Wall clock time and date at job start Sun Mar 7 2021 22:01:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42896 * 1 3 3 Si 1.86299 * 109.47403 * 2 1 4 4 C 1.50704 * 109.46662 * 239.99934 * 2 1 3 5 5 C 1.33740 * 125.12213 * 299.98461 * 4 2 1 6 6 C 1.37799 * 115.07997 * 180.02562 * 5 4 2 7 7 C 1.34977 * 114.70317 * 359.97438 * 6 5 4 8 8 C 1.47557 * 125.27604 * 180.02562 * 7 6 5 9 9 C 1.39822 * 120.00005 * 359.74483 * 8 7 6 10 10 C 1.36566 * 120.00366 * 179.76315 * 9 8 7 11 11 C 1.39836 * 119.99518 * 0.49404 * 10 9 8 12 12 C 1.47557 * 119.99996 * 179.78112 * 11 10 9 13 13 O 1.21598 * 120.00019 * 179.97438 * 12 11 10 14 14 N 1.34776 * 120.00052 * 359.97438 * 12 11 10 15 15 C 1.46503 * 120.00126 * 179.97438 * 14 12 11 16 16 H 1.08998 * 112.84633 * 23.79774 * 15 14 12 17 17 C 1.53775 * 113.61353 * 154.99559 * 15 14 12 18 18 C 1.53785 * 87.07959 * 139.98167 * 17 15 14 19 19 H 1.09001 * 113.62047 * 89.11312 * 18 17 15 20 20 O 1.42903 * 113.61338 * 219.93682 * 18 17 15 21 21 C 1.53779 * 113.61256 * 252.49774 * 15 14 12 22 22 C 1.39836 * 119.99630 * 359.76618 * 11 10 9 23 23 C 1.36560 * 120.00251 * 359.97438 * 22 11 10 24 24 S 1.75859 * 125.11473 * 120.02849 * 4 2 1 25 25 H 0.96703 * 113.99623 * 300.00260 * 1 2 3 26 26 H 1.08998 * 109.47237 * 120.00471 * 2 1 3 27 27 H 1.48494 * 109.99803 * 178.68296 * 3 2 1 28 28 H 1.48502 * 109.99849 * 300.00102 * 3 2 1 29 29 H 1.07994 * 122.45710 * 0.02562 * 5 4 2 30 30 H 1.08001 * 122.64901 * 179.97438 * 6 5 4 31 31 H 1.07995 * 119.99857 * 0.02562 * 9 8 7 32 32 H 1.07995 * 120.00522 * 180.25805 * 10 9 8 33 33 H 0.97000 * 119.99808 * 359.97438 * 14 12 11 34 34 H 1.08998 * 113.61674 * 254.52614 * 17 15 14 35 35 H 1.08995 * 113.61886 * 25.43365 * 17 15 14 36 36 H 0.96707 * 113.99725 * 179.97438 * 20 18 17 37 37 H 1.08999 * 113.61305 * 334.55883 * 21 15 14 38 38 H 1.09000 * 113.62074 * 105.46698 * 21 15 14 39 39 H 1.07997 * 119.99603 * 180.02562 * 22 11 10 40 40 H 1.07995 * 119.99963 * 180.02562 * 23 22 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4290 0.0000 0.0000 3 14 2.0500 1.7564 0.0000 4 6 1.9312 -0.7105 -1.2305 5 6 1.6722 -1.9848 -1.5428 6 6 2.2380 -2.4244 -2.7198 7 6 2.9671 -1.4972 -3.3760 8 6 3.6722 -1.7153 -4.6538 9 6 3.6187 -2.9657 -5.2771 10 6 4.2672 -3.1663 -6.4622 11 6 4.9933 -2.1240 -7.0469 12 6 5.6980 -2.3420 -8.3248 13 8 6.3289 -1.4355 -8.8335 14 7 5.6423 -3.5458 -8.9283 15 6 6.3415 -3.7621 -10.1974 16 1 7.1718 -3.0717 -10.3461 17 6 6.7094 -5.2328 -10.4551 18 6 6.3140 -4.9927 -11.9218 19 1 7.1363 -4.6387 -12.5435 20 8 5.6045 -6.0851 -12.5095 21 6 5.4004 -3.8669 -11.4091 22 6 5.0511 -0.8750 -6.4206 23 6 4.3983 -0.6731 -5.2383 24 16 2.9470 0.0112 -2.4714 25 1 -0.3933 0.4418 0.7651 26 1 1.7923 -0.5139 0.8899 27 1 3.5346 1.7701 0.0321 28 1 1.5615 2.4679 -1.2085 29 1 1.0642 -2.6225 -0.9183 30 1 2.1084 -3.4313 -3.0882 31 1 3.0611 -3.7717 -4.8237 32 1 4.2225 -4.1308 -6.9458 33 1 5.1393 -4.2690 -8.5223 34 1 7.7691 -5.4483 -10.3183 35 1 6.0622 -5.9417 -9.9389 36 1 5.3527 -5.9398 -13.4318 37 1 4.3954 -4.2025 -11.1536 38 1 5.4033 -2.9797 -12.0423 39 1 5.6115 -0.0699 -6.8724 40 1 4.4427 0.2916 -4.7549 There are 57 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 57 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_7348514_13308390.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 22:01:27 Heat of formation + Delta-G solvation = -24.946219 kcal Electronic energy + Delta-G solvation = -24197.524826 eV Core-core repulsion = 20457.353757 eV Total energy + Delta-G solvation = -3740.171068 eV No. of doubly occupied orbitals = 57 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 332.091 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -41.64738 -40.47220 -39.55640 -38.89475 -37.42265 -36.43044 -34.45684 -33.35916 -32.28065 -30.61776 -27.50250 -26.81503 -25.58794 -24.38444 -23.93131 -23.27928 -21.77321 -21.04367 -20.20672 -19.08962 -18.76426 -18.57184 -18.30885 -17.17400 -17.12414 -16.48763 -16.22670 -16.15669 -15.95555 -15.66916 -15.46691 -15.05092 -14.88151 -14.68554 -14.46975 -14.36944 -14.17485 -13.71232 -13.54696 -13.46007 -13.27498 -13.18966 -12.76809 -12.69274 -12.40486 -12.33202 -12.17993 -11.85750 -11.76334 -11.21973 -10.89756 -10.82938 -10.37393 -10.29108 -10.18871 -9.73876 -9.13034 -5.27156 -1.00057 0.13460 0.23763 0.30395 0.66133 1.15902 1.43939 1.54006 1.85546 1.87387 1.95728 2.72329 3.27322 3.30410 3.37906 3.41240 3.57006 3.61489 3.67657 3.73862 3.77948 3.81354 3.92479 4.09884 4.21478 4.32449 4.41524 4.42924 4.47758 4.53364 4.67527 4.71590 4.82105 4.89647 4.90638 4.92484 4.99735 5.04822 5.12457 5.17914 5.22154 5.38683 5.41629 5.63221 6.36318 6.83231 6.83730 7.02474 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.559 6.559 2 C -0.036 4.036 3 Si 0.748 3.252 4 C -0.186 4.186 5 C -0.104 4.104 6 C -0.112 4.112 7 C -0.153 4.153 8 C 0.005 3.995 9 C -0.105 4.105 10 C -0.065 4.065 11 C -0.150 4.150 12 C 0.559 3.441 13 O -0.580 6.580 14 N -0.699 5.699 15 C 0.118 3.882 16 H 0.106 0.894 17 C -0.131 4.131 18 C 0.081 3.919 19 H 0.100 0.900 20 O -0.576 6.576 21 C -0.179 4.179 22 C -0.062 4.062 23 C -0.132 4.132 24 S 0.058 5.942 25 H 0.407 0.593 26 H 0.112 0.888 27 H -0.273 1.273 28 H -0.286 1.286 29 H 0.166 0.834 30 H 0.177 0.823 31 H 0.165 0.835 32 H 0.166 0.834 33 H 0.416 0.584 34 H 0.090 0.910 35 H 0.101 0.899 36 H 0.397 0.603 37 H 0.093 0.907 38 H 0.071 0.929 39 H 0.129 0.871 40 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.927 -4.049 4.297 6.590 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.370 6.370 2 C -0.149 4.149 3 Si 0.653 3.347 4 C -0.303 4.303 5 C -0.134 4.134 6 C -0.143 4.143 7 C -0.270 4.270 8 C 0.003 3.997 9 C -0.125 4.125 10 C -0.084 4.084 11 C -0.153 4.153 12 C 0.348 3.652 13 O -0.461 6.461 14 N -0.351 5.351 15 C 0.013 3.987 16 H 0.124 0.876 17 C -0.169 4.169 18 C 0.022 3.978 19 H 0.118 0.882 20 O -0.384 6.384 21 C -0.218 4.218 22 C -0.081 4.081 23 C -0.151 4.151 24 S 0.324 5.676 25 H 0.259 0.741 26 H 0.129 0.871 27 H -0.199 1.199 28 H -0.213 1.213 29 H 0.183 0.817 30 H 0.194 0.806 31 H 0.182 0.818 32 H 0.183 0.817 33 H 0.254 0.746 34 H 0.109 0.891 35 H 0.120 0.880 36 H 0.247 0.753 37 H 0.111 0.889 38 H 0.090 0.910 39 H 0.147 0.853 40 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges -1.196 -1.935 3.372 4.068 hybrid contribution -0.702 -1.219 -0.477 1.486 sum -1.899 -3.155 2.895 4.684 Atomic orbital electron populations 1.86454 1.16553 1.82334 1.51645 1.24028 0.86149 1.09494 0.95209 0.94121 0.78724 0.76333 0.85516 1.24107 1.06606 0.98298 1.01265 1.20293 1.00618 0.94722 0.97721 1.20741 0.97262 1.01436 0.94814 1.23175 1.06997 0.97184 0.99622 1.18476 0.95137 0.94826 0.91266 1.21213 0.99901 0.96131 0.95248 1.21292 0.93627 0.98714 0.94735 1.20034 1.03066 0.96116 0.96106 1.18470 0.79700 0.82636 0.84416 1.90777 1.44504 1.43785 1.67021 1.45737 1.52765 1.12924 1.23632 1.22269 0.96030 0.97852 0.82575 0.87629 1.23443 1.03495 0.94955 0.94971 1.23120 0.94188 0.86430 0.94082 0.88235 1.86468 1.77097 1.42001 1.32803 1.24170 1.00068 0.99954 0.97628 1.20920 0.96545 0.96701 0.93959 1.20982 0.98700 0.99121 0.96314 1.84456 1.50829 1.15524 1.16814 0.74127 0.87052 1.19950 1.21260 0.81671 0.80615 0.81751 0.81696 0.74554 0.89121 0.88042 0.75309 0.88870 0.91010 0.85262 0.85702 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.56 0.91 12.83 -148.98 -1.91 -1.00 16 2 C -0.04 0.05 2.95 71.24 0.21 0.26 16 3 Si 0.75 -0.86 30.96 68.60 2.12 1.27 16 4 C -0.19 -0.76 5.76 24.66 0.14 -0.62 16 5 C -0.10 -0.18 10.00 21.14 0.21 0.03 16 6 C -0.11 -0.09 9.64 21.42 0.21 0.12 16 7 C -0.15 -0.68 6.37 23.98 0.15 -0.52 16 8 C 0.01 0.02 5.88 -20.05 -0.12 -0.10 16 9 C -0.11 0.18 9.48 22.26 0.21 0.39 16 10 C -0.07 0.15 9.48 22.27 0.21 0.36 16 11 C -0.15 -0.64 5.88 -20.05 -0.12 -0.76 16 12 C 0.56 3.89 7.76 86.70 0.67 4.56 16 13 O -0.58 -8.98 15.93 -4.02 -0.06 -9.04 16 14 N -0.70 -0.03 5.30 -443.18 -2.35 -2.38 16 15 C 0.12 0.02 4.24 45.51 0.19 0.21 16 16 H 0.11 0.38 7.46 -2.39 -0.02 0.37 16 17 C -0.13 0.38 7.66 31.12 0.24 0.62 16 18 C 0.08 -0.21 5.21 31.12 0.16 -0.04 16 19 H 0.10 -0.50 8.14 -2.39 -0.02 -0.52 16 20 O -0.58 0.42 13.67 -148.98 -2.04 -1.62 16 21 C -0.18 0.19 7.71 31.12 0.24 0.43 16 22 C -0.06 -0.42 9.53 22.26 0.21 -0.21 16 23 C -0.13 -0.77 9.54 22.26 0.21 -0.55 16 24 S 0.06 0.40 19.46 -56.49 -1.10 -0.70 16 25 H 0.41 -5.02 8.74 -74.05 -0.65 -5.67 16 26 H 0.11 -0.72 7.96 -2.39 -0.02 -0.74 16 27 H -0.27 -1.18 7.11 99.48 0.71 -0.48 16 28 H -0.29 -2.02 7.11 99.48 0.71 -1.31 16 29 H 0.17 -0.35 8.06 -2.91 -0.02 -0.37 16 30 H 0.18 -1.01 6.88 -2.91 -0.02 -1.03 16 31 H 0.17 -1.30 6.74 -2.91 -0.02 -1.32 16 32 H 0.17 -1.62 6.38 -2.91 -0.02 -1.64 16 33 H 0.42 -2.58 6.74 -92.71 -0.62 -3.20 16 34 H 0.09 -0.36 8.14 -2.39 -0.02 -0.38 16 35 H 0.10 -0.39 8.12 -2.39 -0.02 -0.41 16 36 H 0.40 -3.27 9.12 -74.05 -0.68 -3.95 16 37 H 0.09 -0.07 8.14 -2.39 -0.02 -0.09 16 38 H 0.07 0.00 8.14 -2.39 -0.02 -0.02 16 39 H 0.13 1.06 7.64 -2.91 -0.02 1.04 16 40 H 0.13 0.68 7.26 -2.91 -0.02 0.65 16 Total: 0.00 -25.29 353.14 -3.09 -28.38 By element: Atomic # 1 Polarization: -18.27 SS G_CDS: -0.79 Total: -19.07 kcal Atomic # 6 Polarization: 1.13 SS G_CDS: 3.04 Total: 4.17 kcal Atomic # 7 Polarization: -0.03 SS G_CDS: -2.35 Total: -2.38 kcal Atomic # 8 Polarization: -7.65 SS G_CDS: -4.01 Total: -11.66 kcal Atomic # 14 Polarization: -0.86 SS G_CDS: 2.12 Total: 1.27 kcal Atomic # 16 Polarization: 0.40 SS G_CDS: -1.10 Total: -0.70 kcal Total: -25.29 -3.09 -28.38 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_7348514_13308390.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.437 kcal (2) G-P(sol) polarization free energy of solvation -25.293 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.855 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.091 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -28.384 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.946 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds