417 -9.9389 36 1 5.3527 -5.9398 -13.4318 37 1 4.3954 -4.2025 -11.1536 38 1 5.4033 -2.9797 -12.0423 39 1 5.6115 -0.0699 -6.8724 40 1 4.4427 0.2916 -4.7549 There are 57 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 57 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_22_7348514_13308390.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 22:01:27 Heat of formation + Delta-G solvation = -23.188845 kcal Electronic energy + Delta-G solvation = -24197.448620 eV Core-core repulsion = 20457.353757 eV Total energy + Delta-G solvation = -3740.094863 eV No. of doubly occupied orbitals = 57 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 332.091 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -41.53994 -40.46155 -39.48297 -38.83447 -37.45532 -36.40928 -34.35329 -33.30491 -32.23172 -30.58228 -27.45055 -26.87635 -25.56101 -24.36374 -23.88129 -23.22429 -21.64002 -21.07263 -20.15161 -19.06087 -18.76402 -18.60734 -18.28613 -17.11129 -17.03984 -16.48576 -16.19123 -16.01079 -15.93506 -15.61691 -15.41369 -15.02404 -14.86914 -14.64006 -14.39423 -14.33803 -14.12310 -13.71706 -13.59653 -13.40187 -13.21473 -13.11168 -12.76634 -12.65814 -12.36841 -12.31428 -12.11339 -11.81507 -11.78055 -11.05313 -10.84043 -10.80863 -10.41834 -10.24014 -10.10504 -9.58309 -9.04954 -5.31186 -0.91225 0.22531 0.29476 0.40151 0.73928 1.12063 1.47629 1.58624 1.84859 1.98221 2.02500 2.81097 3.17543 3.26255 3.33015 3.40873 3.54500 3.60715 3.67292 3.73006 3.73981 3.77427 3.84612 4.12662 4.24076 4.26028 4.38348 4.39726 4.49250 4.57137 4.61084 4.63644 4.82578 4.84158 4.87332 4.95038 5.02767 5.06690 5.18629 5.23959 5.26346 5.42755 5.43780 5.68444 6.40838 6.47282 6.59863 7.14951 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.543 6.543 2 C -0.034 4.034 3 Si 0.668 3.332 4 C -0.174 4.174 5 C -0.099 4.099 6 C -0.118 4.118 7 C -0.145 4.145 8 C 0.014 3.986 9 C -0.109 4.109 10 C -0.077 4.077 11 C -0.137 4.137 12 C 0.561 3.439 13 O -0.534 6.534 14 N -0.714 5.714 15 C 0.124 3.876 16 H 0.121 0.879 17 C -0.137 4.137 18 C 0.080 3.920 19 H 0.088 0.912 20 O -0.558 6.558 21 C -0.183 4.183 22 C -0.048 4.048 23 C -0.121 4.121 24 S 0.112 5.888 25 H 0.385 0.615 26 H 0.085 0.915 27 H -0.238 1.238 28 H -0.235 1.235 29 H 0.148 0.852 30 H 0.148 0.852 31 H 0.135 0.865 32 H 0.131 0.869 33 H 0.402 0.598 34 H 0.084 0.916 35 H 0.096 0.904 36 H 0.382 0.618 37 H 0.094 0.906 38 H 0.076 0.924 39 H 0.142 0.858 40 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.781 -1.491 3.509 4.208 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.349 6.349 2 C -0.147 4.147 3 Si 0.567 3.433 4 C -0.291 4.291 5 C -0.129 4.129 6 C -0.148 4.148 7 C -0.262 4.262 8 C 0.012 3.988 9 C -0.129 4.129 10 C -0.096 4.096 11 C -0.141 4.141 12 C 0.349 3.651 13 O -0.411 6.411 14 N -0.366 5.366 15 C 0.019 3.981 16 H 0.139 0.861 17 C -0.175 4.175 18 C 0.020 3.980 19 H 0.106 0.894 20 O -0.364 6.364 21 C -0.222 4.222 22 C -0.067 4.067 23 C -0.140 4.140 24 S 0.379 5.621 25 H 0.233 0.767 26 H 0.103 0.897 27 H -0.162 1.162 28 H -0.158 1.158 29 H 0.166 0.834 30 H 0.165 0.835 31 H 0.153 0.847 32 H 0.149 0.851 33 H 0.238 0.762 34 H 0.103 0.897 35 H 0.114 0.886 36 H 0.230 0.770 37 H 0.112 0.888 38 H 0.095 0.905 39 H 0.160 0.840 40 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges -0.017 0.663 2.562 2.646 hybrid contribution -1.031 -2.020 -0.193 2.276 sum -1.048 -1.357 2.369 2.924 Atomic orbital electron populations 1.86509 1.16766 1.81814 1.49849 1.23974 0.85876 1.09637 0.95255 0.94897 0.82005 0.78201 0.88216 1.23739 1.06687 0.97807 1.00850 1.19991 1.00736 0.94804 0.97403 1.20385 0.98577 1.00539 0.95330 1.23094 1.06103 0.97704 0.99309 1.18301 0.95176 0.94125 0.91190 1.20871 1.00277 0.96286 0.95462 1.20967 0.95344 0.98161 0.95128 1.20004 1.02190 0.95595 0.96292 1.18242 0.80188 0.82466 0.84160 1.90804 1.42323 1.42200 1.65758 1.45828 1.53432 1.13451 1.23876 1.22253 0.96143 0.97208 0.82489 0.86102 1.23469 1.02978 0.96073 0.94995 1.23078 0.94185 0.86940 0.93809 0.89401 1.86515 1.76918 1.41575 1.31363 1.24211 1.00134 0.99845 0.98010 1.20938 0.95952 0.96287 0.93498 1.20967 0.98065 0.98708 0.96234 1.84231 1.49356 1.13522 1.14972 0.76687 0.89718 1.16225 1.15847 0.83439 0.83466 0.84705 0.85137 0.76208 0.89741 0.88572 0.77034 0.88788 0.90478 0.84045 0.85333 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.54 0.13 12.83 -35.23 -0.45 -0.32 16 2 C -0.03 0.01 2.95 36.01 0.11 0.12 16 3 Si 0.67 -0.70 30.96 -169.99 -5.26 -5.96 16 4 C -0.17 -0.36 5.76 -35.88 -0.21 -0.57 16 5 C -0.10 -0.15 10.00 -41.32 -0.41 -0.56 16 6 C -0.12 -0.13 9.64 -40.90 -0.39 -0.52 16 7 C -0.15 -0.30 6.37 -36.94 -0.24 -0.54 16 8 C 0.01 0.02 5.88 -104.91 -0.62 -0.59 16 9 C -0.11 0.00 9.48 -39.59 -0.38 -0.37 16 10 C -0.08 0.03 9.48 -39.59 -0.38 -0.34 16 11 C -0.14 -0.24 5.88 -104.90 -0.62 -0.86 16 12 C 0.56 1.64 7.76 -12.46 -0.10 1.54 16 13 O -0.53 -3.47 15.93 5.28 0.08 -3.39 16 14 N -0.71 -0.06 5.30 -54.05 -0.29 -0.35 16 15 C 0.12 -0.01 4.24 -67.12 -0.28 -0.29 16 16 H 0.12 0.13 7.46 -51.93 -0.39 -0.25 16 17 C -0.14 0.15 7.66 -25.92 -0.20 -0.05 16 18 C 0.08 -0.08 5.21 -25.91 -0.14 -0.21 16 19 H 0.09 -0.19 8.14 -51.93 -0.42 -0.62 16 20 O -0.56 -0.06 13.67 -35.23 -0.48 -0.54 16 21 C -0.18 0.10 7.71 -25.92 -0.20 -0.10 16 22 C -0.05 -0.11 9.53 -39.59 -0.38 -0.48 16 23 C -0.12 -0.22 9.54 -39.59 -0.38 -0.60 16 24 S 0.11 0.29 19.46 -107.50 -2.09 -1.80 16 25 H 0.38 -2.08 8.74 45.56 0.40 -1.68 16 26 H 0.09 -0.19 7.96 -51.93 -0.41 -0.61 16 27 H -0.24 -0.29 7.11 56.52 0.40 0.12 16 28 H -0.24 -0.51 7.11 56.52 0.40 -0.10 16 29 H 0.15 0.01 8.06 -52.49 -0.42 -0.42 16 30 H 0.15 -0.20 6.88 -52.49 -0.36 -0.56 16 31 H 0.14 -0.30 6.74 -52.49 -0.35 -0.66 16 32 H 0.13 -0.45 6.38 -52.49 -0.33 -0.78 16 33 H 0.40 -0.96 6.74 -40.82 -0.28 -1.24 16 34 H 0.08 -0.13 8.14 -51.93 -0.42 -0.56 16 35 H 0.10 -0.11 8.12 -51.93 -0.42 -0.53 16 36 H 0.38 -1.43 9.12 45.56 0.42 -1.01 16 37 H 0.09 -0.02 8.14 -51.93 -0.42 -0.44 16 38 H 0.08 -0.02 8.14 -51.93 -0.42 -0.45 16 39 H 0.14 0.31 7.64 -52.49 -0.40 -0.09 16 40 H 0.13 0.13 7.26 -52.49 -0.38 -0.25 16 LS Contribution 353.14 15.07 5.32 5.32 Total: 0.00 -9.80 353.14 -11.79 -21.59 By element: Atomic # 1 Polarization: -6.30 SS G_CDS: -3.83 Total: -10.13 kcal Atomic # 6 Polarization: 0.37 SS G_CDS: -4.80 Total: -4.43 kcal Atomic # 7 Polarization: -0.06 SS G_CDS: -0.29 Total: -0.35 kcal Atomic # 8 Polarization: -3.40 SS G_CDS: -0.85 Total: -4.25 kcal Atomic # 14 Polarization: -0.70 SS G_CDS: -5.26 Total: -5.96 kcal Atomic # 16 Polarization: 0.29 SS G_CDS: -2.09 Total: -1.80 kcal Total LS contribution 5.32 Total: 5.32 kcal Total: -9.80 -11.79 -21.59 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_7348514_13308390.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.595 kcal (2) G-P(sol) polarization free energy of solvation -9.801 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.396 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.793 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -21.594 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.189 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds